Rh1AG195700

Dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000167
Physical Location & Seq
Forward (+)
37305021 .. 37305863
843 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG195700.1

Sequence Viewer

Length: 696 bp
ATGGTTGCAGATGAACACTTCGTACTCCGTATCCCGGACAACCTACCCCTTGATTGTGCTGCTCCTCTCCTATGTGCCGGAATCACAACCTACAGCCCGTTGAGATATTTTGGACTTGACAAGCCCGGCATGCATGTGGGTGTGGTTGGCCTAGGTGGTTTAGGCCACGTCGCAGTGAAGTTTGCCAAGGCAATGGGAGTGAAGGTTACAGTGATCAGTACGTCCCCTAATAAGAAGGAGGAAGCAGTTAAACACCTAGGAGCTGATTCGTTTTTGGTTAGTCGTGACCAAGATCAAATGCAGGCTGCCATTGGTACCATGGATGGGATCATTGACACAGTTTCTGCACAACATCCTCTCTTGCCTTTGATTGGTTTGTTGAAGTCTCATGGAAAGCTTGTCATGGTTGGTGCACCAGAAAAGCCTCTTGAGCTTCCAGTTTTCCCTTTACTCATGGGGTTATTAACAGAGCTAATGTTCGATTTAACAGGAAGGAAGATGGTAGCTGGTAGCGGCATTGGAGGTATGAAGGAGACACAAGAGATGATCAATTTTGCAGCCAAGCACAACATAACAGCAGACATCGAGGTTATCCCAATTGACTACTTGAACACTGCCATGGAGCGCCTTGCCAAAGCAGACGTCAGATACCGTTTTGTCATTGACATTGGAAACACACTGAAGGCTAGATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
ADH_N ADH_zinc_N

Protein Analysis

231

Amino Acids

24.84

Weight (kDa)

6.65

Isoelectric Point (pI)

25.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2-Hacid_dh_C PF02826 35 - 85 4.5e-06 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
AlaDh_PNT_C PF01262 45 - 115 1.7e-06 Alanine dehydrogenase/PNT, C-terminal domain
ADH_zinc_N PF00107 53 - 156 3.1e-19 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37980 AT4G37980 AT4G37990
fragaria_vesca FvH4_1g19210 FvH4_1g19220 FvH4_1g19240 FvH4_1g19240 FvH4_1g19261 FvH4_1g19262 FvH4_1g19263 FvH4_1g19263 FvH4_1g19265 FvH4_1g19281 FvH4_1g19281 FvH4_7g07240 FvH4_7g07240 FvH4_7g07240
malus_domestica MD01G1042500.v1.1 MD01G1042600.v1.1 MD01G1042800.v1.1 MD01G1042900.v1.1 MD05G1034100.v1.1 MD10G1035900.v1.1 MD10G1036000.v1.1 MD10G1155000.v1.1 MD10G1155100.v1.1 MD10G1155200.v1.1 MD10G1155400.v1.1 MD10G1155700.v1.1 MD10G1155800.v1.1 MD15G1308800.v1.1 MD15G1308900.v1.1
prunus_persica Prupe.6G205600_v2.0.a1 Prupe.6G205700_v2.0.a1 Prupe.6G205800_v2.0.a1 Prupe.6G205900_v2.0.a1 Prupe.6G206300_v2.0.a1 Prupe.6G206800_v2.0.a1 Prupe.6G207100_v2.0.a1 Prupe.6G207200_v2.0.a1 Prupe.6G207300_v2.0.a1 Prupe.6G207400_v2.0.a1 Prupe.6G207500_v2.0.a1 Prupe.6G207600_v2.0.a1 Prupe.6G207700_v2.0.a1 Prupe.6G207900_v2.0.a1
pyrus_communis pycom01g06970 pycom01g06980 pycom01g06990 pycom05g02460 pycom08g00750 pycom10g13410 pycom15g27310 pycom15g27320
rosa_chinensis RchiOBHm_Chr1g0314861 RchiOBHm_Chr1g0345441 RchiOBHm_Chr1g0345451 RchiOBHm_Chr1g0345621 RchiOBHm_Chr1g0345751 RchiOBHm_Chr1g0345861 RchiOBHm_Chr1g0345871 RchiOBHm_Chr1g0345891 RchiOBHm_Chr2g0094851 RchiOBHm_Chr2g0110471 RchiOBHm_Chr2g0110511 RchiOBHm_Chr2g0110531 RchiOBHm_Chr2g0110541 RchiOBHm_Chr2g0110571 RchiOBHm_Chr5g0039381 RchiOBHm_Chr5g0039391 RchiOBHm_Chr6g0270311 RchiOBHm_Chr6g0270331 RchiOBHm_Chr6g0270411 RchiOBHm_Chr6g0270431
rosa_laevigata RLG00000000515 RLG00000013793 RLG00000013797 RLG00000013799 RLG00000016525 RLG00000017808 RLG00000017811 RLG00000017813 RLG00000017816 RLG00000017819 RLG00000017822 RLG00000017824 RLG00000017825 RLG00000028835
rosa_multiflora Rmu_co8225458.1_g000001 Rmu_sc0000389.1_g000006 Rmu_sc0000389.1_g000014 Rmu_sc0000389.1_g000023 Rmu_sc0001292.1_g000012 Rmu_sc0001292.1_g000026 Rmu_sc0002145.1_g000003 Rmu_sc0002329.1_g000033 Rmu_sc0002833.1_g000044 Rmu_sc0004316.1_g000012 Rmu_sc0004439.1_g000003 Rmu_sc0006422.1_g000028 Rmu_sc0009479.1_g000012 Rmu_sc0010489.1_g000009 Rmu_sc0010489.1_g000010 Rmu_sc0017837.1_g000003 Rmu_sc0032320.1_g000001
rosa_roxburghii Rroxscaffold_1G00050770 Rroxscaffold_2G00133110 Rroxscaffold_2G00133140 Rroxscaffold_2G00133200 Rroxscaffold_2G00133270 Rroxscaffold_2G00133290 Rroxscaffold_2G00133300 Rroxscaffold_2G00133350 Rroxscaffold_4G00292490 Rroxscaffold_4G00309020 Rroxscaffold_4G00331740 Rroxscaffold_4G00331800 Rroxscaffold_6G00404470 Rroxscaffold_7G00197950 Rroxscaffold_7G00197990 Rroxscaffold_7G00198020
rosa_rugosa Rorug01G0002500 Rorug02G0047200 Rorug02G0047300 Rorug02G0047300 Rorug02G0047400 Rorug02G0168000 Rorug02G0168000 Rorug02G0168100 Rorug02G0168100 Rorug02G0168400.1 Rorug03G0157600 Rorug03G0157700 Rorug05G0112600 Rorug06G0054600 Rorug06G0054700
rosa_samantha Rh1AG013300 Rh1AG195600 Rh1AG195700 Rh1AG196000 Rh1BG004900 Rh1BG114300 Rh2AG132300 Rh2BG095500 Rh2BG229700 Rh2BG229800 Rh2CG097400 Rh2CG221500 Rh2CG221800 Rh2CG222100 Rh2CG222200 Rh2CG222500 Rh2CG222600 Rh2CG345000 Rh5BG269700 Rh6AG172900 Rh6AG173100 Rh6CG080500 Rh6DG075900 Rh6DG164700 Rh6DG164900 Rh6DG165200 Rh6DG165300
rosa_wichuraiana Rw0G015390 Rw1G000600 Rw1G016130 Rw1G016190 Rw2G007140 Rw2G016970 Rw2G016990 Rw2G017000 Rw3G018910 Rw3G018920 Rw3G018930 Rw5G024830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 645
Acc65I GGTACC 1 cut(s) 314
AccB1I GGYRCC 1 cut(s) 314
AciI CCGC 1 cut(s) 513
AclWI GGATC 1 cut(s) 335
AcyI GRCGYC 1 cut(s) 642
AfaI GTAC 3 cut(s) 24, 220, 316
AfiI CCNNNNNNNGG 3 cut(s) 34, 324, 371
AgsI TTSAA 2 cut(s) 382, 610
AjiI CACGTC 1 cut(s) 169
AluBI AGCT 5 cut(s) 263, 397, 433, 472, 506
AluI AGCT 5 cut(s) 263, 397, 433, 472, 506
Alw21I GWGCWC 1 cut(s) 415
Alw26I GTCTC 2 cut(s) 390, 527
Alw44I GTGCAC 1 cut(s) 411
AlwI GGATC 1 cut(s) 335
AlwNI CAGNNNCTG 1 cut(s) 344
AoxI GGCC 2 cut(s) 148, 163
ApaLI GTGCAC 1 cut(s) 411
ApeKI GCWGC 3 cut(s) 59, 305, 557
ArsI GACNNNNNNTTYG 2 cut(s) 627, 659
Asp718I GGTACC 1 cut(s) 314
AspA2I CCTAGG 2 cut(s) 151, 256
AspLEI GCGC 1 cut(s) 627
AsuC2I CCSGG 2 cut(s) 35, 126
AvrII CCTAGG 2 cut(s) 151, 256
BaeGI GKGCMC 1 cut(s) 415
BanI GGYRCC 1 cut(s) 314
Bbv12I GWGCWC 1 cut(s) 415
BbvI GCAGC 3 cut(s) 46, 292, 569
BccI CCATC 2 cut(s) 317, 493
BciVI GTATCC 1 cut(s) 41
BclI TGATCA 2 cut(s) 213, 546
BcnI CCSGG 2 cut(s) 35, 126
BcoDI GTCTC 2 cut(s) 390, 527
BfaI CTAG 3 cut(s) 152, 257, 687
BfmI CTRYAG 1 cut(s) 91
BfoI RGCGCY 1 cut(s) 628
BfuI GTATCC 1 cut(s) 41
BglII AGATCT 1 cut(s) 689
BisI GCNGC 4 cut(s) 60, 306, 514, 558
BlnI CCTAGG 2 cut(s) 151, 256
BlsI GCNGC 4 cut(s) 61, 307, 515, 559
Bme1390I CCNGG 2 cut(s) 35, 126
BmgBI CACGTC 1 cut(s) 169
BmiI GGNNCC 1 cut(s) 316
BmrFI CCNGG 2 cut(s) 35, 126
BpuEI CTTGAG 1 cut(s) 449
BpuMI CCSGG 2 cut(s) 35, 126
BsaHI GRCGYC 1 cut(s) 642
BsaJI CCNNGG 5 cut(s) 151, 186, 256, 318, 618
BsaXI ACNNNNNCTCC 2 cut(s) 189, 219
Bsc4I CCNNNNNNNGG 3 cut(s) 34, 324, 371
Bse1I ACTGG 1 cut(s) 437
Bse3DI GCAATG 1 cut(s) 198
BseDI CCNNGG 5 cut(s) 151, 186, 256, 318, 618
BseGI GGATG 2 cut(s) 328, 352
BseLI CCNNNNNNNGG 3 cut(s) 34, 324, 371
BseMI GCAATG 1 cut(s) 198
BseNI ACTGG 1 cut(s) 437
BseRI GAGGAG 1 cut(s) 54
BseSI GKGCMC 1 cut(s) 415
BseXI GCAGC 3 cut(s) 46, 292, 569
BsgI GTGCAG 1 cut(s) 330
BshFI GGCC 2 cut(s) 150, 165
BshNI GGYRCC 1 cut(s) 314
BsiHKAI GWGCWC 1 cut(s) 415
BsiSI CCGG 3 cut(s) 35, 78, 126
BslFI GGGAC 1 cut(s) 208
BslI CCNNNNNNNGG 3 cut(s) 34, 324, 371
BsmAI GTCTC 2 cut(s) 390, 527
BsmFI GGGAC 1 cut(s) 208
BsnI GGCC 2 cut(s) 150, 165
Bsp1286I GDGCHC 1 cut(s) 415
Bsp143I GATC 5 cut(s) 213, 292, 327, 546, 689
Bsp19I CCATGG 2 cut(s) 318, 618
BspACI CCGC 1 cut(s) 513
BspANI GGCC 2 cut(s) 150, 165
BspLI GGNNCC 1 cut(s) 316
BspPI GGATC 1 cut(s) 335
BspT107I GGYRCC 1 cut(s) 314
BsrDI GCAATG 1 cut(s) 198
BsrI ACTGG 1 cut(s) 437
BssECI CCNNGG 5 cut(s) 151, 186, 256, 318, 618
BssMI GATC 5 cut(s) 213, 292, 327, 546, 689
BssNI GRCGYC 1 cut(s) 642
BssT1I CCWWGG 5 cut(s) 151, 186, 256, 318, 618
Bst4CI ACNGT 3 cut(s) 211, 340, 653
BstACI GRCGYC 1 cut(s) 642
BstC8I GCNNGC 2 cut(s) 131, 303
BstDSI CCRYGG 2 cut(s) 318, 618
BstF5I GGATG 2 cut(s) 328, 352
BstH2I RGCGCY 1 cut(s) 628
BstHHI GCGC 1 cut(s) 627
BstKTI GATC 5 cut(s) 216, 295, 330, 549, 692
BstMAI GTCTC 2 cut(s) 390, 527
BstMBI GATC 5 cut(s) 213, 292, 327, 546, 689
BstMWI GCNNNNNNNGC 2 cut(s) 130, 430
BstNSI RCATGY 2 cut(s) 133, 137
BstSCI CCNGG 2 cut(s) 33, 124
BstSFI CTRYAG 1 cut(s) 91
BstSLI GKGCMC 1 cut(s) 415
BstV1I GCAGC 3 cut(s) 46, 292, 569
BstX2I RGATCY 1 cut(s) 689
BstXI CCANNNNNNTGG 1 cut(s) 193
BstYI RGATCY 1 cut(s) 689
BsuI GTATCC 1 cut(s) 41
BsuRI GGCC 2 cut(s) 150, 165
BtgI CCRYGG 2 cut(s) 318, 618
BtrI CACGTC 1 cut(s) 169
BtsCI GGATG 2 cut(s) 328, 352
BtsI GCAGTG 2 cut(s) 180, 612
BtsIMutI CAGTG 4 cut(s) 180, 216, 612, 677
Cac8I GCNNGC 2 cut(s) 131, 303
CaiI CAGNNNCTG 1 cut(s) 344
CfoI GCGC 1 cut(s) 627
Csp6I GTAC 3 cut(s) 23, 219, 315
CviAII CATG 7 cut(s) 130, 134, 319, 389, 403, 454, 619
CviQI GTAC 3 cut(s) 23, 219, 315
DpnI GATC 5 cut(s) 215, 294, 329, 548, 691
DpnII GATC 5 cut(s) 213, 292, 327, 546, 689
Eco130I CCWWGG 5 cut(s) 151, 186, 256, 318, 618
EcoT14I CCWWGG 5 cut(s) 151, 186, 256, 318, 618
EcoT22I ATGCAT 1 cut(s) 135
ErhI CCWWGG 5 cut(s) 151, 186, 256, 318, 618
FaeI CATG 7 cut(s) 133, 137, 322, 392, 406, 457, 622
FaqI GGGAC 1 cut(s) 208
FatI CATG 7 cut(s) 129, 133, 318, 388, 402, 453, 618
FbaI TGATCA 2 cut(s) 213, 546
Fnu4HI GCNGC 4 cut(s) 60, 306, 514, 558
FokI GGATG 2 cut(s) 335, 339
Fsp4HI GCNGC 4 cut(s) 60, 306, 514, 558
FspBI CTAG 3 cut(s) 152, 257, 687
GlaI GCGC 1 cut(s) 626
GluI GCNGC 4 cut(s) 60, 306, 514, 558
HaeII RGCGCY 1 cut(s) 628
HaeIII GGCC 2 cut(s) 150, 165
HapII CCGG 3 cut(s) 35, 78, 126
HhaI GCGC 1 cut(s) 627
Hin1I GRCGYC 1 cut(s) 642
Hin1II CATG 7 cut(s) 133, 137, 322, 392, 406, 457, 622
Hin6I GCGC 1 cut(s) 625
HinP1I GCGC 1 cut(s) 625
HindIII AAGCTT 1 cut(s) 395
HinfI GANTC 2 cut(s) 81, 266
HpaII CCGG 3 cut(s) 35, 78, 126
Hpy166II GTNNAC 1 cut(s) 413
Hpy188I TCNGA 1 cut(s) 647
Hpy188III TCNNGA 2 cut(s) 284, 428
Hpy8I GTNNAC 1 cut(s) 413
Hpy99I CGWCG 1 cut(s) 173
HpyAV CCTTC 5 cut(s) 196, 229, 486, 523, 676
HpyCH4III ACNGT 3 cut(s) 211, 340, 653
HpyCH4IV ACGT 3 cut(s) 168, 221, 642
HpyCH4V TGCA 6 cut(s) 8, 133, 301, 347, 413, 557
HpyF10VI GCNNNNNNNGC 2 cut(s) 130, 430
HpySE526I ACGT 3 cut(s) 168, 221, 642
Hsp92I GRCGYC 1 cut(s) 642
Hsp92II CATG 7 cut(s) 133, 137, 322, 392, 406, 457, 622
HspAI GCGC 1 cut(s) 625
KpnI GGTACC 1 cut(s) 318
Ksp22I TGATCA 2 cut(s) 213, 546
Kzo9I GATC 5 cut(s) 213, 292, 327, 546, 689
LmnI GCTCC 3 cut(s) 67, 260, 622
LpnPI CCDG 8 cut(s) 48, 91, 139, 287, 429, 450, 474, 492
Lsp1109I GCAGC 3 cut(s) 46, 292, 569
MaeI CTAG 3 cut(s) 152, 257, 687
MaeII ACGT 3 cut(s) 168, 221, 642
MaeIII GTNAC 2 cut(s) 205, 284
MalI GATC 5 cut(s) 215, 294, 329, 548, 691
MboI GATC 5 cut(s) 213, 292, 327, 546, 689
MboII GAAGA 1 cut(s) 508
MfeI CAATTG 1 cut(s) 597
MflI RGATCY 1 cut(s) 689
MhlI GDGCHC 1 cut(s) 415
MluCI AATT 2 cut(s) 550, 597
MnlI CCTC 6 cut(s) 75, 232, 366, 435, 515, 580
Mph1103I ATGCAT 1 cut(s) 135
MseI TTAA 4 cut(s) 249, 464, 485, 694
MslI CAYNNNNRTG 3 cut(s) 134, 138, 617
MspI CCGG 3 cut(s) 35, 78, 126
MspR9I CCNGG 2 cut(s) 35, 126
MunI CAATTG 1 cut(s) 597
MwoI GCNNNNNNNGC 2 cut(s) 130, 430
NciI CCSGG 2 cut(s) 35, 126
NcoI CCATGG 2 cut(s) 318, 618
NdeII GATC 5 cut(s) 213, 292, 327, 546, 689
NlaIII CATG 7 cut(s) 133, 137, 322, 392, 406, 457, 622
NlaIV GGNNCC 1 cut(s) 316
NmuCI GTSAC 1 cut(s) 284
NsiI ATGCAT 1 cut(s) 135
NspI RCATGY 2 cut(s) 133, 137
PaeI GCATGC 1 cut(s) 133
PfeI GAWTC 2 cut(s) 81, 266
PfoI TCCNGGA 1 cut(s) 33
PkrI GCNGC 4 cut(s) 61, 307, 515, 559
PspN4I GGNNCC 1 cut(s) 316
PsrI GAACNNNNNNTAC 1 cut(s) 38
PstNI CAGNNNCTG 1 cut(s) 344
PsuI RGATCY 1 cut(s) 689
RsaI GTAC 3 cut(s) 24, 220, 316
RsaNI GTAC 3 cut(s) 23, 219, 315
RseI CAYNNNNRTG 3 cut(s) 134, 138, 617
SaqAI TTAA 4 cut(s) 249, 464, 485, 694
SatI GCNGC 4 cut(s) 60, 306, 514, 558
Sau3AI GATC 5 cut(s) 213, 292, 327, 546, 689
ScrFI CCNGG 2 cut(s) 35, 126
SduI GDGCHC 1 cut(s) 415
SfcI CTRYAG 1 cut(s) 91
SmiMI CAYNNNNRTG 3 cut(s) 134, 138, 617
SmlI CTYRAG 1 cut(s) 428
SmoI CTYRAG 1 cut(s) 428
SphI GCATGC 1 cut(s) 133
Sse9I AATT 2 cut(s) 550, 597
SsiI CCGC 1 cut(s) 513
SspMI CTAG 3 cut(s) 152, 257, 687
StyD4I CCNGG 2 cut(s) 33, 124
StyI CCWWGG 5 cut(s) 151, 186, 256, 318, 618
TaaI ACNGT 3 cut(s) 211, 340, 653
TaiI ACGT 3 cut(s) 171, 224, 645
TaqI TCGA 2 cut(s) 480, 585
TasI AATT 2 cut(s) 550, 597
TauI GCSGC 1 cut(s) 516
TfiI GAWTC 2 cut(s) 81, 266
Tru1I TTAA 4 cut(s) 249, 464, 485, 694
Tru9I TTAA 4 cut(s) 249, 464, 485, 694
TscAI CASTG 4 cut(s) 180, 216, 619, 684
TseFI GTSAC 1 cut(s) 284
TseI GCWGC 3 cut(s) 59, 305, 557
Tsp45I GTSAC 1 cut(s) 284
TspDTI ATGAA 2 cut(s) 27, 542
TspGWI ACGGA 1 cut(s) 17
TspRI CASTG 4 cut(s) 180, 216, 619, 684
VneI GTGCAC 1 cut(s) 411
XceI RCATGY 2 cut(s) 133, 137
XcmI CCANNNNNNNNNTGG 1 cut(s) 316
XmaJI CCTAGG 2 cut(s) 151, 256
XspI CTAG 3 cut(s) 152, 257, 687
ZraI GACGTC 1 cut(s) 643
Zsp2I ATGCAT 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.