MD10G1155200.v1.1

Dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000167
Physical Location & Seq
Reverse (-)
24289569 .. 24290188
620 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1155200.v1.1.491

Sequence Viewer

Length: 345 bp
ATGTCTACAGAACAAGAACACCCCAAGAAAGCCTTTGGTTGGGCCGCCAGGGATTCATCTGGCGTTTTCTCTCCCTTCAAATTCTCAAGAAGATGTGATGTTCAAAGTGTATGCCATTCAGACCTTCACATGGCCAAGAACGAATGGGGAACGTCTAACTATCCATTGGTAGGGAGCAAAGTACAAAAATTCAGTGTTGGAGACAAGGTAGGTGTTGGATGCATGGTGGGATCATGTAAATCTTGTGAAAGTTGTTCCAACAATCTTGAAAATTACTGCCCTAAATCGATACTTACTTATGGTTCCAAGTACTACGATGGAACCACCACATGGAGGTTAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
ADH_N ADH_zinc_N

Protein Analysis

115

Amino Acids

12.67

Weight (kDa)

8.69

Isoelectric Point (pI)

50.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 35 - 102 2.7e-06 Alcohol dehydrogenase GroES-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37980 AT4G37980 AT4G37990
fragaria_vesca FvH4_1g19210 FvH4_1g19220 FvH4_1g19240 FvH4_1g19240 FvH4_1g19261 FvH4_1g19262 FvH4_1g19263 FvH4_1g19263 FvH4_1g19265 FvH4_1g19281 FvH4_1g19281 FvH4_7g07240 FvH4_7g07240 FvH4_7g07240
malus_domestica MD01G1042500.v1.1 MD01G1042600.v1.1 MD01G1042800.v1.1 MD01G1042900.v1.1 MD05G1034100.v1.1 MD10G1035900.v1.1 MD10G1036000.v1.1 MD10G1155000.v1.1 MD10G1155100.v1.1 MD10G1155200.v1.1 MD10G1155400.v1.1 MD10G1155700.v1.1 MD10G1155800.v1.1 MD15G1308800.v1.1 MD15G1308900.v1.1
prunus_persica Prupe.6G205600_v2.0.a1 Prupe.6G205700_v2.0.a1 Prupe.6G205800_v2.0.a1 Prupe.6G205900_v2.0.a1 Prupe.6G206300_v2.0.a1 Prupe.6G206800_v2.0.a1 Prupe.6G207100_v2.0.a1 Prupe.6G207200_v2.0.a1 Prupe.6G207300_v2.0.a1 Prupe.6G207400_v2.0.a1 Prupe.6G207500_v2.0.a1 Prupe.6G207600_v2.0.a1 Prupe.6G207700_v2.0.a1 Prupe.6G207900_v2.0.a1
pyrus_communis pycom01g06970 pycom01g06980 pycom01g06990 pycom05g02460 pycom08g00750 pycom10g13410 pycom15g27310 pycom15g27320
rosa_chinensis RchiOBHm_Chr1g0314861 RchiOBHm_Chr1g0345441 RchiOBHm_Chr1g0345451 RchiOBHm_Chr1g0345621 RchiOBHm_Chr1g0345751 RchiOBHm_Chr1g0345861 RchiOBHm_Chr1g0345871 RchiOBHm_Chr1g0345891 RchiOBHm_Chr2g0094851 RchiOBHm_Chr2g0110471 RchiOBHm_Chr2g0110511 RchiOBHm_Chr2g0110531 RchiOBHm_Chr2g0110541 RchiOBHm_Chr2g0110571 RchiOBHm_Chr5g0039381 RchiOBHm_Chr5g0039391 RchiOBHm_Chr6g0270311 RchiOBHm_Chr6g0270331 RchiOBHm_Chr6g0270411 RchiOBHm_Chr6g0270431
rosa_laevigata RLG00000000515 RLG00000013793 RLG00000013797 RLG00000013799 RLG00000016525 RLG00000017808 RLG00000017811 RLG00000017813 RLG00000017816 RLG00000017819 RLG00000017822 RLG00000017824 RLG00000017825 RLG00000028835
rosa_multiflora Rmu_co8225458.1_g000001 Rmu_sc0000389.1_g000006 Rmu_sc0000389.1_g000014 Rmu_sc0000389.1_g000023 Rmu_sc0001292.1_g000012 Rmu_sc0001292.1_g000026 Rmu_sc0002145.1_g000003 Rmu_sc0002329.1_g000033 Rmu_sc0002833.1_g000044 Rmu_sc0004316.1_g000012 Rmu_sc0004439.1_g000003 Rmu_sc0006422.1_g000028 Rmu_sc0009479.1_g000012 Rmu_sc0010489.1_g000009 Rmu_sc0010489.1_g000010 Rmu_sc0017837.1_g000003 Rmu_sc0032320.1_g000001
rosa_roxburghii Rroxscaffold_1G00050770 Rroxscaffold_2G00133110 Rroxscaffold_2G00133140 Rroxscaffold_2G00133200 Rroxscaffold_2G00133270 Rroxscaffold_2G00133290 Rroxscaffold_2G00133300 Rroxscaffold_2G00133350 Rroxscaffold_4G00292490 Rroxscaffold_4G00309020 Rroxscaffold_4G00331740 Rroxscaffold_4G00331800 Rroxscaffold_6G00404470 Rroxscaffold_7G00197950 Rroxscaffold_7G00197990 Rroxscaffold_7G00198020
rosa_rugosa Rorug01G0002500 Rorug02G0047200 Rorug02G0047300 Rorug02G0047300 Rorug02G0047400 Rorug02G0168000 Rorug02G0168000 Rorug02G0168100 Rorug02G0168100 Rorug02G0168400.1 Rorug03G0157600 Rorug03G0157700 Rorug05G0112600 Rorug06G0054600 Rorug06G0054700
rosa_samantha Rh1AG013300 Rh1AG195600 Rh1AG195700 Rh1AG196000 Rh1BG004900 Rh1BG114300 Rh2AG132300 Rh2BG095500 Rh2BG229700 Rh2BG229800 Rh2CG097400 Rh2CG221500 Rh2CG221800 Rh2CG222100 Rh2CG222200 Rh2CG222500 Rh2CG222600 Rh2CG345000 Rh5BG269700 Rh6AG172900 Rh6AG173100 Rh6CG080500 Rh6DG075900 Rh6DG164700 Rh6DG164900 Rh6DG165200 Rh6DG165300
rosa_wichuraiana Rw0G015390 Rw1G000600 Rw1G016130 Rw1G016190 Rw2G007140 Rw2G016970 Rw2G016990 Rw2G017000 Rw3G018910 Rw3G018920 Rw3G018930 Rw5G024830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 330
AccI GTMKAC 1 cut(s) 5
AciI CCGC 1 cut(s) 45
AclWI GGATC 1 cut(s) 238
AcoI YGGCCR 1 cut(s) 132
AcsI RAATTY 2 cut(s) 80, 188
AfaI GTAC 2 cut(s) 183, 311
AfiI CCNNNNNNNGG 5 cut(s) 39, 130, 170, 330, 333
AgsI TTSAA 3 cut(s) 79, 104, 269
AjnI CCWGG 1 cut(s) 47
Alw26I GTCTC 1 cut(s) 195
AlwI GGATC 1 cut(s) 238
AoxI GGCC 2 cut(s) 42, 132
ApoI RAATTY 2 cut(s) 80, 188
AspS9I GGNCC 1 cut(s) 42
BalI TGGCCA 1 cut(s) 134
BccI CCATC 1 cut(s) 311
BciT130I CCWGG 1 cut(s) 49
BcoDI GTCTC 1 cut(s) 195
BfmI CTRYAG 1 cut(s) 6
BisI GCNGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 46
BmcAI AGTACT 1 cut(s) 311
Bme1390I CCNGG 1 cut(s) 49
BmgT120I GGNCC 1 cut(s) 42
BmiI GGNNCC 2 cut(s) 304, 322
BmrFI CCNGG 1 cut(s) 49
BmsI GCATC 1 cut(s) 209
BpuEI CTTGAG 1 cut(s) 70
Bsa29I ATCGAT 1 cut(s) 287
BsaJI CCNNGG 1 cut(s) 48
BsaXI ACNNNNNCTCC 2 cut(s) 192, 222
Bsc4I CCNNNNNNNGG 5 cut(s) 39, 130, 170, 330, 333
BseBI CCWGG 1 cut(s) 49
BseCI ATCGAT 1 cut(s) 287
BseDI CCNNGG 1 cut(s) 48
BseGI GGATG 1 cut(s) 224
BseLI CCNNNNNNNGG 5 cut(s) 39, 130, 170, 330, 333
BshFI GGCC 2 cut(s) 44, 134
BshVI ATCGAT 1 cut(s) 287
BslI CCNNNNNNNGG 5 cut(s) 39, 130, 170, 330, 333
BsmAI GTCTC 1 cut(s) 195
BsnI GGCC 2 cut(s) 44, 134
Bsp143I GATC 1 cut(s) 230
BspACI CCGC 1 cut(s) 45
BspANI GGCC 2 cut(s) 44, 134
BspDI ATCGAT 1 cut(s) 287
BspLI GGNNCC 2 cut(s) 304, 322
BspPI GGATC 1 cut(s) 238
BssECI CCNNGG 1 cut(s) 48
BssMI GATC 1 cut(s) 230
Bst2UI CCWGG 1 cut(s) 49
BstF5I GGATG 1 cut(s) 224
BstKTI GATC 1 cut(s) 233
BstMAI GTCTC 1 cut(s) 195
BstMBI GATC 1 cut(s) 230
BstNI CCWGG 1 cut(s) 49
BstSCI CCNGG 1 cut(s) 47
BstSFI CTRYAG 1 cut(s) 6
Bsu15I ATCGAT 1 cut(s) 287
BsuRI GGCC 2 cut(s) 44, 134
BsuTUI ATCGAT 1 cut(s) 287
BtsCI GGATG 1 cut(s) 224
BtsIMutI CAGTG 1 cut(s) 199
Cfr13I GGNCC 1 cut(s) 42
ClaI ATCGAT 1 cut(s) 287
Csp6I GTAC 2 cut(s) 182, 310
CviAII CATG 4 cut(s) 130, 223, 234, 330
CviJI RGCY 3 cut(s) 32, 44, 134
CviKI_1 RGCY 3 cut(s) 32, 44, 134
CviQI GTAC 2 cut(s) 182, 310
DpnI GATC 1 cut(s) 232
DpnII GATC 1 cut(s) 230
EaeI YGGCCR 1 cut(s) 132
EcoRII CCWGG 1 cut(s) 47
EcoT22I ATGCAT 1 cut(s) 224
FaeI CATG 4 cut(s) 133, 226, 237, 333
FaiI YATR 6 cut(s) 112, 131, 224, 235, 300, 331
FalI AAGNNNNNCTT 2 cut(s) 17, 49
FatI CATG 4 cut(s) 129, 222, 233, 329
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 1 cut(s) 45
FokI GGATG 1 cut(s) 231
Fsp4HI GCNGC 1 cut(s) 45
GluI GCNGC 1 cut(s) 45
HaeIII GGCC 2 cut(s) 44, 134
Hin1II CATG 4 cut(s) 133, 226, 237, 333
HinfI GANTC 1 cut(s) 53
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 2 cut(s) 121, 344
Hpy188III TCNNGA 2 cut(s) 87, 266
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 2 cut(s) 85, 134
HpyCH4IV ACGT 1 cut(s) 152
HpyCH4V TGCA 1 cut(s) 222
HpySE526I ACGT 1 cut(s) 152
Hsp92II CATG 4 cut(s) 133, 226, 237, 333
Kzo9I GATC 1 cut(s) 230
LmnI GCTCC 1 cut(s) 174
LpnPI CCDG 3 cut(s) 34, 45, 61
LweI GCATC 1 cut(s) 209
MaeII ACGT 1 cut(s) 152
MalI GATC 1 cut(s) 232
MboI GATC 1 cut(s) 230
MboII GAAGA 1 cut(s) 102
MlsI TGGCCA 1 cut(s) 134
MluCI AATT 3 cut(s) 80, 188, 271
MluNI TGGCCA 1 cut(s) 134
MmeI TCCRAC 3 cut(s) 178, 196, 282
MnlI CCTC 1 cut(s) 327
Mox20I TGGCCA 1 cut(s) 134
Mph1103I ATGCAT 1 cut(s) 224
MscI TGGCCA 1 cut(s) 134
MseI TTAA 1 cut(s) 338
Msp20I TGGCCA 1 cut(s) 134
MspR9I CCNGG 1 cut(s) 49
MvaI CCWGG 1 cut(s) 49
NdeII GATC 1 cut(s) 230
NlaIII CATG 4 cut(s) 133, 226, 237, 333
NlaIV GGNNCC 2 cut(s) 304, 322
NsiI ATGCAT 1 cut(s) 224
PfeI GAWTC 1 cut(s) 53
PflMI CCANNNNNTGG 1 cut(s) 330
PkrI GCNGC 1 cut(s) 46
Psp6I CCWGG 1 cut(s) 47
PspGI CCWGG 1 cut(s) 47
PspN4I GGNNCC 2 cut(s) 304, 322
PspPI GGNCC 1 cut(s) 42
RsaI GTAC 2 cut(s) 183, 311
RsaNI GTAC 2 cut(s) 182, 310
SaqAI TTAA 1 cut(s) 338
SatI GCNGC 1 cut(s) 45
Sau3AI GATC 1 cut(s) 230
Sau96I GGNCC 1 cut(s) 42
ScaI AGTACT 1 cut(s) 311
ScrFI CCNGG 1 cut(s) 49
SetI ASST 5 cut(s) 126, 155, 210, 214, 338
SfaNI GCATC 1 cut(s) 209
SfcI CTRYAG 1 cut(s) 6
SmlI CTYRAG 1 cut(s) 85
SmoI CTYRAG 1 cut(s) 85
Sse9I AATT 3 cut(s) 80, 188, 271
SsiI CCGC 1 cut(s) 45
StyD4I CCNGG 1 cut(s) 47
TaiI ACGT 1 cut(s) 155
TaqI TCGA 1 cut(s) 287
TasI AATT 3 cut(s) 80, 188, 271
TatI WGTACW 2 cut(s) 181, 309
TauI GCSGC 1 cut(s) 47
TfiI GAWTC 1 cut(s) 53
Tru1I TTAA 1 cut(s) 338
Tru9I TTAA 1 cut(s) 338
TscAI CASTG 1 cut(s) 199
TspDTI ATGAA 1 cut(s) 45
TspRI CASTG 1 cut(s) 199
Van91I CCANNNNNTGG 1 cut(s) 330
XapI RAATTY 2 cut(s) 80, 188
XmiI GTMKAC 1 cut(s) 5
ZrmI AGTACT 1 cut(s) 311
Zsp2I ATGCAT 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.