FvH4_1g19220

Dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000167
Physical Location & Seq
Forward (+)
11435973 .. 11436818
846 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g19220.t1

Sequence Viewer

Length: 552 bp
ATGGTGGCTGATGAGCACTATGTAGTCCGCATGCCAGAAAACCTACCTCTTGATGGCGCTGCCCCTCTCCTGTGTGCCGGGATTACAACTTACAGCCCCTTGAGATATTATGGCCTTGACAAGCCAGTGATCAGTACCTCCCCTAATAAGAAGGATGAAGCTATGCAGCGTTTACACGCTGACTCGTTTTTGGTCAGTTGTGACGAAAATCAGATGCAGGCTGCGATGGGCACAATGGATGGTATCCTCGACACAGTATCTGTAACCCACCCTCTCCCGCCTTTGCTGAGTTTGTTGAAGGCTAATGGAAAGCTTGTTATGGTTGGCGCACCAGAAAAGCCTCTTGAGCTTCCAGCTTATTCTTTGATCGGGGGAAGGAAGTTAGTAGCTGGTAGCTGTGTGGGAGGATTGAAGGAGACACAGGAGATGATCGACTTTGCAGCCAAGCACAATATAACGGCTGACATTGCAGTCATGGAACGCCTTCTCAAAGCAGACGTGAGATACCGATTCGTCATCGACATTGGAAACACATTGAAGGCGGACCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
ADH_N ADH_zinc_N

Protein Analysis

184

Amino Acids

19.82

Weight (kDa)

5.54

Isoelectric Point (pI)

27.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_zinc_N PF00107 43 - 148 1.2e-11 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37980 AT4G37980 AT4G37990
fragaria_vesca FvH4_1g19210 FvH4_1g19220 FvH4_1g19240 FvH4_1g19240 FvH4_1g19261 FvH4_1g19262 FvH4_1g19263 FvH4_1g19263 FvH4_1g19265 FvH4_1g19281 FvH4_1g19281 FvH4_7g07240 FvH4_7g07240 FvH4_7g07240
malus_domestica MD01G1042500.v1.1 MD01G1042600.v1.1 MD01G1042800.v1.1 MD01G1042900.v1.1 MD05G1034100.v1.1 MD10G1035900.v1.1 MD10G1036000.v1.1 MD10G1155000.v1.1 MD10G1155100.v1.1 MD10G1155200.v1.1 MD10G1155400.v1.1 MD10G1155700.v1.1 MD10G1155800.v1.1 MD15G1308800.v1.1 MD15G1308900.v1.1
prunus_persica Prupe.6G205600_v2.0.a1 Prupe.6G205700_v2.0.a1 Prupe.6G205800_v2.0.a1 Prupe.6G205900_v2.0.a1 Prupe.6G206300_v2.0.a1 Prupe.6G206800_v2.0.a1 Prupe.6G207100_v2.0.a1 Prupe.6G207200_v2.0.a1 Prupe.6G207300_v2.0.a1 Prupe.6G207400_v2.0.a1 Prupe.6G207500_v2.0.a1 Prupe.6G207600_v2.0.a1 Prupe.6G207700_v2.0.a1 Prupe.6G207900_v2.0.a1
pyrus_communis pycom01g06970 pycom01g06980 pycom01g06990 pycom05g02460 pycom08g00750 pycom10g13410 pycom15g27310 pycom15g27320
rosa_chinensis RchiOBHm_Chr1g0314861 RchiOBHm_Chr1g0345441 RchiOBHm_Chr1g0345451 RchiOBHm_Chr1g0345621 RchiOBHm_Chr1g0345751 RchiOBHm_Chr1g0345861 RchiOBHm_Chr1g0345871 RchiOBHm_Chr1g0345891 RchiOBHm_Chr2g0094851 RchiOBHm_Chr2g0110471 RchiOBHm_Chr2g0110511 RchiOBHm_Chr2g0110531 RchiOBHm_Chr2g0110541 RchiOBHm_Chr2g0110571 RchiOBHm_Chr5g0039381 RchiOBHm_Chr5g0039391 RchiOBHm_Chr6g0270311 RchiOBHm_Chr6g0270331 RchiOBHm_Chr6g0270411 RchiOBHm_Chr6g0270431
rosa_laevigata RLG00000000515 RLG00000013793 RLG00000013797 RLG00000013799 RLG00000016525 RLG00000017808 RLG00000017811 RLG00000017813 RLG00000017816 RLG00000017819 RLG00000017822 RLG00000017824 RLG00000017825 RLG00000028835
rosa_multiflora Rmu_co8225458.1_g000001 Rmu_sc0000389.1_g000006 Rmu_sc0000389.1_g000014 Rmu_sc0000389.1_g000023 Rmu_sc0001292.1_g000012 Rmu_sc0001292.1_g000026 Rmu_sc0002145.1_g000003 Rmu_sc0002329.1_g000033 Rmu_sc0002833.1_g000044 Rmu_sc0004316.1_g000012 Rmu_sc0004439.1_g000003 Rmu_sc0006422.1_g000028 Rmu_sc0009479.1_g000012 Rmu_sc0010489.1_g000009 Rmu_sc0010489.1_g000010 Rmu_sc0017837.1_g000003 Rmu_sc0032320.1_g000001
rosa_roxburghii Rroxscaffold_1G00050770 Rroxscaffold_2G00133110 Rroxscaffold_2G00133140 Rroxscaffold_2G00133200 Rroxscaffold_2G00133270 Rroxscaffold_2G00133290 Rroxscaffold_2G00133300 Rroxscaffold_2G00133350 Rroxscaffold_4G00292490 Rroxscaffold_4G00309020 Rroxscaffold_4G00331740 Rroxscaffold_4G00331800 Rroxscaffold_6G00404470 Rroxscaffold_7G00197950 Rroxscaffold_7G00197990 Rroxscaffold_7G00198020
rosa_rugosa Rorug01G0002500 Rorug02G0047200 Rorug02G0047300 Rorug02G0047300 Rorug02G0047400 Rorug02G0168000 Rorug02G0168000 Rorug02G0168100 Rorug02G0168100 Rorug02G0168400.1 Rorug03G0157600 Rorug03G0157700 Rorug05G0112600 Rorug06G0054600 Rorug06G0054700
rosa_samantha Rh1AG013300 Rh1AG195600 Rh1AG195700 Rh1AG196000 Rh1BG004900 Rh1BG114300 Rh2AG132300 Rh2BG095500 Rh2BG229700 Rh2BG229800 Rh2CG097400 Rh2CG221500 Rh2CG221800 Rh2CG222100 Rh2CG222200 Rh2CG222500 Rh2CG222600 Rh2CG345000 Rh5BG269700 Rh6AG172900 Rh6AG173100 Rh6CG080500 Rh6DG075900 Rh6DG164700 Rh6DG164900 Rh6DG165200 Rh6DG165300
rosa_wichuraiana Rw0G015390 Rw1G000600 Rw1G016130 Rw1G016190 Rw2G007140 Rw2G016970 Rw2G016990 Rw2G017000 Rw3G018910 Rw3G018920 Rw3G018930 Rw5G024830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 470
AciI CCGC 3 cut(s) 28, 278, 542
AfaI GTAC 1 cut(s) 136
AfiI CCNNNNNNNGG 1 cut(s) 53
AgsI TTSAA 3 cut(s) 298, 412, 538
AjiI CACGTC 1 cut(s) 499
AluBI AGCT 6 cut(s) 161, 313, 349, 356, 389, 396
AluI AGCT 6 cut(s) 161, 313, 349, 356, 389, 396
Alw21I GWGCWC 1 cut(s) 18
Alw26I GTCTC 1 cut(s) 410
AlwNI CAGNNNCTG 1 cut(s) 260
AoxI GGCC 1 cut(s) 112
ApeKI GCWGC 4 cut(s) 59, 166, 221, 440
Asp700I GAANNNNTTC 1 cut(s) 483
AspLEI GCGC 2 cut(s) 59, 329
AspS9I GGNCC 1 cut(s) 544
AsuC2I CCSGG 1 cut(s) 79
AvaII GGWCC 1 cut(s) 544
BaeGI GKGCMC 1 cut(s) 233
Bbv12I GWGCWC 1 cut(s) 18
BbvI GCAGC 4 cut(s) 46, 178, 208, 452
BccI CCATC 3 cut(s) 47, 220, 233
BceAI ACGGC 1 cut(s) 474
BciVI GTATCC 1 cut(s) 254
BclI TGATCA 1 cut(s) 129
BcnI CCSGG 1 cut(s) 79
BcoDI GTCTC 1 cut(s) 410
BfoI RGCGCY 1 cut(s) 60
BfuI GTATCC 1 cut(s) 254
BisI GCNGC 4 cut(s) 60, 167, 222, 441
BlsI GCNGC 4 cut(s) 61, 168, 223, 442
Bme1390I CCNGG 1 cut(s) 79
Bme18I GGWCC 1 cut(s) 544
BmgBI CACGTC 1 cut(s) 499
BmgT120I GGNCC 1 cut(s) 544
BmiI GGNNCC 1 cut(s) 546
BmrFI CCNGG 1 cut(s) 79
BmsI GCATC 1 cut(s) 204
BpuEI CTTGAG 2 cut(s) 121, 365
BpuMI CCSGG 1 cut(s) 79
Bsc4I CCNNNNNNNGG 1 cut(s) 53
Bse1I ACTGG 1 cut(s) 125
Bse3DI GCAATG 1 cut(s) 465
BseGI GGATG 2 cut(s) 160, 244
BseLI CCNNNNNNNGG 1 cut(s) 53
BseMI GCAATG 1 cut(s) 465
BseMII CTCAG 1 cut(s) 278
BseNI ACTGG 1 cut(s) 125
BseSI GKGCMC 1 cut(s) 233
BseXI GCAGC 4 cut(s) 46, 178, 208, 452
BshFI GGCC 1 cut(s) 114
BsiHKAI GWGCWC 1 cut(s) 18
BsiSI CCGG 1 cut(s) 78
BslI CCNNNNNNNGG 1 cut(s) 53
BsmAI GTCTC 1 cut(s) 410
BsnI GGCC 1 cut(s) 114
Bsp1286I GDGCHC 2 cut(s) 18, 233
Bsp143I GATC 3 cut(s) 129, 366, 429
BspACI CCGC 3 cut(s) 28, 278, 542
BspANI GGCC 1 cut(s) 114
BspCNI CTCAG 1 cut(s) 279
BspLI GGNNCC 1 cut(s) 546
BsrDI GCAATG 1 cut(s) 465
BsrI ACTGG 1 cut(s) 125
BssMI GATC 3 cut(s) 129, 366, 429
Bst4CI ACNGT 1 cut(s) 256
BstC8I GCNNGC 2 cut(s) 32, 219
BstDEI CTNAG 1 cut(s) 287
BstF5I GGATG 2 cut(s) 160, 244
BstH2I RGCGCY 1 cut(s) 60
BstHHI GCGC 2 cut(s) 59, 329
BstKTI GATC 3 cut(s) 132, 369, 432
BstMAI GTCTC 1 cut(s) 410
BstMBI GATC 3 cut(s) 129, 366, 429
BstMWI GCNNNNNNNGC 2 cut(s) 346, 467
BstNSI RCATGY 1 cut(s) 34
BstSCI CCNGG 1 cut(s) 77
BstSLI GKGCMC 1 cut(s) 233
BstV1I GCAGC 4 cut(s) 46, 178, 208, 452
BsuI GTATCC 1 cut(s) 254
BsuRI GGCC 1 cut(s) 114
BtgZI GCGATG 1 cut(s) 239
BtrI CACGTC 1 cut(s) 499
BtsCI GGATG 2 cut(s) 160, 244
BtsIMutI CAGTG 1 cut(s) 132
Cac8I GCNNGC 2 cut(s) 32, 219
CaiI CAGNNNCTG 1 cut(s) 260
CfoI GCGC 2 cut(s) 59, 329
Cfr13I GGNCC 1 cut(s) 544
Csp6I GTAC 1 cut(s) 135
CviAII CATG 2 cut(s) 31, 475
CviQI GTAC 1 cut(s) 135
DdeI CTNAG 1 cut(s) 287
DpnI GATC 3 cut(s) 131, 368, 431
DpnII GATC 3 cut(s) 129, 366, 429
DrdI GACNNNNNNGTC 1 cut(s) 470
DseDI GACNNNNNNGTC 1 cut(s) 470
Eco47I GGWCC 1 cut(s) 544
FaeI CATG 2 cut(s) 34, 478
FaiI YATR 7 cut(s) 21, 32, 111, 164, 320, 455, 476
FatI CATG 2 cut(s) 30, 474
FauI CCCGC 1 cut(s) 285
FbaI TGATCA 1 cut(s) 129
Fnu4HI GCNGC 4 cut(s) 60, 167, 222, 441
FokI GGATG 2 cut(s) 167, 251
Fsp4HI GCNGC 4 cut(s) 60, 167, 222, 441
GlaI GCGC 2 cut(s) 58, 328
GluI GCNGC 4 cut(s) 60, 167, 222, 441
HaeII RGCGCY 1 cut(s) 60
HaeIII GGCC 1 cut(s) 114
HapII CCGG 1 cut(s) 78
HhaI GCGC 2 cut(s) 59, 329
Hin1II CATG 2 cut(s) 34, 478
Hin6I GCGC 2 cut(s) 57, 327
HinP1I GCGC 2 cut(s) 57, 327
HindIII AAGCTT 1 cut(s) 311
HinfI GANTC 2 cut(s) 182, 510
HpaII CCGG 1 cut(s) 78
Hpy166II GTNNAC 1 cut(s) 173
Hpy188I TCNGA 1 cut(s) 213
Hpy188III TCNNGA 2 cut(s) 50, 344
Hpy8I GTNNAC 1 cut(s) 173
HpyAV CCTTC 6 cut(s) 145, 292, 369, 406, 494, 532
HpyCH4III ACNGT 1 cut(s) 256
HpyCH4IV ACGT 1 cut(s) 498
HpyCH4V TGCA 4 cut(s) 166, 217, 440, 470
HpyF10VI GCNNNNNNNGC 2 cut(s) 346, 467
HpyF3I CTNAG 1 cut(s) 287
HpySE526I ACGT 1 cut(s) 498
Hsp92II CATG 2 cut(s) 34, 478
HspAI GCGC 2 cut(s) 57, 327
Ksp22I TGATCA 1 cut(s) 129
Kzo9I GATC 3 cut(s) 129, 366, 429
LpnPI CCDG 9 cut(s) 48, 83, 91, 138, 203, 345, 366, 375, 407
Lsp1109I GCAGC 4 cut(s) 46, 178, 208, 452
LweI GCATC 1 cut(s) 204
MaeII ACGT 1 cut(s) 498
MaeIII GTNAC 2 cut(s) 200, 262
MalI GATC 3 cut(s) 131, 368, 431
MboI GATC 3 cut(s) 129, 366, 429
MhlI GDGCHC 2 cut(s) 18, 233
MlyI GAGTC 1 cut(s) 176
MnlI CCTC 7 cut(s) 57, 75, 148, 257, 282, 351, 398
MroXI GAANNNNTTC 1 cut(s) 483
MspI CCGG 1 cut(s) 78
MspR9I CCNGG 1 cut(s) 79
MwoI GCNNNNNNNGC 2 cut(s) 346, 467
NciI CCSGG 1 cut(s) 79
NdeII GATC 3 cut(s) 129, 366, 429
NlaIII CATG 2 cut(s) 34, 478
NlaIV GGNNCC 1 cut(s) 546
NmuCI GTSAC 1 cut(s) 200
NspI RCATGY 1 cut(s) 34
PaeI GCATGC 1 cut(s) 34
PdmI GAANNNNTTC 1 cut(s) 483
PfeI GAWTC 1 cut(s) 510
PkrI GCNGC 4 cut(s) 61, 168, 223, 442
PleI GAGTC 1 cut(s) 176
PpsI GAGTC 1 cut(s) 176
PspN4I GGNNCC 1 cut(s) 546
PspPI GGNCC 1 cut(s) 544
PstNI CAGNNNCTG 1 cut(s) 260
RsaI GTAC 1 cut(s) 136
RsaNI GTAC 1 cut(s) 135
SatI GCNGC 4 cut(s) 60, 167, 222, 441
Sau3AI GATC 3 cut(s) 129, 366, 429
Sau96I GGNCC 1 cut(s) 544
SchI GAGTC 1 cut(s) 176
ScrFI CCNGG 1 cut(s) 79
SduI GDGCHC 2 cut(s) 18, 233
SfaNI GCATC 1 cut(s) 204
SinI GGWCC 1 cut(s) 544
SmlI CTYRAG 2 cut(s) 100, 344
SmoI CTYRAG 2 cut(s) 100, 344
SphI GCATGC 1 cut(s) 34
SsiI CCGC 3 cut(s) 28, 278, 542
StyD4I CCNGG 1 cut(s) 77
TaaI ACNGT 1 cut(s) 256
TaiI ACGT 1 cut(s) 501
TaqI TCGA 3 cut(s) 249, 432, 519
TfiI GAWTC 1 cut(s) 510
TscAI CASTG 1 cut(s) 132
TseFI GTSAC 1 cut(s) 200
TseI GCWGC 4 cut(s) 59, 166, 221, 440
Tsp45I GTSAC 1 cut(s) 200
TspDTI ATGAA 1 cut(s) 171
TspRI CASTG 1 cut(s) 132
VpaK11BI GGWCC 1 cut(s) 544
XceI RCATGY 1 cut(s) 34
XmnI GAANNNNTTC 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.