Rh2CG222100

Dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000167
Physical Location & Seq
Forward (+)
22339578 .. 22341744
2167 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG222100.1

Sequence Viewer

Length: 789 bp
ATGGTGGGATCTTGTCAATCTTGTGATAGTTGTGCCAACGCCCTTGAGAATTACTGCTCTAAATGGATACCCACATACGGTGCCATGTACCACGACGGAACCACTACTTACGGAGGTTACAGTGACATCATGGTGGCCGATGAGCACTTTGTAGTTCGTATTCCTGACAACCTGCCTATGGATGGTGCTGCGCCGCTTCTATGTGCCGGGATTACAACTTACAGTCCCTTGAGATATTTCGGACTTGACAAACCCGGAATGCATGTGGGCGTTGTTGGCCTTGGTGGTCTAGGTCACGTTGCTGTGAAGTTTGCGAAGGCTATGGGAGTCAAGGTTACGGTGATCAGTACGTCCACTAACAAGAAGGAGGAAGCTCTTGAGCACCTTGGTGCCGATTCATTTTTGGTCAGTCGTGACCAAGATCAAATGCAGGCCGCCATGGGTACAATGGACGGTATCATTGACACTGTCTCTGCAAACCACCCTCTCCTGCCATTCATTGGTTTGTTGAAGTCTCAGGGAAAGCTCATAATGGTCGGTGCACCAGACAAGCCTGCTGAGCTTCCAGTTTTTCCTTTGCTCATGGGAAGGAAGTTGGTCGCTGGTTCTTGCAACGGGAGCATGAAGGAGACACAACAGATGATTGATTTTGCGGCCAAACACAACATAACTGCCGATATTGAGGTCATCCCGATTGATTATTTGAACACTGCTATGGAACGCCTTGCAAAAGCTGACGTCAGATATCGATTTGTCATCGACATCGGCAACACATTGAAGTCATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
ADH_N ADH_zinc_N

Protein Analysis

262

Amino Acids

28.14

Weight (kDa)

5.77

Isoelectric Point (pI)

25.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2-Hacid_dh_C PF02826 78 - 128 9.5e-06 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
ADH_zinc_N PF00107 96 - 219 4.9e-22 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37980 AT4G37980 AT4G37990
fragaria_vesca FvH4_1g19210 FvH4_1g19220 FvH4_1g19240 FvH4_1g19240 FvH4_1g19261 FvH4_1g19262 FvH4_1g19263 FvH4_1g19263 FvH4_1g19265 FvH4_1g19281 FvH4_1g19281 FvH4_7g07240 FvH4_7g07240 FvH4_7g07240
malus_domestica MD01G1042500.v1.1 MD01G1042600.v1.1 MD01G1042800.v1.1 MD01G1042900.v1.1 MD05G1034100.v1.1 MD10G1035900.v1.1 MD10G1036000.v1.1 MD10G1155000.v1.1 MD10G1155100.v1.1 MD10G1155200.v1.1 MD10G1155400.v1.1 MD10G1155700.v1.1 MD10G1155800.v1.1 MD15G1308800.v1.1 MD15G1308900.v1.1
prunus_persica Prupe.6G205600_v2.0.a1 Prupe.6G205700_v2.0.a1 Prupe.6G205800_v2.0.a1 Prupe.6G205900_v2.0.a1 Prupe.6G206300_v2.0.a1 Prupe.6G206800_v2.0.a1 Prupe.6G207100_v2.0.a1 Prupe.6G207200_v2.0.a1 Prupe.6G207300_v2.0.a1 Prupe.6G207400_v2.0.a1 Prupe.6G207500_v2.0.a1 Prupe.6G207600_v2.0.a1 Prupe.6G207700_v2.0.a1 Prupe.6G207900_v2.0.a1
pyrus_communis pycom01g06970 pycom01g06980 pycom01g06990 pycom05g02460 pycom08g00750 pycom10g13410 pycom15g27310 pycom15g27320
rosa_chinensis RchiOBHm_Chr1g0314861 RchiOBHm_Chr1g0345441 RchiOBHm_Chr1g0345451 RchiOBHm_Chr1g0345621 RchiOBHm_Chr1g0345751 RchiOBHm_Chr1g0345861 RchiOBHm_Chr1g0345871 RchiOBHm_Chr1g0345891 RchiOBHm_Chr2g0094851 RchiOBHm_Chr2g0110471 RchiOBHm_Chr2g0110511 RchiOBHm_Chr2g0110531 RchiOBHm_Chr2g0110541 RchiOBHm_Chr2g0110571 RchiOBHm_Chr5g0039381 RchiOBHm_Chr5g0039391 RchiOBHm_Chr6g0270311 RchiOBHm_Chr6g0270331 RchiOBHm_Chr6g0270411 RchiOBHm_Chr6g0270431
rosa_laevigata RLG00000000515 RLG00000013793 RLG00000013797 RLG00000013799 RLG00000016525 RLG00000017808 RLG00000017811 RLG00000017813 RLG00000017816 RLG00000017819 RLG00000017822 RLG00000017824 RLG00000017825 RLG00000028835
rosa_multiflora Rmu_co8225458.1_g000001 Rmu_sc0000389.1_g000006 Rmu_sc0000389.1_g000014 Rmu_sc0000389.1_g000023 Rmu_sc0001292.1_g000012 Rmu_sc0001292.1_g000026 Rmu_sc0002145.1_g000003 Rmu_sc0002329.1_g000033 Rmu_sc0002833.1_g000044 Rmu_sc0004316.1_g000012 Rmu_sc0004439.1_g000003 Rmu_sc0006422.1_g000028 Rmu_sc0009479.1_g000012 Rmu_sc0010489.1_g000009 Rmu_sc0010489.1_g000010 Rmu_sc0017837.1_g000003 Rmu_sc0032320.1_g000001
rosa_roxburghii Rroxscaffold_1G00050770 Rroxscaffold_2G00133110 Rroxscaffold_2G00133140 Rroxscaffold_2G00133200 Rroxscaffold_2G00133270 Rroxscaffold_2G00133290 Rroxscaffold_2G00133300 Rroxscaffold_2G00133350 Rroxscaffold_4G00292490 Rroxscaffold_4G00309020 Rroxscaffold_4G00331740 Rroxscaffold_4G00331800 Rroxscaffold_6G00404470 Rroxscaffold_7G00197950 Rroxscaffold_7G00197990 Rroxscaffold_7G00198020
rosa_rugosa Rorug01G0002500 Rorug02G0047200 Rorug02G0047300 Rorug02G0047300 Rorug02G0047400 Rorug02G0168000 Rorug02G0168000 Rorug02G0168100 Rorug02G0168100 Rorug02G0168400.1 Rorug03G0157600 Rorug03G0157700 Rorug05G0112600 Rorug06G0054600 Rorug06G0054700
rosa_samantha Rh1AG013300 Rh1AG195600 Rh1AG195700 Rh1AG196000 Rh1BG004900 Rh1BG114300 Rh2AG132300 Rh2BG095500 Rh2BG229700 Rh2BG229800 Rh2CG097400 Rh2CG221500 Rh2CG221800 Rh2CG222100 Rh2CG222200 Rh2CG222500 Rh2CG222600 Rh2CG345000 Rh5BG269700 Rh6AG172900 Rh6AG173100 Rh6CG080500 Rh6DG075900 Rh6DG164700 Rh6DG164900 Rh6DG165200 Rh6DG165300
rosa_wichuraiana Rw0G015390 Rw1G000600 Rw1G016130 Rw1G016190 Rw2G007140 Rw2G016970 Rw2G016990 Rw2G017000 Rw3G018910 Rw3G018920 Rw3G018930 Rw5G024830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 741
Acc36I ACCTGC 1 cut(s) 180
AccB1I GGYRCC 2 cut(s) 80, 389
AccB7I CCANNNNNTGG 1 cut(s) 500
AciI CCGC 3 cut(s) 194, 435, 653
AclWI GGATC 1 cut(s) 16
AcoI YGGCCR 2 cut(s) 135, 654
AcyI GRCGYC 1 cut(s) 738
AfaI GTAC 3 cut(s) 89, 349, 445
AfiI CCNNNNNNNGG 4 cut(s) 77, 178, 182, 500
AgsI TTSAA 3 cut(s) 511, 706, 778
AleI CACNNNNGTG 1 cut(s) 387
AluBI AGCT 4 cut(s) 374, 526, 562, 734
AluI AGCT 4 cut(s) 374, 526, 562, 734
Alw21I GWGCWC 3 cut(s) 147, 384, 544
Alw26I GTCTC 3 cut(s) 475, 519, 623
Alw44I GTGCAC 1 cut(s) 540
AlwI GGATC 1 cut(s) 16
AoxI GGCC 4 cut(s) 135, 277, 432, 654
ApaLI GTGCAC 1 cut(s) 540
ApeKI GCWGC 1 cut(s) 188
AspLEI GCGC 1 cut(s) 193
AsuC2I CCSGG 2 cut(s) 208, 255
AsuHPI GGTGA 1 cut(s) 352
BaeGI GKGCMC 1 cut(s) 544
BanI GGYRCC 2 cut(s) 80, 389
Bbv12I GWGCWC 3 cut(s) 147, 384, 544
BbvI GCAGC 1 cut(s) 175
BccI CCATC 1 cut(s) 176
BciVI GTATCC 1 cut(s) 60
BclI TGATCA 1 cut(s) 342
BcnI CCSGG 2 cut(s) 208, 255
BcoDI GTCTC 3 cut(s) 475, 519, 623
BfaI CTAG 1 cut(s) 290
BfuAI ACCTGC 1 cut(s) 180
BfuI GTATCC 1 cut(s) 60
BisI GCNGC 4 cut(s) 189, 194, 435, 654
BlpI GCTNAGC 1 cut(s) 558
BlsI GCNGC 4 cut(s) 190, 195, 436, 655
Bme1390I CCNGG 2 cut(s) 208, 255
BmiI GGNNCC 3 cut(s) 82, 100, 391
BmrFI CCNGG 2 cut(s) 208, 255
Bpu1102I GCTNAGC 1 cut(s) 558
BpuEI CTTGAG 3 cut(s) 65, 250, 398
BpuMI CCSGG 2 cut(s) 208, 255
Bsa29I ATCGAT 1 cut(s) 748
BsaHI GRCGYC 1 cut(s) 738
BsaJI CCNNGG 3 cut(s) 280, 385, 438
BsaXI ACNNNNNCTCC 2 cut(s) 318, 348
Bsc4I CCNNNNNNNGG 4 cut(s) 77, 178, 182, 500
Bse1I ACTGG 1 cut(s) 566
BseCI ATCGAT 1 cut(s) 748
BseDI CCNNGG 3 cut(s) 280, 385, 438
BseGI GGATG 2 cut(s) 187, 687
BseLI CCNNNNNNNGG 4 cut(s) 77, 178, 182, 500
BseMII CTCAG 2 cut(s) 530, 549
BseNI ACTGG 1 cut(s) 566
BseSI GKGCMC 1 cut(s) 544
BseXI GCAGC 1 cut(s) 175
BshFI GGCC 4 cut(s) 137, 279, 434, 656
BshNI GGYRCC 2 cut(s) 80, 389
BshVI ATCGAT 1 cut(s) 748
BsiHKAI GWGCWC 3 cut(s) 147, 384, 544
BsiSI CCGG 2 cut(s) 207, 255
BslFI GGGAC 1 cut(s) 210
BslI CCNNNNNNNGG 4 cut(s) 77, 178, 182, 500
BsmAI GTCTC 3 cut(s) 475, 519, 623
BsmFI GGGAC 1 cut(s) 210
BsmI GAATGC 1 cut(s) 264
BsnI GGCC 4 cut(s) 137, 279, 434, 656
Bsp1286I GDGCHC 3 cut(s) 147, 384, 544
Bsp143I GATC 3 cut(s) 8, 342, 421
Bsp1720I GCTNAGC 1 cut(s) 558
Bsp19I CCATGG 1 cut(s) 438
BspACI CCGC 3 cut(s) 194, 435, 653
BspANI GGCC 4 cut(s) 137, 279, 434, 656
BspCNI CTCAG 2 cut(s) 529, 550
BspDI ATCGAT 1 cut(s) 748
BspLI GGNNCC 3 cut(s) 82, 100, 391
BspMI ACCTGC 1 cut(s) 180
BspPI GGATC 1 cut(s) 16
BspT107I GGYRCC 2 cut(s) 80, 389
BsrI ACTGG 1 cut(s) 566
BssECI CCNNGG 3 cut(s) 280, 385, 438
BssMI GATC 3 cut(s) 8, 342, 421
BssNI GRCGYC 1 cut(s) 738
BssT1I CCWWGG 3 cut(s) 280, 385, 438
Bst4CI ACNGT 6 cut(s) 80, 122, 224, 340, 455, 469
BstACI GRCGYC 1 cut(s) 738
BstC8I GCNNGC 2 cut(s) 432, 555
BstDEI CTNAG 2 cut(s) 516, 558
BstDSI CCRYGG 1 cut(s) 438
BstF5I GGATG 2 cut(s) 187, 687
BstHHI GCGC 1 cut(s) 193
BstKTI GATC 3 cut(s) 11, 345, 424
BstMAI GTCTC 3 cut(s) 475, 519, 623
BstMBI GATC 3 cut(s) 8, 342, 421
BstMWI GCNNNNNNNGC 3 cut(s) 276, 559, 618
BstNSI RCATGY 1 cut(s) 266
BstSCI CCNGG 2 cut(s) 206, 253
BstSLI GKGCMC 1 cut(s) 544
BstV1I GCAGC 1 cut(s) 175
BstX2I RGATCY 1 cut(s) 8
BstYI RGATCY 1 cut(s) 8
Bsu15I ATCGAT 1 cut(s) 748
BsuI GTATCC 1 cut(s) 60
BsuRI GGCC 4 cut(s) 137, 279, 434, 656
BsuTUI ATCGAT 1 cut(s) 748
BtgI CCRYGG 1 cut(s) 438
BtsCI GGATG 2 cut(s) 187, 687
BtsI GCAGTG 1 cut(s) 708
BtsIMutI CAGTG 3 cut(s) 127, 465, 708
BveI ACCTGC 1 cut(s) 180
Cac8I GCNNGC 2 cut(s) 432, 555
CfoI GCGC 1 cut(s) 193
ClaI ATCGAT 1 cut(s) 748
Csp6I GTAC 3 cut(s) 88, 348, 444
CviAII CATG 6 cut(s) 85, 130, 263, 439, 583, 622
CviQI GTAC 3 cut(s) 88, 348, 444
DdeI CTNAG 2 cut(s) 516, 558
DpnI GATC 3 cut(s) 10, 344, 423
DpnII GATC 3 cut(s) 8, 342, 421
EaeI YGGCCR 2 cut(s) 135, 654
Eco130I CCWWGG 3 cut(s) 280, 385, 438
Eco32I GATATC 1 cut(s) 746
EcoRV GATATC 1 cut(s) 746
EcoT14I CCWWGG 3 cut(s) 280, 385, 438
EcoT22I ATGCAT 1 cut(s) 264
ErhI CCWWGG 3 cut(s) 280, 385, 438
FaeI CATG 6 cut(s) 88, 133, 266, 442, 586, 625
FaqI GGGAC 1 cut(s) 210
FatI CATG 6 cut(s) 84, 129, 262, 438, 582, 621
FbaI TGATCA 1 cut(s) 342
Fnu4HI GCNGC 4 cut(s) 189, 194, 435, 654
FokI GGATG 2 cut(s) 194, 674
Fsp4HI GCNGC 4 cut(s) 189, 194, 435, 654
FspBI CTAG 1 cut(s) 290
GlaI GCGC 1 cut(s) 192
GluI GCNGC 4 cut(s) 189, 194, 435, 654
HaeIII GGCC 4 cut(s) 137, 279, 434, 656
HapII CCGG 2 cut(s) 207, 255
HhaI GCGC 1 cut(s) 193
Hin1I GRCGYC 1 cut(s) 738
Hin1II CATG 6 cut(s) 88, 133, 266, 442, 586, 625
Hin6I GCGC 1 cut(s) 191
HinP1I GCGC 1 cut(s) 191
HinfI GANTC 2 cut(s) 327, 395
HpaII CCGG 2 cut(s) 207, 255
HphI GGTGA 1 cut(s) 352
Hpy166II GTNNAC 2 cut(s) 354, 542
Hpy188I TCNGA 2 cut(s) 242, 743
Hpy188III TCNNGA 4 cut(s) 164, 377, 413, 691
Hpy8I GTNNAC 2 cut(s) 354, 542
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 4 cut(s) 310, 358, 582, 619
HpyCH4III ACNGT 6 cut(s) 80, 122, 224, 340, 455, 469
HpyCH4IV ACGT 3 cut(s) 297, 350, 738
HpyCH4V TGCA 6 cut(s) 262, 430, 476, 542, 612, 728
HpyF10VI GCNNNNNNNGC 3 cut(s) 276, 559, 618
HpyF3I CTNAG 2 cut(s) 516, 558
HpySE526I ACGT 3 cut(s) 297, 350, 738
Hsp92I GRCGYC 1 cut(s) 738
Hsp92II CATG 6 cut(s) 88, 133, 266, 442, 586, 625
HspAI GCGC 1 cut(s) 191
Ksp22I TGATCA 1 cut(s) 342
Kzo9I GATC 3 cut(s) 8, 342, 421
LmnI GCTCC 1 cut(s) 618
Lsp1109I GCAGC 1 cut(s) 175
MaeI CTAG 1 cut(s) 290
MaeII ACGT 3 cut(s) 297, 350, 738
MaeIII GTNAC 5 cut(s) 116, 122, 293, 334, 413
MalI GATC 3 cut(s) 10, 344, 423
MboI GATC 3 cut(s) 8, 342, 421
MflI RGATCY 1 cut(s) 8
MhlI GDGCHC 3 cut(s) 147, 384, 544
MluCI AATT 1 cut(s) 49
MlyI GAGTC 1 cut(s) 336
MnlI CCTC 4 cut(s) 107, 361, 495, 676
Mph1103I ATGCAT 1 cut(s) 264
MseI TTAA 1 cut(s) 787
MslI CAYNNNNRTG 3 cut(s) 131, 387, 713
MspI CCGG 2 cut(s) 207, 255
MspR9I CCNGG 2 cut(s) 208, 255
Mva1269I GAATGC 1 cut(s) 264
MwoI GCNNNNNNNGC 3 cut(s) 276, 559, 618
NciI CCSGG 2 cut(s) 208, 255
NcoI CCATGG 1 cut(s) 438
NdeII GATC 3 cut(s) 8, 342, 421
NlaIII CATG 6 cut(s) 88, 133, 266, 442, 586, 625
NlaIV GGNNCC 3 cut(s) 82, 100, 391
NmuCI GTSAC 3 cut(s) 122, 293, 413
NsiI ATGCAT 1 cut(s) 264
NspI RCATGY 1 cut(s) 266
OliI CACNNNNGTG 1 cut(s) 387
PctI GAATGC 1 cut(s) 264
PfeI GAWTC 1 cut(s) 395
PflFI GACNNNGTC 1 cut(s) 467
PflMI CCANNNNNTGG 1 cut(s) 500
PkrI GCNGC 4 cut(s) 190, 195, 436, 655
PleI GAGTC 1 cut(s) 335
PpsI GAGTC 1 cut(s) 335
PspN4I GGNNCC 3 cut(s) 82, 100, 391
PsuI RGATCY 1 cut(s) 8
PsyI GACNNNGTC 1 cut(s) 467
RsaI GTAC 3 cut(s) 89, 349, 445
RsaNI GTAC 3 cut(s) 88, 348, 444
RseI CAYNNNNRTG 3 cut(s) 131, 387, 713
SaqAI TTAA 1 cut(s) 787
SatI GCNGC 4 cut(s) 189, 194, 435, 654
Sau3AI GATC 3 cut(s) 8, 342, 421
SchI GAGTC 1 cut(s) 336
ScrFI CCNGG 2 cut(s) 208, 255
SduI GDGCHC 3 cut(s) 147, 384, 544
SmiMI CAYNNNNRTG 3 cut(s) 131, 387, 713
SmlI CTYRAG 3 cut(s) 44, 229, 377
SmoI CTYRAG 3 cut(s) 44, 229, 377
Sse9I AATT 1 cut(s) 49
SsiI CCGC 3 cut(s) 194, 435, 653
SspMI CTAG 1 cut(s) 290
StyD4I CCNGG 2 cut(s) 206, 253
StyI CCWWGG 3 cut(s) 280, 385, 438
TaaI ACNGT 6 cut(s) 80, 122, 224, 340, 455, 469
TaiI ACGT 3 cut(s) 300, 353, 741
TaqI TCGA 2 cut(s) 748, 759
TasI AATT 1 cut(s) 49
TauI GCSGC 3 cut(s) 196, 437, 656
TfiI GAWTC 1 cut(s) 395
Tru1I TTAA 1 cut(s) 787
Tru9I TTAA 1 cut(s) 787
TscAI CASTG 3 cut(s) 127, 472, 715
TseFI GTSAC 3 cut(s) 122, 293, 413
TseI GCWGC 1 cut(s) 188
Tsp45I GTSAC 3 cut(s) 122, 293, 413
TspDTI ATGAA 3 cut(s) 387, 487, 638
TspGWI ACGGA 2 cut(s) 111, 126
TspRI CASTG 3 cut(s) 127, 472, 715
Tth111I GACNNNGTC 1 cut(s) 467
Van91I CCANNNNNTGG 1 cut(s) 500
VneI GTGCAC 1 cut(s) 540
XceI RCATGY 1 cut(s) 266
XcmI CCANNNNNNNNNTGG 1 cut(s) 445
XspI CTAG 1 cut(s) 290
ZraI GACGTC 1 cut(s) 739
Zsp2I ATGCAT 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.