RchiOBHm_Chr1g0345451

Dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000167
Physical Location & Seq
Forward (+)
37787181 .. 37787351
171 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57177

Sequence Viewer

Length: 171 bp
ATGAAGGAGACACAAAAGATGATCAATTTTGCAGCCAAGCACAACCTAACAGCAGACATCGAGGTTATCCCAATTGACTACTTGAACACTGCCATGGAGCACCTTGCCAAAGCAGACGTCAGATACCGTTTTGTCATTGACATTGGAAACACACTGAAGGCTAGATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
ADH_N ADH_zinc_N

Protein Analysis

56

Amino Acids

6.42

Weight (kDa)

8.11

Isoelectric Point (pI)

16.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37980 AT4G37980 AT4G37990
fragaria_vesca FvH4_1g19210 FvH4_1g19220 FvH4_1g19240 FvH4_1g19240 FvH4_1g19261 FvH4_1g19262 FvH4_1g19263 FvH4_1g19263 FvH4_1g19265 FvH4_1g19281 FvH4_1g19281 FvH4_7g07240 FvH4_7g07240 FvH4_7g07240
malus_domestica MD01G1042500.v1.1 MD01G1042600.v1.1 MD01G1042800.v1.1 MD01G1042900.v1.1 MD05G1034100.v1.1 MD10G1035900.v1.1 MD10G1036000.v1.1 MD10G1155000.v1.1 MD10G1155100.v1.1 MD10G1155200.v1.1 MD10G1155400.v1.1 MD10G1155700.v1.1 MD10G1155800.v1.1 MD15G1308800.v1.1 MD15G1308900.v1.1
prunus_persica Prupe.6G205600_v2.0.a1 Prupe.6G205700_v2.0.a1 Prupe.6G205800_v2.0.a1 Prupe.6G205900_v2.0.a1 Prupe.6G206300_v2.0.a1 Prupe.6G206800_v2.0.a1 Prupe.6G207100_v2.0.a1 Prupe.6G207200_v2.0.a1 Prupe.6G207300_v2.0.a1 Prupe.6G207400_v2.0.a1 Prupe.6G207500_v2.0.a1 Prupe.6G207600_v2.0.a1 Prupe.6G207700_v2.0.a1 Prupe.6G207900_v2.0.a1
pyrus_communis pycom01g06970 pycom01g06980 pycom01g06990 pycom05g02460 pycom08g00750 pycom10g13410 pycom15g27310 pycom15g27320
rosa_chinensis RchiOBHm_Chr1g0314861 RchiOBHm_Chr1g0345441 RchiOBHm_Chr1g0345451 RchiOBHm_Chr1g0345621 RchiOBHm_Chr1g0345751 RchiOBHm_Chr1g0345861 RchiOBHm_Chr1g0345871 RchiOBHm_Chr1g0345891 RchiOBHm_Chr2g0094851 RchiOBHm_Chr2g0110471 RchiOBHm_Chr2g0110511 RchiOBHm_Chr2g0110531 RchiOBHm_Chr2g0110541 RchiOBHm_Chr2g0110571 RchiOBHm_Chr5g0039381 RchiOBHm_Chr5g0039391 RchiOBHm_Chr6g0270311 RchiOBHm_Chr6g0270331 RchiOBHm_Chr6g0270411 RchiOBHm_Chr6g0270431
rosa_laevigata RLG00000000515 RLG00000013793 RLG00000013797 RLG00000013799 RLG00000016525 RLG00000017808 RLG00000017811 RLG00000017813 RLG00000017816 RLG00000017819 RLG00000017822 RLG00000017824 RLG00000017825 RLG00000028835
rosa_multiflora Rmu_co8225458.1_g000001 Rmu_sc0000389.1_g000006 Rmu_sc0000389.1_g000014 Rmu_sc0000389.1_g000023 Rmu_sc0001292.1_g000012 Rmu_sc0001292.1_g000026 Rmu_sc0002145.1_g000003 Rmu_sc0002329.1_g000033 Rmu_sc0002833.1_g000044 Rmu_sc0004316.1_g000012 Rmu_sc0004439.1_g000003 Rmu_sc0006422.1_g000028 Rmu_sc0009479.1_g000012 Rmu_sc0010489.1_g000009 Rmu_sc0010489.1_g000010 Rmu_sc0017837.1_g000003 Rmu_sc0032320.1_g000001
rosa_roxburghii Rroxscaffold_1G00050770 Rroxscaffold_2G00133110 Rroxscaffold_2G00133140 Rroxscaffold_2G00133200 Rroxscaffold_2G00133270 Rroxscaffold_2G00133290 Rroxscaffold_2G00133300 Rroxscaffold_2G00133350 Rroxscaffold_4G00292490 Rroxscaffold_4G00309020 Rroxscaffold_4G00331740 Rroxscaffold_4G00331800 Rroxscaffold_6G00404470 Rroxscaffold_7G00197950 Rroxscaffold_7G00197990 Rroxscaffold_7G00198020
rosa_rugosa Rorug01G0002500 Rorug02G0047200 Rorug02G0047300 Rorug02G0047300 Rorug02G0047400 Rorug02G0168000 Rorug02G0168000 Rorug02G0168100 Rorug02G0168100 Rorug02G0168400.1 Rorug03G0157600 Rorug03G0157700 Rorug05G0112600 Rorug06G0054600 Rorug06G0054700
rosa_samantha Rh1AG013300 Rh1AG195600 Rh1AG195700 Rh1AG196000 Rh1BG004900 Rh1BG114300 Rh2AG132300 Rh2BG095500 Rh2BG229700 Rh2BG229800 Rh2CG097400 Rh2CG221500 Rh2CG221800 Rh2CG222100 Rh2CG222200 Rh2CG222500 Rh2CG222600 Rh2CG345000 Rh5BG269700 Rh6AG172900 Rh6AG173100 Rh6CG080500 Rh6DG075900 Rh6DG164700 Rh6DG164900 Rh6DG165200 Rh6DG165300
rosa_wichuraiana Rw0G015390 Rw1G000600 Rw1G016130 Rw1G016190 Rw2G007140 Rw2G016970 Rw2G016990 Rw2G017000 Rw3G018910 Rw3G018920 Rw3G018930 Rw5G024830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 120
AcyI GRCGYC 1 cut(s) 117
AgsI TTSAA 1 cut(s) 85
Alw21I GWGCWC 1 cut(s) 102
Alw26I GTCTC 1 cut(s) 2
ApeKI GCWGC 1 cut(s) 32
ArsI GACNNNNNNTTYG 2 cut(s) 102, 134
Bbv12I GWGCWC 1 cut(s) 102
BbvI GCAGC 1 cut(s) 44
BclI TGATCA 1 cut(s) 21
BcoDI GTCTC 1 cut(s) 2
BfaI CTAG 1 cut(s) 162
BglII AGATCT 1 cut(s) 164
BisI GCNGC 1 cut(s) 33
BlsI GCNGC 1 cut(s) 34
BsaHI GRCGYC 1 cut(s) 117
BsaJI CCNNGG 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 93
BseXI GCAGC 1 cut(s) 44
BsiHKAI GWGCWC 1 cut(s) 102
BsmAI GTCTC 1 cut(s) 2
Bsp1286I GDGCHC 1 cut(s) 102
Bsp143I GATC 2 cut(s) 21, 164
Bsp19I CCATGG 1 cut(s) 93
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 2 cut(s) 21, 164
BssNI GRCGYC 1 cut(s) 117
BssT1I CCWWGG 1 cut(s) 93
Bst4CI ACNGT 1 cut(s) 128
BstACI GRCGYC 1 cut(s) 117
BstDSI CCRYGG 1 cut(s) 93
BstKTI GATC 2 cut(s) 24, 167
BstMAI GTCTC 1 cut(s) 2
BstMBI GATC 2 cut(s) 21, 164
BstV1I GCAGC 1 cut(s) 44
BstX2I RGATCY 1 cut(s) 164
BstYI RGATCY 1 cut(s) 164
BtgI CCRYGG 1 cut(s) 93
BtsI GCAGTG 1 cut(s) 87
BtsIMutI CAGTG 2 cut(s) 87, 152
CviAII CATG 1 cut(s) 94
CviJI RGCY 2 cut(s) 35, 161
CviKI_1 RGCY 2 cut(s) 35, 161
DpnI GATC 2 cut(s) 23, 166
DpnII GATC 2 cut(s) 21, 164
Eco130I CCWWGG 1 cut(s) 93
EcoT14I CCWWGG 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 93
FaeI CATG 1 cut(s) 97
FaiI YATR 1 cut(s) 95
FatI CATG 1 cut(s) 93
FbaI TGATCA 1 cut(s) 21
Fnu4HI GCNGC 1 cut(s) 33
Fsp4HI GCNGC 1 cut(s) 33
FspBI CTAG 1 cut(s) 162
GluI GCNGC 1 cut(s) 33
Hin1I GRCGYC 1 cut(s) 117
Hin1II CATG 1 cut(s) 97
Hpy188I TCNGA 1 cut(s) 122
HpyAV CCTTC 1 cut(s) 151
HpyCH4III ACNGT 1 cut(s) 128
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 1 cut(s) 32
HpySE526I ACGT 1 cut(s) 117
Hsp92I GRCGYC 1 cut(s) 117
Hsp92II CATG 1 cut(s) 97
Ksp22I TGATCA 1 cut(s) 21
Kzo9I GATC 2 cut(s) 21, 164
LmnI GCTCC 1 cut(s) 97
Lsp1109I GCAGC 1 cut(s) 44
MaeI CTAG 1 cut(s) 162
MaeII ACGT 1 cut(s) 117
MalI GATC 2 cut(s) 23, 166
MboI GATC 2 cut(s) 21, 164
MfeI CAATTG 1 cut(s) 72
MflI RGATCY 1 cut(s) 164
MhlI GDGCHC 1 cut(s) 102
MluCI AATT 2 cut(s) 25, 72
MnlI CCTC 1 cut(s) 55
MseI TTAA 1 cut(s) 169
MslI CAYNNNNRTG 1 cut(s) 92
MunI CAATTG 1 cut(s) 72
NcoI CCATGG 1 cut(s) 93
NdeII GATC 2 cut(s) 21, 164
NlaIII CATG 1 cut(s) 97
PkrI GCNGC 1 cut(s) 34
PsuI RGATCY 1 cut(s) 164
RseI CAYNNNNRTG 1 cut(s) 92
SaqAI TTAA 1 cut(s) 169
SatI GCNGC 1 cut(s) 33
Sau3AI GATC 2 cut(s) 21, 164
SduI GDGCHC 1 cut(s) 102
SetI ASST 4 cut(s) 48, 66, 105, 120
SgeI CNNG 5 cut(s) 49, 73, 94, 106, 116
SmiMI CAYNNNNRTG 1 cut(s) 92
Sse9I AATT 2 cut(s) 25, 72
SspMI CTAG 1 cut(s) 162
StyI CCWWGG 1 cut(s) 93
TaaI ACNGT 1 cut(s) 128
TaiI ACGT 1 cut(s) 120
TaqI TCGA 1 cut(s) 60
TasI AATT 2 cut(s) 25, 72
Tru1I TTAA 1 cut(s) 169
Tru9I TTAA 1 cut(s) 169
TscAI CASTG 2 cut(s) 94, 159
TseI GCWGC 1 cut(s) 32
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 94, 159
XspI CTAG 1 cut(s) 162
ZraI GACGTC 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.