MD01G1042900.v1.1

Dehydrogenase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Reverse (-)
14134324 .. 14136005
1682 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1042900.v1.1.491

Sequence Viewer

Length: 1065 bp
ATGGTGATGTCTAAAGAACAAGAACACCCCAAGAAAGCCTTTGGTTGGGCTGCCAGGGATTCATCTGGCGTTTTCTTTCCATTCTCAAGAAGGGAAACGGGCGACAAAGATGTAATATTCAGAGTGTTATACTGTGGGATATGTCATTCGGACCTTCACATGGCCAATAACGAATGGGGAATTTCTACCTATCCATTGGTCCCGGTGACGGAGGTAGGGAGCAAAGTACAAAAATTCAATGTCGGAGACAAGGTAGGTGTTGGATGCATGGTGGGATCATGTACATCTTGTGAAAATTGTTCCAAGCATCATGAAAATTACTGCCCCAAAGTGATACTCACTTATGGTGCCAAGTACTACGACGGAACCACCACATATGGAGGTTACTCTGACATCATGGTGGCCAATGAGCACTTTGTAGTCCGTATACCAGACAACCTTCCCCTTGATGGAGTGGCTCCTCTCCCATGCGCTGGGATTACAACTTACAGCCCTTTGAGATATTTCGGACTTGACAAACCCGGTATCCATGTGGGTGTGGTGGGTTTAGGCAGTCTAGGCCATGTGGCTGTTAGGTTTGCTAAGGCTATGGGGGTTAAGGTTAATGTCATCAGTACCTCCCCTAATAAGAAGGATGAAGCGATTGAACATCTCTGTGCTGATTCGTTTTTGGTCAGCCGTGATGAAGATCAGTTAAACAAGTTTGCTGAAATGGGCACATTGGATGGTATCATTGACACGGTTTCTGCAGTCCACCCTCTATTGCCCTTGATTGGTTTGTTGAAGTCTCACGGAAAGCTAGTGATGGTTGGAGCACCAGAGAAGCCTCTTGAGCTTCCAGTTATTCCGTTGCTCTCGGGAAGGAAGATAGTAGCTGGGAGTGGCATTGGGGGCATGAAGGAGACGCAAGAGATGATTGATTTTGCAGCCAAGAATAACATAACAGCTGATATTGAGGTTATCCCAATGGATTATGTGAACATTGCCATGGAGCGCCTTCTTAAAGCAGATGTCAGATATCGATTTGTCATTGATATTGGAAACACATTGAAGTCTACCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

355

Amino Acids

38.51

Weight (kDa)

6.42

Isoelectric Point (pI)

27.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 34 - 145 7.6e-17 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 186 - 310 4.7e-16 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37980 AT4G37980 AT4G37990
fragaria_vesca FvH4_1g19210 FvH4_1g19220 FvH4_1g19240 FvH4_1g19240 FvH4_1g19261 FvH4_1g19262 FvH4_1g19263 FvH4_1g19263 FvH4_1g19265 FvH4_1g19281 FvH4_1g19281 FvH4_7g07240 FvH4_7g07240 FvH4_7g07240
malus_domestica MD01G1042500.v1.1 MD01G1042600.v1.1 MD01G1042800.v1.1 MD01G1042900.v1.1 MD05G1034100.v1.1 MD10G1035900.v1.1 MD10G1036000.v1.1 MD10G1155000.v1.1 MD10G1155100.v1.1 MD10G1155200.v1.1 MD10G1155400.v1.1 MD10G1155700.v1.1 MD10G1155800.v1.1 MD15G1308800.v1.1 MD15G1308900.v1.1
prunus_persica Prupe.6G205600_v2.0.a1 Prupe.6G205700_v2.0.a1 Prupe.6G205800_v2.0.a1 Prupe.6G205900_v2.0.a1 Prupe.6G206300_v2.0.a1 Prupe.6G206800_v2.0.a1 Prupe.6G207100_v2.0.a1 Prupe.6G207200_v2.0.a1 Prupe.6G207300_v2.0.a1 Prupe.6G207400_v2.0.a1 Prupe.6G207500_v2.0.a1 Prupe.6G207600_v2.0.a1 Prupe.6G207700_v2.0.a1 Prupe.6G207900_v2.0.a1
pyrus_communis pycom01g06970 pycom01g06980 pycom01g06990 pycom05g02460 pycom08g00750 pycom10g13410 pycom15g27310 pycom15g27320
rosa_chinensis RchiOBHm_Chr1g0314861 RchiOBHm_Chr1g0345441 RchiOBHm_Chr1g0345451 RchiOBHm_Chr1g0345621 RchiOBHm_Chr1g0345751 RchiOBHm_Chr1g0345861 RchiOBHm_Chr1g0345871 RchiOBHm_Chr1g0345891 RchiOBHm_Chr2g0094851 RchiOBHm_Chr2g0110471 RchiOBHm_Chr2g0110511 RchiOBHm_Chr2g0110531 RchiOBHm_Chr2g0110541 RchiOBHm_Chr2g0110571 RchiOBHm_Chr5g0039381 RchiOBHm_Chr5g0039391 RchiOBHm_Chr6g0270311 RchiOBHm_Chr6g0270331 RchiOBHm_Chr6g0270411 RchiOBHm_Chr6g0270431
rosa_laevigata RLG00000000515 RLG00000013793 RLG00000013797 RLG00000013799 RLG00000016525 RLG00000017808 RLG00000017811 RLG00000017813 RLG00000017816 RLG00000017819 RLG00000017822 RLG00000017824 RLG00000017825 RLG00000028835
rosa_multiflora Rmu_co8225458.1_g000001 Rmu_sc0000389.1_g000006 Rmu_sc0000389.1_g000014 Rmu_sc0000389.1_g000023 Rmu_sc0001292.1_g000012 Rmu_sc0001292.1_g000026 Rmu_sc0002145.1_g000003 Rmu_sc0002329.1_g000033 Rmu_sc0002833.1_g000044 Rmu_sc0004316.1_g000012 Rmu_sc0004439.1_g000003 Rmu_sc0006422.1_g000028 Rmu_sc0009479.1_g000012 Rmu_sc0010489.1_g000009 Rmu_sc0010489.1_g000010 Rmu_sc0017837.1_g000003 Rmu_sc0032320.1_g000001
rosa_roxburghii Rroxscaffold_1G00050770 Rroxscaffold_2G00133110 Rroxscaffold_2G00133140 Rroxscaffold_2G00133200 Rroxscaffold_2G00133270 Rroxscaffold_2G00133290 Rroxscaffold_2G00133300 Rroxscaffold_2G00133350 Rroxscaffold_4G00292490 Rroxscaffold_4G00309020 Rroxscaffold_4G00331740 Rroxscaffold_4G00331800 Rroxscaffold_6G00404470 Rroxscaffold_7G00197950 Rroxscaffold_7G00197990 Rroxscaffold_7G00198020
rosa_rugosa Rorug01G0002500 Rorug02G0047200 Rorug02G0047300 Rorug02G0047300 Rorug02G0047400 Rorug02G0168000 Rorug02G0168000 Rorug02G0168100 Rorug02G0168100 Rorug02G0168400.1 Rorug03G0157600 Rorug03G0157700 Rorug05G0112600 Rorug06G0054600 Rorug06G0054700
rosa_samantha Rh1AG013300 Rh1AG195600 Rh1AG195700 Rh1AG196000 Rh1BG004900 Rh1BG114300 Rh2AG132300 Rh2BG095500 Rh2BG229700 Rh2BG229800 Rh2CG097400 Rh2CG221500 Rh2CG221800 Rh2CG222100 Rh2CG222200 Rh2CG222500 Rh2CG222600 Rh2CG345000 Rh5BG269700 Rh6AG172900 Rh6AG173100 Rh6CG080500 Rh6DG075900 Rh6DG164700 Rh6DG164900 Rh6DG165200 Rh6DG165300
rosa_wichuraiana Rw0G015390 Rw1G000600 Rw1G016130 Rw1G016190 Rw2G007140 Rw2G016970 Rw2G016990 Rw2G017000 Rw3G018910 Rw3G018920 Rw3G018930 Rw5G024830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 347
AccB7I CCANNNNNTGG 1 cut(s) 473
AccI GTMKAC 2 cut(s) 427, 1055
AclWI GGATC 1 cut(s) 283
AcoI YGGCCR 2 cut(s) 162, 402
AcsI RAATTY 2 cut(s) 180, 233
AfaI GTAC 4 cut(s) 228, 283, 356, 616
AfiI CCNNNNNNNGG 6 cut(s) 45, 160, 208, 449, 473, 773
AgsI TTSAA 4 cut(s) 238, 647, 784, 1051
AjnI CCWGG 1 cut(s) 53
AluBI AGCT 4 cut(s) 799, 835, 875, 947
AluI AGCT 4 cut(s) 799, 835, 875, 947
Alw21I GWGCWC 2 cut(s) 414, 817
Alw26I GTCTC 3 cut(s) 240, 792, 896
AlwI GGATC 1 cut(s) 283
Ama87I CYCGRG 1 cut(s) 856
AoxI GGCC 3 cut(s) 162, 402, 559
ApeKI GCWGC 2 cut(s) 50, 926
ApoI RAATTY 2 cut(s) 180, 233
AspLEI GCGC 2 cut(s) 473, 996
AspS9I GGNCC 2 cut(s) 151, 199
AsuC2I CCSGG 2 cut(s) 203, 522
AsuHPI GGTGA 2 cut(s) 16, 217
AvaI CYCGRG 1 cut(s) 856
AvaII GGWCC 2 cut(s) 151, 199
BaeGI GKGCMC 1 cut(s) 719
BalI TGGCCA 2 cut(s) 164, 404
BanI GGYRCC 1 cut(s) 347
Bbv12I GWGCWC 2 cut(s) 414, 817
BbvI GCAGC 2 cut(s) 37, 938
BccI CCATC 3 cut(s) 443, 719, 799
BceAI ACGGC 1 cut(s) 663
BciT130I CCWGG 1 cut(s) 55
BciVI GTATCC 1 cut(s) 536
BcnI CCSGG 2 cut(s) 203, 522
BcoDI GTCTC 3 cut(s) 240, 792, 896
BfaI CTAG 2 cut(s) 557, 800
BfmI CTRYAG 1 cut(s) 747
BfoI RGCGCY 1 cut(s) 997
BfuI GTATCC 1 cut(s) 536
BisI GCNGC 2 cut(s) 51, 927
BlsI GCNGC 2 cut(s) 52, 928
BmcAI AGTACT 1 cut(s) 356
Bme1390I CCNGG 3 cut(s) 55, 203, 522
Bme18I GGWCC 2 cut(s) 151, 199
BmeT110I CYCGRG 1 cut(s) 856
BmgT120I GGNCC 2 cut(s) 151, 199
BmiI GGNNCC 4 cut(s) 201, 349, 367, 459
BmrFI CCNGG 3 cut(s) 55, 203, 522
BmsI GCATC 2 cut(s) 254, 316
Bpu10I CCTNAGC 1 cut(s) 582
BpuEI CTTGAG 2 cut(s) 70, 851
BpuMI CCSGG 2 cut(s) 203, 522
Bsa29I ATCGAT 1 cut(s) 1021
BsaBI GATNNNNATC 1 cut(s) 687
BsaJI CCNNGG 2 cut(s) 54, 987
BsaXI ACNNNNNCTCC 2 cut(s) 237, 267
Bsc4I CCNNNNNNNGG 6 cut(s) 45, 160, 208, 449, 473, 773
Bse1I ACTGG 1 cut(s) 839
Bse3DI GCAATG 1 cut(s) 981
Bse8I GATNNNNATC 1 cut(s) 687
BseBI CCWGG 1 cut(s) 55
BseCI ATCGAT 1 cut(s) 1021
BseDI CCNNGG 2 cut(s) 54, 987
BseGI GGATG 3 cut(s) 269, 640, 730
BseJI GATNNNNATC 1 cut(s) 687
BseLI CCNNNNNNNGG 6 cut(s) 45, 160, 208, 449, 473, 773
BseMI GCAATG 1 cut(s) 981
BseNI ACTGG 1 cut(s) 839
BseRI GAGGAG 1 cut(s) 450
BseSI GKGCMC 1 cut(s) 719
BseXI GCAGC 2 cut(s) 37, 938
BseYI CCCAGC 2 cut(s) 473, 875
BshFI GGCC 3 cut(s) 164, 404, 561
BshNI GGYRCC 1 cut(s) 347
BshVI ATCGAT 1 cut(s) 1021
BsiHKAI GWGCWC 2 cut(s) 414, 817
BsiHKCI CYCGRG 1 cut(s) 856
BsiSI CCGG 2 cut(s) 203, 522
BslFI GGGAC 1 cut(s) 185
BslI CCNNNNNNNGG 6 cut(s) 45, 160, 208, 449, 473, 773
BsmAI GTCTC 3 cut(s) 240, 792, 896
BsmBI CGTCTC 1 cut(s) 896
BsmFI GGGAC 1 cut(s) 185
BsnI GGCC 3 cut(s) 164, 404, 561
BsoBI CYCGRG 1 cut(s) 856
Bsp1286I GDGCHC 3 cut(s) 414, 719, 817
Bsp1407I TGTACA 1 cut(s) 281
Bsp143I GATC 2 cut(s) 275, 688
Bsp19I CCATGG 1 cut(s) 987
BspANI GGCC 3 cut(s) 164, 404, 561
BspDI ATCGAT 1 cut(s) 1021
BspHI TCATGA 1 cut(s) 310
BspLI GGNNCC 4 cut(s) 201, 349, 367, 459
BspMAI CTGCAG 1 cut(s) 751
BspPI GGATC 1 cut(s) 283
BspT107I GGYRCC 1 cut(s) 347
BsrDI GCAATG 1 cut(s) 981
BsrGI TGTACA 1 cut(s) 281
BsrI ACTGG 1 cut(s) 839
BssECI CCNNGG 2 cut(s) 54, 987
BssMI GATC 2 cut(s) 275, 688
BssNAI GTATAC 1 cut(s) 428
BssT1I CCWWGG 1 cut(s) 987
Bst1107I GTATAC 1 cut(s) 428
Bst2UI CCWGG 1 cut(s) 55
Bst4CI ACNGT 2 cut(s) 134, 742
BstAUI TGTACA 1 cut(s) 281
BstDEI CTNAG 1 cut(s) 582
BstDSI CCRYGG 1 cut(s) 987
BstF5I GGATG 3 cut(s) 269, 640, 730
BstH2I RGCGCY 1 cut(s) 997
BstHHI GCGC 2 cut(s) 473, 996
BstKTI GATC 2 cut(s) 278, 691
BstMAI GTCTC 3 cut(s) 240, 792, 896
BstMBI GATC 2 cut(s) 275, 688
BstMWI GCNNNNNNNGC 3 cut(s) 558, 832, 891
BstNI CCWGG 1 cut(s) 55
BstSCI CCNGG 3 cut(s) 53, 201, 520
BstSFI CTRYAG 1 cut(s) 747
BstSLI GKGCMC 1 cut(s) 719
BstV1I GCAGC 2 cut(s) 37, 938
BstZ17I GTATAC 1 cut(s) 428
Bsu15I ATCGAT 1 cut(s) 1021
BsuI GTATCC 1 cut(s) 536
BsuRI GGCC 3 cut(s) 164, 404, 561
BsuTUI ATCGAT 1 cut(s) 1021
BtgI CCRYGG 1 cut(s) 987
BtsCI GGATG 3 cut(s) 269, 640, 730
CciI TCATGA 1 cut(s) 310
CfoI GCGC 2 cut(s) 473, 996
Cfr13I GGNCC 2 cut(s) 151, 199
ClaI ATCGAT 1 cut(s) 1021
CseI GACGC 1 cut(s) 913
Csp6I GTAC 4 cut(s) 227, 282, 355, 615
CviQI GTAC 4 cut(s) 227, 282, 355, 615
DdeI CTNAG 1 cut(s) 582
DpnI GATC 2 cut(s) 277, 690
DpnII GATC 2 cut(s) 275, 688
EaeI YGGCCR 2 cut(s) 162, 402
Eco130I CCWWGG 1 cut(s) 987
Eco32I GATATC 1 cut(s) 1019
Eco47I GGWCC 2 cut(s) 151, 199
Eco88I CYCGRG 1 cut(s) 856
EcoRII CCWGG 1 cut(s) 53
EcoRV GATATC 1 cut(s) 1019
EcoT14I CCWWGG 1 cut(s) 987
EcoT22I ATGCAT 1 cut(s) 269
ErhI CCWWGG 1 cut(s) 987
Esp3I CGTCTC 1 cut(s) 896
FalI AAGNNNNNCTT 3 cut(s) 23, 55, 1043
FaqI GGGAC 1 cut(s) 185
FauNDI CATATG 1 cut(s) 376
FblI GTMKAC 2 cut(s) 427, 1055
Fnu4HI GCNGC 2 cut(s) 51, 927
FokI GGATG 3 cut(s) 276, 647, 737
Fsp4HI GCNGC 2 cut(s) 51, 927
FspBI CTAG 2 cut(s) 557, 800
GlaI GCGC 2 cut(s) 472, 995
GluI GCNGC 2 cut(s) 51, 927
GsaI CCCAGC 2 cut(s) 477, 879
HaeII RGCGCY 1 cut(s) 997
HaeIII GGCC 3 cut(s) 164, 404, 561
HapII CCGG 2 cut(s) 203, 522
HgaI GACGC 1 cut(s) 913
HhaI GCGC 2 cut(s) 473, 996
Hin6I GCGC 2 cut(s) 471, 994
HinP1I GCGC 2 cut(s) 471, 994
HinfI GANTC 2 cut(s) 59, 662
HpaII CCGG 2 cut(s) 203, 522
HphI GGTGA 2 cut(s) 16, 217
Hpy166II GTNNAC 4 cut(s) 428, 754, 979, 1056
Hpy188I TCNGA 6 cut(s) 122, 151, 245, 391, 509, 1016
Hpy188III TCNNGA 4 cut(s) 87, 311, 830, 858
Hpy8I GTNNAC 4 cut(s) 428, 754, 979, 1056
Hpy99I CGWCG 1 cut(s) 365
HpyAV CCTTC 7 cut(s) 84, 164, 449, 625, 855, 892, 1007
HpyCH4III ACNGT 2 cut(s) 134, 742
HpyCH4V TGCA 3 cut(s) 267, 749, 926
HpyF10VI GCNNNNNNNGC 3 cut(s) 558, 832, 891
HpyF3I CTNAG 1 cut(s) 582
HspAI GCGC 2 cut(s) 471, 994
Kzo9I GATC 2 cut(s) 275, 688
LmnI GCTCC 4 cut(s) 219, 463, 812, 991
Lsp1109I GCAGC 2 cut(s) 37, 938
LweI GCATC 2 cut(s) 254, 316
MaeI CTAG 2 cut(s) 557, 800
MaeIII GTNAC 2 cut(s) 205, 383
MalI GATC 2 cut(s) 277, 690
MboI GATC 2 cut(s) 275, 688
MboII GAAGA 2 cut(s) 698, 877
MhlI GDGCHC 3 cut(s) 414, 719, 817
MlsI TGGCCA 2 cut(s) 164, 404
MluCI AATT 4 cut(s) 180, 233, 295, 316
MluNI TGGCCA 2 cut(s) 164, 404
MmeI TCCRAC 3 cut(s) 223, 241, 790
MnlI CCTC 7 cut(s) 205, 374, 471, 628, 768, 837, 949
Mox20I TGGCCA 2 cut(s) 164, 404
Mph1103I ATGCAT 1 cut(s) 269
MscI TGGCCA 2 cut(s) 164, 404
MseI TTAA 4 cut(s) 597, 603, 695, 1002
MslI CAYNNNNRTG 4 cut(s) 398, 534, 654, 986
Msp20I TGGCCA 2 cut(s) 164, 404
MspA1I CMGCKG 1 cut(s) 947
MspI CCGG 2 cut(s) 203, 522
MspR9I CCNGG 3 cut(s) 55, 203, 522
MvaI CCWGG 1 cut(s) 55
MwoI GCNNNNNNNGC 3 cut(s) 558, 832, 891
NciI CCSGG 2 cut(s) 203, 522
NcoI CCATGG 1 cut(s) 987
NdeI CATATG 1 cut(s) 376
NdeII GATC 2 cut(s) 275, 688
NlaIV GGNNCC 4 cut(s) 201, 349, 367, 459
NmuCI GTSAC 1 cut(s) 205
NsiI ATGCAT 1 cut(s) 269
PagI TCATGA 1 cut(s) 310
PfeI GAWTC 2 cut(s) 59, 662
PflMI CCANNNNNTGG 1 cut(s) 473
PkrI GCNGC 2 cut(s) 52, 928
Psp6I CCWGG 1 cut(s) 53
PspFI CCCAGC 2 cut(s) 473, 875
PspGI CCWGG 1 cut(s) 53
PspN4I GGNNCC 4 cut(s) 201, 349, 367, 459
PspPI GGNCC 2 cut(s) 151, 199
PstI CTGCAG 1 cut(s) 751
PvuII CAGCTG 1 cut(s) 947
RsaI GTAC 4 cut(s) 228, 283, 356, 616
RsaNI GTAC 4 cut(s) 227, 282, 355, 615
RseI CAYNNNNRTG 4 cut(s) 398, 534, 654, 986
SaqAI TTAA 4 cut(s) 597, 603, 695, 1002
SatI GCNGC 2 cut(s) 51, 927
Sau3AI GATC 2 cut(s) 275, 688
Sau96I GGNCC 2 cut(s) 151, 199
ScaI AGTACT 1 cut(s) 356
ScrFI CCNGG 3 cut(s) 55, 203, 522
SduI GDGCHC 3 cut(s) 414, 719, 817
SfaNI GCATC 2 cut(s) 254, 316
SfcI CTRYAG 1 cut(s) 747
SinI GGWCC 2 cut(s) 151, 199
SmiMI CAYNNNNRTG 4 cut(s) 398, 534, 654, 986
SmlI CTYRAG 2 cut(s) 85, 830
SmoI CTYRAG 2 cut(s) 85, 830
Sse9I AATT 4 cut(s) 180, 233, 295, 316
SspI AATATT 1 cut(s) 117
SspMI CTAG 2 cut(s) 557, 800
StyD4I CCNGG 3 cut(s) 53, 201, 520
StyI CCWWGG 1 cut(s) 987
TaaI ACNGT 2 cut(s) 134, 742
TaqI TCGA 1 cut(s) 1021
TasI AATT 4 cut(s) 180, 233, 295, 316
TatI WGTACW 3 cut(s) 226, 281, 354
TfiI GAWTC 2 cut(s) 59, 662
Tru1I TTAA 4 cut(s) 597, 603, 695, 1002
Tru9I TTAA 4 cut(s) 597, 603, 695, 1002
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 2 cut(s) 50, 926
Tsp45I GTSAC 1 cut(s) 205
TspDTI ATGAA 5 cut(s) 51, 327, 651, 699, 911
TspGWI ACGGA 5 cut(s) 224, 378, 413, 807, 837
Van91I CCANNNNNTGG 1 cut(s) 473
VpaK11BI GGWCC 2 cut(s) 151, 199
XapI RAATTY 2 cut(s) 180, 233
XmiI GTMKAC 2 cut(s) 427, 1055
XspI CTAG 2 cut(s) 557, 800
ZrmI AGTACT 1 cut(s) 356
Zsp2I ATGCAT 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.