Rh1AG195600

Dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000167
Physical Location & Seq
Forward (+)
37304376 .. 37304990
615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG195600.1

Sequence Viewer

Length: 387 bp
ATGTCTAACGAGCAAGAACACCCCAGGAAGGCATTTGGATGGGCTGCAAGAGATTCGTCTGGTGTTCTCTCTCCCTTCAGTTTCTCCAGAAGGGAATCCGGAGAGAAAGACGTGACATTCAAAGTGTTGTATTGTGGGATTTGCCATTCGGACCTTCACATGGTCAAGAATGAATGGGGCTTCTCTACCTATCCTCTGGTTCCCGGGCATGAGATTGTCGGTGAAGTAACGGAAGTAGGGAGCAATGTACAAAAATTCAAAGTTGGAGACAAAGTCGGTGTTGGATGCATAGTTGGAGCTTGCCGATCTTGTGATAGTTGTACCGACCATCTTGAGAACTACTGCCCCAAACAAATACTCACGTACAGTGCCAAGTACTATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
ADH_N ADH_zinc_N

Protein Analysis

128

Amino Acids

14.25

Weight (kDa)

6.19

Isoelectric Point (pI)

48.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 34 - 119 9.3e-24 Alcohol dehydrogenase GroES-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37980 AT4G37980 AT4G37990
fragaria_vesca FvH4_1g19210 FvH4_1g19220 FvH4_1g19240 FvH4_1g19240 FvH4_1g19261 FvH4_1g19262 FvH4_1g19263 FvH4_1g19263 FvH4_1g19265 FvH4_1g19281 FvH4_1g19281 FvH4_7g07240 FvH4_7g07240 FvH4_7g07240
malus_domestica MD01G1042500.v1.1 MD01G1042600.v1.1 MD01G1042800.v1.1 MD01G1042900.v1.1 MD05G1034100.v1.1 MD10G1035900.v1.1 MD10G1036000.v1.1 MD10G1155000.v1.1 MD10G1155100.v1.1 MD10G1155200.v1.1 MD10G1155400.v1.1 MD10G1155700.v1.1 MD10G1155800.v1.1 MD15G1308800.v1.1 MD15G1308900.v1.1
prunus_persica Prupe.6G205600_v2.0.a1 Prupe.6G205700_v2.0.a1 Prupe.6G205800_v2.0.a1 Prupe.6G205900_v2.0.a1 Prupe.6G206300_v2.0.a1 Prupe.6G206800_v2.0.a1 Prupe.6G207100_v2.0.a1 Prupe.6G207200_v2.0.a1 Prupe.6G207300_v2.0.a1 Prupe.6G207400_v2.0.a1 Prupe.6G207500_v2.0.a1 Prupe.6G207600_v2.0.a1 Prupe.6G207700_v2.0.a1 Prupe.6G207900_v2.0.a1
pyrus_communis pycom01g06970 pycom01g06980 pycom01g06990 pycom05g02460 pycom08g00750 pycom10g13410 pycom15g27310 pycom15g27320
rosa_chinensis RchiOBHm_Chr1g0314861 RchiOBHm_Chr1g0345441 RchiOBHm_Chr1g0345451 RchiOBHm_Chr1g0345621 RchiOBHm_Chr1g0345751 RchiOBHm_Chr1g0345861 RchiOBHm_Chr1g0345871 RchiOBHm_Chr1g0345891 RchiOBHm_Chr2g0094851 RchiOBHm_Chr2g0110471 RchiOBHm_Chr2g0110511 RchiOBHm_Chr2g0110531 RchiOBHm_Chr2g0110541 RchiOBHm_Chr2g0110571 RchiOBHm_Chr5g0039381 RchiOBHm_Chr5g0039391 RchiOBHm_Chr6g0270311 RchiOBHm_Chr6g0270331 RchiOBHm_Chr6g0270411 RchiOBHm_Chr6g0270431
rosa_laevigata RLG00000000515 RLG00000013793 RLG00000013797 RLG00000013799 RLG00000016525 RLG00000017808 RLG00000017811 RLG00000017813 RLG00000017816 RLG00000017819 RLG00000017822 RLG00000017824 RLG00000017825 RLG00000028835
rosa_multiflora Rmu_co8225458.1_g000001 Rmu_sc0000389.1_g000006 Rmu_sc0000389.1_g000014 Rmu_sc0000389.1_g000023 Rmu_sc0001292.1_g000012 Rmu_sc0001292.1_g000026 Rmu_sc0002145.1_g000003 Rmu_sc0002329.1_g000033 Rmu_sc0002833.1_g000044 Rmu_sc0004316.1_g000012 Rmu_sc0004439.1_g000003 Rmu_sc0006422.1_g000028 Rmu_sc0009479.1_g000012 Rmu_sc0010489.1_g000009 Rmu_sc0010489.1_g000010 Rmu_sc0017837.1_g000003 Rmu_sc0032320.1_g000001
rosa_roxburghii Rroxscaffold_1G00050770 Rroxscaffold_2G00133110 Rroxscaffold_2G00133140 Rroxscaffold_2G00133200 Rroxscaffold_2G00133270 Rroxscaffold_2G00133290 Rroxscaffold_2G00133300 Rroxscaffold_2G00133350 Rroxscaffold_4G00292490 Rroxscaffold_4G00309020 Rroxscaffold_4G00331740 Rroxscaffold_4G00331800 Rroxscaffold_6G00404470 Rroxscaffold_7G00197950 Rroxscaffold_7G00197990 Rroxscaffold_7G00198020
rosa_rugosa Rorug01G0002500 Rorug02G0047200 Rorug02G0047300 Rorug02G0047300 Rorug02G0047400 Rorug02G0168000 Rorug02G0168000 Rorug02G0168100 Rorug02G0168100 Rorug02G0168400.1 Rorug03G0157600 Rorug03G0157700 Rorug05G0112600 Rorug06G0054600 Rorug06G0054700
rosa_samantha Rh1AG013300 Rh1AG195600 Rh1AG195700 Rh1AG196000 Rh1BG004900 Rh1BG114300 Rh2AG132300 Rh2BG095500 Rh2BG229700 Rh2BG229800 Rh2CG097400 Rh2CG221500 Rh2CG221800 Rh2CG222100 Rh2CG222200 Rh2CG222500 Rh2CG222600 Rh2CG345000 Rh5BG269700 Rh6AG172900 Rh6AG173100 Rh6CG080500 Rh6DG075900 Rh6DG164700 Rh6DG164900 Rh6DG165200 Rh6DG165300
rosa_wichuraiana Rw0G015390 Rw1G000600 Rw1G016130 Rw1G016190 Rw2G007140 Rw2G016970 Rw2G016990 Rw2G017000 Rw3G018910 Rw3G018920 Rw3G018930 Rw5G024830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 98
AcsI RAATTY 1 cut(s) 254
AcuI CTGAAG 1 cut(s) 61
AfaI GTAC 4 cut(s) 249, 322, 365, 377
AfiI CCNNNNNNNGG 2 cut(s) 28, 160
AgsI TTSAA 2 cut(s) 121, 259
AjiI CACGTC 1 cut(s) 112
AjnI CCWGG 1 cut(s) 23
AluBI AGCT 1 cut(s) 299
AluI AGCT 1 cut(s) 299
Alw26I GTCTC 1 cut(s) 261
Ama87I CYCGRG 1 cut(s) 203
Aor13HI TCCGGA 1 cut(s) 98
ApeKI GCWGC 1 cut(s) 44
ApoI RAATTY 1 cut(s) 254
AspS9I GGNCC 1 cut(s) 151
AsuC2I CCSGG 2 cut(s) 204, 205
AsuHPI GGTGA 1 cut(s) 233
AvaI CYCGRG 1 cut(s) 203
AvaII GGWCC 1 cut(s) 151
BbvI GCAGC 1 cut(s) 31
BccI CCATC 2 cut(s) 33, 336
BcgI CGANNNNNNTGC 2 cut(s) 36, 70
BciT130I CCWGG 1 cut(s) 25
BcnI CCSGG 2 cut(s) 204, 205
BcoDI GTCTC 1 cut(s) 261
BisI GCNGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 46
BmcAI AGTACT 1 cut(s) 377
Bme1390I CCNGG 3 cut(s) 25, 204, 205
Bme18I GGWCC 1 cut(s) 151
BmeT110I CYCGRG 1 cut(s) 203
BmgBI CACGTC 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 151
BmiI GGNNCC 1 cut(s) 201
BmrFI CCNGG 3 cut(s) 25, 204, 205
BmsI GCATC 1 cut(s) 275
BpmI CTGGAG 1 cut(s) 70
BpuEI CTTGAG 1 cut(s) 353
BpuMI CCSGG 2 cut(s) 204, 205
BsaAI YACGTR 1 cut(s) 363
BsaJI CCNNGG 2 cut(s) 23, 203
BsaWI WCCGGW 1 cut(s) 98
BsaXI ACNNNNNCTCC 2 cut(s) 258, 288
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 160
Bse3DI GCAATG 1 cut(s) 250
BseAI TCCGGA 1 cut(s) 98
BseBI CCWGG 1 cut(s) 25
BseDI CCNNGG 2 cut(s) 23, 203
BseGI GGATG 2 cut(s) 44, 290
BseLI CCNNNNNNNGG 2 cut(s) 28, 160
BseMI GCAATG 1 cut(s) 250
BseXI GCAGC 1 cut(s) 31
BsiHKCI CYCGRG 1 cut(s) 203
BsiSI CCGG 2 cut(s) 99, 204
BslI CCNNNNNNNGG 2 cut(s) 28, 160
BsmAI GTCTC 1 cut(s) 261
BsoBI CYCGRG 1 cut(s) 203
Bsp13I TCCGGA 1 cut(s) 98
Bsp1407I TGTACA 1 cut(s) 247
Bsp143I GATC 1 cut(s) 305
BspEI TCCGGA 1 cut(s) 98
BspLI GGNNCC 1 cut(s) 201
BsrDI GCAATG 1 cut(s) 250
BsrGI TGTACA 1 cut(s) 247
BssECI CCNNGG 2 cut(s) 23, 203
BssMI GATC 1 cut(s) 305
Bst2UI CCWGG 1 cut(s) 25
Bst4CI ACNGT 1 cut(s) 368
BstAUI TGTACA 1 cut(s) 247
BstBAI YACGTR 1 cut(s) 363
BstC8I GCNNGC 1 cut(s) 301
BstF5I GGATG 2 cut(s) 44, 290
BstKTI GATC 1 cut(s) 308
BstMAI GTCTC 1 cut(s) 261
BstMBI GATC 1 cut(s) 305
BstNI CCWGG 1 cut(s) 25
BstSCI CCNGG 3 cut(s) 23, 202, 203
BstV1I GCAGC 1 cut(s) 31
BtrI CACGTC 1 cut(s) 112
BtsCI GGATG 2 cut(s) 44, 290
BtsIMutI CAGTG 1 cut(s) 373
Cac8I GCNNGC 1 cut(s) 301
Cfr13I GGNCC 1 cut(s) 151
Cfr9I CCCGGG 1 cut(s) 203
Csp6I GTAC 4 cut(s) 248, 321, 364, 376
CviAII CATG 2 cut(s) 160, 209
CviJI RGCY 3 cut(s) 44, 180, 299
CviKI_1 RGCY 3 cut(s) 44, 180, 299
CviQI GTAC 4 cut(s) 248, 321, 364, 376
DpnI GATC 1 cut(s) 307
DpnII GATC 1 cut(s) 305
Eco47I GGWCC 1 cut(s) 151
Eco57I CTGAAG 1 cut(s) 61
Eco88I CYCGRG 1 cut(s) 203
EcoRII CCWGG 1 cut(s) 23
EcoT22I ATGCAT 1 cut(s) 290
FaeI CATG 2 cut(s) 163, 212
FaiI YATR 4 cut(s) 161, 210, 290, 381
FatI CATG 2 cut(s) 159, 208
Fnu4HI GCNGC 1 cut(s) 45
FokI GGATG 2 cut(s) 51, 297
Fsp4HI GCNGC 1 cut(s) 45
GluI GCNGC 1 cut(s) 45
GsuI CTGGAG 1 cut(s) 70
HapII CCGG 2 cut(s) 99, 204
Hin1II CATG 2 cut(s) 163, 212
HinfI GANTC 2 cut(s) 53, 95
HpaII CCGG 2 cut(s) 99, 204
HphI GGTGA 1 cut(s) 233
Hpy188I TCNGA 1 cut(s) 151
Hpy188III TCNNGA 4 cut(s) 87, 99, 166, 332
HpyAV CCTTC 4 cut(s) 22, 84, 85, 164
HpyCH4III ACNGT 1 cut(s) 368
HpyCH4IV ACGT 2 cut(s) 111, 362
HpyCH4V TGCA 2 cut(s) 47, 288
HpySE526I ACGT 2 cut(s) 111, 362
Hsp92II CATG 2 cut(s) 163, 212
Kpn2I TCCGGA 1 cut(s) 98
Kzo9I GATC 1 cut(s) 305
LmnI GCTCC 2 cut(s) 240, 296
LpnPI CCDG 7 cut(s) 10, 37, 45, 100, 112, 182, 217
Lsp1109I GCAGC 1 cut(s) 31
LweI GCATC 1 cut(s) 275
MaeII ACGT 2 cut(s) 111, 362
MaeIII GTNAC 2 cut(s) 112, 226
MalI GATC 1 cut(s) 307
MboI GATC 1 cut(s) 305
MluCI AATT 1 cut(s) 254
MmeI TCCRAC 3 cut(s) 244, 262, 274
MnlI CCTC 1 cut(s) 204
Mph1103I ATGCAT 1 cut(s) 290
MroI TCCGGA 1 cut(s) 98
MslI CAYNNNNRTG 1 cut(s) 37
MspI CCGG 2 cut(s) 99, 204
MspR9I CCNGG 3 cut(s) 25, 204, 205
MvaI CCWGG 1 cut(s) 25
NciI CCSGG 2 cut(s) 204, 205
NdeII GATC 1 cut(s) 305
NlaIII CATG 2 cut(s) 163, 212
NlaIV GGNNCC 1 cut(s) 201
NmuCI GTSAC 1 cut(s) 112
NsiI ATGCAT 1 cut(s) 290
PfeI GAWTC 2 cut(s) 53, 95
PflFI GACNNNGTC 1 cut(s) 272
PkrI GCNGC 1 cut(s) 46
Ppu21I YACGTR 1 cut(s) 363
Psp6I CCWGG 1 cut(s) 23
PspGI CCWGG 1 cut(s) 23
PspN4I GGNNCC 1 cut(s) 201
PspPI GGNCC 1 cut(s) 151
PsyI GACNNNGTC 1 cut(s) 272
RsaI GTAC 4 cut(s) 249, 322, 365, 377
RsaNI GTAC 4 cut(s) 248, 321, 364, 376
RseI CAYNNNNRTG 1 cut(s) 37
SatI GCNGC 1 cut(s) 45
Sau3AI GATC 1 cut(s) 305
Sau96I GGNCC 1 cut(s) 151
ScaI AGTACT 1 cut(s) 377
ScrFI CCNGG 3 cut(s) 25, 204, 205
SetI ASST 5 cut(s) 114, 156, 191, 301, 365
SfaNI GCATC 1 cut(s) 275
SinI GGWCC 1 cut(s) 151
SmaI CCCGGG 1 cut(s) 205
SmiMI CAYNNNNRTG 1 cut(s) 37
SmlI CTYRAG 1 cut(s) 332
SmoI CTYRAG 1 cut(s) 332
Sse9I AATT 1 cut(s) 254
StyD4I CCNGG 3 cut(s) 23, 202, 203
TaaI ACNGT 1 cut(s) 368
TaiI ACGT 2 cut(s) 114, 365
TasI AATT 1 cut(s) 254
TatI WGTACW 2 cut(s) 247, 375
TfiI GAWTC 2 cut(s) 53, 95
TscAI CASTG 1 cut(s) 373
TseFI GTSAC 1 cut(s) 112
TseI GCWGC 1 cut(s) 44
Tsp45I GTSAC 1 cut(s) 112
TspDTI ATGAA 1 cut(s) 186
TspGWI ACGGA 1 cut(s) 245
TspMI CCCGGG 1 cut(s) 203
TspRI CASTG 1 cut(s) 373
Tth111I GACNNNGTC 1 cut(s) 272
VpaK11BI GGWCC 1 cut(s) 151
XapI RAATTY 1 cut(s) 254
XmaI CCCGGG 1 cut(s) 203
ZrmI AGTACT 1 cut(s) 377
Zsp2I ATGCAT 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.