Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000167

Physical Location & Seq

Genomic Coordinates Forward (+)

71265842 .. 71270129

Gene Structure 4288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00050770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGCACAACGCCATGTCCGTCGAGATTATCATGTTGGAACCTGCTTTCTCGACGGCACGATGCTTCGAATGGTCTCTCTCAAGGTGGAACTTGCTCTTGCGAGGGACGTATTTCTAGATAGCATCGGTGGGATTGAAGTAGAAGACCAATTGGTCTTGGAAGATGTTGAGGACAATCACGATGAAGCCGGCGATGCGTTGAAGATGAAGCCGGCGATGCGATTTGAAGATGAAGCCGGCGATGCGATTGAAGATGAAGTCGCAGTCGAAGGGCGGTGGGAAGAGGTGAAGCGGAAAGGGAGAAATTTGGATAGGAGGGAACGAGTGGCGCTCCAACATGCCAAATCTCTTTTCTCAAAAGAGGCAAGTGCAACTCTACTAAATTTATATGTTATACTCATTTATGAGTTCATAGAAATGGTCATTGATGTGACTGCAGCCAGCACAAATGACATGGGGCCTTTGAGTCCTAATTTCTTCAGAAAAAACATTTTGTCAGCTTCGTGGAAAGTCATTGGGGAAAAGACATCGGTTGTAACAGATCCCGAGCTGTTGGGTCGGGTGCACCGCAATTTTGGCATAGACAATCTTCTCTTTAGAGGTCTAGAGGTCGTTCTCGCTCGGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009664 GO:0009832 GO:0009987 GO:0010289 GO:0010383 GO:0010393 GO:0010394 GO:0012505 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0017144 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0045489 GO:0047262 GO:0052325 GO:0052546 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

209

Amino Acids

23.62

Weight (kDa)

5.05

Isoelectric Point (pI)

41.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000167)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37980 AT4G37980 AT4G37990
fragaria_vesca	FvH4_1g19210 FvH4_1g19220 FvH4_1g19240 FvH4_1g19240 FvH4_1g19261 FvH4_1g19262 FvH4_1g19263 FvH4_1g19263 FvH4_1g19265 FvH4_1g19281 FvH4_1g19281 FvH4_7g07240 FvH4_7g07240 FvH4_7g07240
malus_domestica	MD01G1042500.v1.1 MD01G1042600.v1.1 MD01G1042800.v1.1 MD01G1042900.v1.1 MD05G1034100.v1.1 MD10G1035900.v1.1 MD10G1036000.v1.1 MD10G1155000.v1.1 MD10G1155100.v1.1 MD10G1155200.v1.1 MD10G1155400.v1.1 MD10G1155700.v1.1 MD10G1155800.v1.1 MD15G1308800.v1.1 MD15G1308900.v1.1
prunus_persica	Prupe.6G205600_v2.0.a1 Prupe.6G205700_v2.0.a1 Prupe.6G205800_v2.0.a1 Prupe.6G205900_v2.0.a1 Prupe.6G206300_v2.0.a1 Prupe.6G206800_v2.0.a1 Prupe.6G207100_v2.0.a1 Prupe.6G207200_v2.0.a1 Prupe.6G207300_v2.0.a1 Prupe.6G207400_v2.0.a1 Prupe.6G207500_v2.0.a1 Prupe.6G207600_v2.0.a1 Prupe.6G207700_v2.0.a1 Prupe.6G207900_v2.0.a1
pyrus_communis	pycom01g06970 pycom01g06980 pycom01g06990 pycom05g02460 pycom08g00750 pycom10g13410 pycom15g27310 pycom15g27320
rosa_chinensis	RchiOBHm_Chr1g0314861 RchiOBHm_Chr1g0345441 RchiOBHm_Chr1g0345451 RchiOBHm_Chr1g0345621 RchiOBHm_Chr1g0345751 RchiOBHm_Chr1g0345861 RchiOBHm_Chr1g0345871 RchiOBHm_Chr1g0345891 RchiOBHm_Chr2g0094851 RchiOBHm_Chr2g0110471 RchiOBHm_Chr2g0110511 RchiOBHm_Chr2g0110531 RchiOBHm_Chr2g0110541 RchiOBHm_Chr2g0110571 RchiOBHm_Chr5g0039381 RchiOBHm_Chr5g0039391 RchiOBHm_Chr6g0270311 RchiOBHm_Chr6g0270331 RchiOBHm_Chr6g0270411 RchiOBHm_Chr6g0270431
rosa_laevigata	RLG00000000515 RLG00000013793 RLG00000013797 RLG00000013799 RLG00000016525 RLG00000017808 RLG00000017811 RLG00000017813 RLG00000017816 RLG00000017819 RLG00000017822 RLG00000017824 RLG00000017825 RLG00000028835
rosa_multiflora	Rmu_co8225458.1_g000001 Rmu_sc0000389.1_g000006 Rmu_sc0000389.1_g000014 Rmu_sc0000389.1_g000023 Rmu_sc0001292.1_g000012 Rmu_sc0001292.1_g000026 Rmu_sc0002145.1_g000003 Rmu_sc0002329.1_g000033 Rmu_sc0002833.1_g000044 Rmu_sc0004316.1_g000012 Rmu_sc0004439.1_g000003 Rmu_sc0006422.1_g000028 Rmu_sc0009479.1_g000012 Rmu_sc0010489.1_g000009 Rmu_sc0010489.1_g000010 Rmu_sc0017837.1_g000003 Rmu_sc0032320.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050770 Rroxscaffold_2G00133110 Rroxscaffold_2G00133140 Rroxscaffold_2G00133200 Rroxscaffold_2G00133270 Rroxscaffold_2G00133290 Rroxscaffold_2G00133300 Rroxscaffold_2G00133350 Rroxscaffold_4G00292490 Rroxscaffold_4G00309020 Rroxscaffold_4G00331740 Rroxscaffold_4G00331800 Rroxscaffold_6G00404470 Rroxscaffold_7G00197950 Rroxscaffold_7G00197990 Rroxscaffold_7G00198020
rosa_rugosa	Rorug01G0002500 Rorug02G0047200 Rorug02G0047300 Rorug02G0047300 Rorug02G0047400 Rorug02G0168000 Rorug02G0168000 Rorug02G0168100 Rorug02G0168100 Rorug02G0168400.1 Rorug03G0157600 Rorug03G0157700 Rorug05G0112600 Rorug06G0054600 Rorug06G0054700
rosa_samantha	Rh1AG013300 Rh1AG195600 Rh1AG195700 Rh1AG196000 Rh1BG004900 Rh1BG114300 Rh2AG132300 Rh2BG095500 Rh2BG229700 Rh2BG229800 Rh2CG097400 Rh2CG221500 Rh2CG221800 Rh2CG222100 Rh2CG222200 Rh2CG222500 Rh2CG222600 Rh2CG345000 Rh5BG269700 Rh6AG172900 Rh6AG173100 Rh6CG080500 Rh6DG075900 Rh6DG164700 Rh6DG164900 Rh6DG165200 Rh6DG165300
rosa_wichuraiana	Rw0G015390 Rw1G000600 Rw1G016130 Rw1G016190 Rw2G007140 Rw2G016970 Rw2G016990 Rw2G017000 Rw3G018910 Rw3G018920 Rw3G018930 Rw5G024830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	152
Acc36I	ACCTGC	1 cut(s)	50
AciI	CCGC	3 cut(s)	274, 292, 568
AclWI	GGATC	1 cut(s)	536
AcsI	RAATTY	2 cut(s)	304, 382
AcuI	CTGAAG	1 cut(s)	463
AgsI	TTSAA	4 cut(s)	137, 202, 227, 251
AjuI	GAANNNNNNNTTGG	2 cut(s)	335, 367
AluBI	AGCT	2 cut(s)	500, 550
AluI	AGCT	2 cut(s)	500, 550
Alw21I	GWGCWC	1 cut(s)	567
Alw26I	GTCTC	1 cut(s)	79
Alw44I	GTGCAC	1 cut(s)	563
AlwI	GGATC	1 cut(s)	536
Ama87I	CYCGRG	1 cut(s)	545
AoxI	GGCC	1 cut(s)	458
ApaLI	GTGCAC	1 cut(s)	563
ApeKI	GCWGC	1 cut(s)	437
ApoI	RAATTY	2 cut(s)	304, 382
AspLEI	GCGC	1 cut(s)	331
AspS9I	GGNCC	1 cut(s)	458
AsuHPI	GGTGA	1 cut(s)	298
AsuII	TTCGAA	1 cut(s)	67
AvaI	CYCGRG	1 cut(s)	545
BaeGI	GKGCMC	1 cut(s)	567
BbsI	GAAGAC	1 cut(s)	150
Bbv12I	GWGCWC	1 cut(s)	567
BbvI	GCAGC	1 cut(s)	449
BceAI	ACGGC	1 cut(s)	70
BcoDI	GTCTC	1 cut(s)	79
BfaI	CTAG	2 cut(s)	116, 605
BfmI	CTRYAG	1 cut(s)	435
BfoI	RGCGCY	1 cut(s)	332
BfuAI	ACCTGC	1 cut(s)	50
BisI	GCNGC	1 cut(s)	438
BlsI	GCNGC	1 cut(s)	439
BmeT110I	CYCGRG	1 cut(s)	545
BmgT120I	GGNCC	1 cut(s)	458
BmiI	GGNNCC	2 cut(s)	40, 459
BmsI	GCATC	5 cut(s)	51, 132, 184, 207, 232
BpiI	GAAGAC	1 cut(s)	150
BplI	GAGNNNNNCTC	2 cut(s)	315, 347
Bpu14I	TTCGAA	1 cut(s)	67
BpuEI	CTTGAG	1 cut(s)	65
BsaI	GGTCTC	1 cut(s)	79
Bse118I	RCCGGY	3 cut(s)	188, 211, 236
BseSI	GKGCMC	1 cut(s)	567
BseXI	GCAGC	1 cut(s)	449
BshFI	GGCC	1 cut(s)	460
BsiHKAI	GWGCWC	1 cut(s)	567
BsiHKCI	CYCGRG	1 cut(s)	545
BsiSI	CCGG	3 cut(s)	189, 212, 237
BslFI	GGGAC	1 cut(s)	119
BsmAI	GTCTC	1 cut(s)	79
BsmFI	GGGAC	1 cut(s)	119
BsnI	GGCC	1 cut(s)	460
Bso31I	GGTCTC	1 cut(s)	79
BsoBI	CYCGRG	1 cut(s)	545
Bsp119I	TTCGAA	1 cut(s)	67
Bsp1286I	GDGCHC	1 cut(s)	567
Bsp143I	GATC	1 cut(s)	541
BspACI	CCGC	3 cut(s)	274, 292, 568
BspANI	GGCC	1 cut(s)	460
BspLI	GGNNCC	2 cut(s)	40, 459
BspMAI	CTGCAG	1 cut(s)	439
BspMI	ACCTGC	1 cut(s)	50
BspPI	GGATC	1 cut(s)	536
BspT104I	TTCGAA	1 cut(s)	67
BspTNI	GGTCTC	1 cut(s)	79
BsrFI	RCCGGY	3 cut(s)	188, 211, 236
BssAI	RCCGGY	3 cut(s)	188, 211, 236
BssMI	GATC	1 cut(s)	541
Bst6I	CTCTTC	1 cut(s)	276
BstBI	TTCGAA	1 cut(s)	67
BstC8I	GCNNGC	4 cut(s)	190, 213, 238, 442
BstH2I	RGCGCY	1 cut(s)	332
BstHHI	GCGC	1 cut(s)	331
BstKTI	GATC	1 cut(s)	544
BstMAI	GTCTC	1 cut(s)	79
BstMBI	GATC	1 cut(s)	541
BstMWI	GCNNNNNNNGC	4 cut(s)	194, 217, 242, 576
BstNSI	RCATGY	1 cut(s)	341
BstSFI	CTRYAG	1 cut(s)	435
BstSLI	GKGCMC	1 cut(s)	567
BstV1I	GCAGC	1 cut(s)	449
BstV2I	GAAGAC	1 cut(s)	150
BstX2I	RGATCY	1 cut(s)	541
BstYI	RGATCY	1 cut(s)	541
BsuRI	GGCC	1 cut(s)	460
BtgZI	GCGATG	3 cut(s)	207, 230, 255
BveI	ACCTGC	1 cut(s)	50
Cac8I	GCNNGC	4 cut(s)	190, 213, 238, 442
CfoI	GCGC	1 cut(s)	331
Cfr10I	RCCGGY	3 cut(s)	188, 211, 236
Cfr13I	GGNCC	1 cut(s)	458
CviAII	CATG	4 cut(s)	14, 32, 338, 454
CviJI	RGCY	7 cut(s)	188, 211, 236, 440, 460, 500, 550
CviKI_1	RGCY	7 cut(s)	188, 211, 236, 440, 460, 500, 550
DpnI	GATC	1 cut(s)	543
DpnII	GATC	1 cut(s)	541
DrdI	GACNNNNNNGTC	1 cut(s)	152
DseDI	GACNNNNNNGTC	1 cut(s)	152
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
Eco31I	GGTCTC	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	463
Eco88I	CYCGRG	1 cut(s)	545
EcoO109I	RGGNCCY	1 cut(s)	458
FaeI	CATG	4 cut(s)	17, 35, 341, 457
FaqI	GGGAC	1 cut(s)	119
FatI	CATG	4 cut(s)	13, 31, 337, 453
Fnu4HI	GCNGC	1 cut(s)	438
Fsp4HI	GCNGC	1 cut(s)	438
FspBI	CTAG	2 cut(s)	116, 605
GlaI	GCGC	1 cut(s)	330
GluI	GCNGC	1 cut(s)	438
HaeII	RGCGCY	1 cut(s)	332
HaeIII	GGCC	1 cut(s)	460
HapII	CCGG	3 cut(s)	189, 212, 237
HhaI	GCGC	1 cut(s)	331
Hin1II	CATG	4 cut(s)	17, 35, 341, 457
Hin6I	GCGC	1 cut(s)	329
HinP1I	GCGC	1 cut(s)	329
HinfI	GANTC	1 cut(s)	466
HpaII	CCGG	3 cut(s)	189, 212, 237
HphI	GGTGA	1 cut(s)	298
Hpy166II	GTNNAC	1 cut(s)	565
Hpy188I	TCNGA	2 cut(s)	482, 624
Hpy188III	TCNNGA	6 cut(s)	23, 50, 116, 179, 545, 605
Hpy8I	GTNNAC	1 cut(s)	565
Hpy99I	CGWCG	2 cut(s)	24, 56
HpyAV	CCTTC	1 cut(s)	263
HpyCH4IV	ACGT	1 cut(s)	108
HpyCH4V	TGCA	3 cut(s)	371, 437, 565
HpyF10VI	GCNNNNNNNGC	4 cut(s)	194, 217, 242, 576
HpySE526I	ACGT	1 cut(s)	108
Hsp92II	CATG	4 cut(s)	17, 35, 341, 457
HspAI	GCGC	1 cut(s)	329
KroI	GCCGGC	3 cut(s)	188, 211, 236
KroNI	GCCGGC	3 cut(s)	190, 213, 238
Kzo9I	GATC	1 cut(s)	541
LmnI	GCTCC	1 cut(s)	336
LpnPI	CCDG	5 cut(s)	55, 202, 225, 250, 454
Lsp1109I	GCAGC	1 cut(s)	449
LweI	GCATC	5 cut(s)	51, 132, 184, 207, 232
MaeI	CTAG	2 cut(s)	116, 605
MaeII	ACGT	1 cut(s)	108
MaeIII	GTNAC	2 cut(s)	430, 535
MalI	GATC	1 cut(s)	543
MboI	GATC	1 cut(s)	541
MboII	GAAGA	8 cut(s)	155, 173, 214, 239, 263, 293, 469, 581
MfeI	CAATTG	1 cut(s)	149
MflI	RGATCY	1 cut(s)	541
MhlI	GDGCHC	1 cut(s)	567
MluCI	AATT	5 cut(s)	149, 304, 382, 472, 571
MlyI	GAGTC	1 cut(s)	475
MmeI	TCCRAC	2 cut(s)	16, 358
MnlI	CCTC	7 cut(s)	96, 163, 277, 309, 355, 593, 601
MroNI	GCCGGC	3 cut(s)	188, 211, 236
MslI	CAYNNNNRTG	2 cut(s)	416, 428
MspI	CCGG	3 cut(s)	189, 212, 237
MunI	CAATTG	1 cut(s)	149
MwoI	GCNNNNNNNGC	4 cut(s)	194, 217, 242, 576
NaeI	GCCGGC	3 cut(s)	190, 213, 238
NdeII	GATC	1 cut(s)	541
NgoMIV	GCCGGC	3 cut(s)	188, 211, 236
NlaIII	CATG	4 cut(s)	17, 35, 341, 457
NlaIV	GGNNCC	2 cut(s)	40, 459
NmuCI	GTSAC	1 cut(s)	430
NspI	RCATGY	1 cut(s)	341
NspV	TTCGAA	1 cut(s)	67
PcsI	WCGNNNNNNNCGW	1 cut(s)	16
PdiI	GCCGGC	3 cut(s)	190, 213, 238
PkrI	GCNGC	1 cut(s)	439
PleI	GAGTC	1 cut(s)	474
PpsI	GAGTC	1 cut(s)	474
PspN4I	GGNNCC	2 cut(s)	40, 459
PspPI	GGNCC	1 cut(s)	458
PstI	CTGCAG	1 cut(s)	439
PsuI	RGATCY	1 cut(s)	541
RseI	CAYNNNNRTG	2 cut(s)	416, 428
SatI	GCNGC	1 cut(s)	438
Sau3AI	GATC	1 cut(s)	541
Sau96I	GGNCC	1 cut(s)	458
SchI	GAGTC	1 cut(s)	475
SduI	GDGCHC	1 cut(s)	567
SetI	ASST	8 cut(s)	44, 87, 111, 288, 502, 552, 604, 612
SfaNI	GCATC	5 cut(s)	51, 132, 184, 207, 232
SfcI	CTRYAG	1 cut(s)	435
SfuI	TTCGAA	1 cut(s)	67
SmiMI	CAYNNNNRTG	2 cut(s)	416, 428
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
Sse9I	AATT	5 cut(s)	149, 304, 382, 472, 571
SsiI	CCGC	3 cut(s)	274, 292, 568
SspMI	CTAG	2 cut(s)	116, 605
TaiI	ACGT	1 cut(s)	111
TaqI	TCGA	4 cut(s)	22, 51, 67, 267
TasI	AATT	5 cut(s)	149, 304, 382, 472, 571
TseFI	GTSAC	1 cut(s)	430
TseI	GCWGC	1 cut(s)	437
Tsp45I	GTSAC	1 cut(s)	430
TspDTI	ATGAA	5 cut(s)	198, 221, 246, 270, 400
TspGWI	ACGGA	1 cut(s)	8
VneI	GTGCAC	1 cut(s)	563
XapI	RAATTY	2 cut(s)	304, 382
XbaI	TCTAGA	2 cut(s)	115, 604
XceI	RCATGY	1 cut(s)	341
XspI	CTAG	2 cut(s)	116, 605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.