Rw3G018920

Alcohol dehydrogenase GroES-like domain

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Reverse (-)
21265034 .. 21266171
1138 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G018920.1

Sequence Viewer

Length: 390 bp
ATGGCATTATTGTCTCCAGAGCAAGAACACCACAGGAAAGCATTTGGATGGGCTGCAAGGGATTCATCTGGTGTTCTCTCTCCCTTCAAATTCTCAAGAAGGGAAACAGGACCGAACGACGTAAGATTCAAAGTGTTATACTATGGAGTATGCCATTCGGACATTCACATGATCAAAAATGATTGGGGAATGTCTACCTATCCTATAGTACTACCTGGGCATGAACTTGTTGGTGTAGTGACAGAAGTAGGGTGCAAAGTAAAGAAATTCCAAGTTGGAAACAAGGTCGGTGTTGGTTGCATGGTGGACTCTGACAGAACTTGTGAAAATTGTGTACCCGACCTAGAAAATTACTGTCCTCGAATGATACAAACTATGATGGAACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

129

Amino Acids

14.54

Weight (kDa)

6.94

Isoelectric Point (pI)

36.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 37 - 121 3e-18 Alcohol dehydrogenase GroES-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37980 AT4G37980 AT4G37990
fragaria_vesca FvH4_1g19210 FvH4_1g19220 FvH4_1g19240 FvH4_1g19240 FvH4_1g19261 FvH4_1g19262 FvH4_1g19263 FvH4_1g19263 FvH4_1g19265 FvH4_1g19281 FvH4_1g19281 FvH4_7g07240 FvH4_7g07240 FvH4_7g07240
malus_domestica MD01G1042500.v1.1 MD01G1042600.v1.1 MD01G1042800.v1.1 MD01G1042900.v1.1 MD05G1034100.v1.1 MD10G1035900.v1.1 MD10G1036000.v1.1 MD10G1155000.v1.1 MD10G1155100.v1.1 MD10G1155200.v1.1 MD10G1155400.v1.1 MD10G1155700.v1.1 MD10G1155800.v1.1 MD15G1308800.v1.1 MD15G1308900.v1.1
prunus_persica Prupe.6G205600_v2.0.a1 Prupe.6G205700_v2.0.a1 Prupe.6G205800_v2.0.a1 Prupe.6G205900_v2.0.a1 Prupe.6G206300_v2.0.a1 Prupe.6G206800_v2.0.a1 Prupe.6G207100_v2.0.a1 Prupe.6G207200_v2.0.a1 Prupe.6G207300_v2.0.a1 Prupe.6G207400_v2.0.a1 Prupe.6G207500_v2.0.a1 Prupe.6G207600_v2.0.a1 Prupe.6G207700_v2.0.a1 Prupe.6G207900_v2.0.a1
pyrus_communis pycom01g06970 pycom01g06980 pycom01g06990 pycom05g02460 pycom08g00750 pycom10g13410 pycom15g27310 pycom15g27320
rosa_chinensis RchiOBHm_Chr1g0314861 RchiOBHm_Chr1g0345441 RchiOBHm_Chr1g0345451 RchiOBHm_Chr1g0345621 RchiOBHm_Chr1g0345751 RchiOBHm_Chr1g0345861 RchiOBHm_Chr1g0345871 RchiOBHm_Chr1g0345891 RchiOBHm_Chr2g0094851 RchiOBHm_Chr2g0110471 RchiOBHm_Chr2g0110511 RchiOBHm_Chr2g0110531 RchiOBHm_Chr2g0110541 RchiOBHm_Chr2g0110571 RchiOBHm_Chr5g0039381 RchiOBHm_Chr5g0039391 RchiOBHm_Chr6g0270311 RchiOBHm_Chr6g0270331 RchiOBHm_Chr6g0270411 RchiOBHm_Chr6g0270431
rosa_laevigata RLG00000000515 RLG00000013793 RLG00000013797 RLG00000013799 RLG00000016525 RLG00000017808 RLG00000017811 RLG00000017813 RLG00000017816 RLG00000017819 RLG00000017822 RLG00000017824 RLG00000017825 RLG00000028835
rosa_multiflora Rmu_co8225458.1_g000001 Rmu_sc0000389.1_g000006 Rmu_sc0000389.1_g000014 Rmu_sc0000389.1_g000023 Rmu_sc0001292.1_g000012 Rmu_sc0001292.1_g000026 Rmu_sc0002145.1_g000003 Rmu_sc0002329.1_g000033 Rmu_sc0002833.1_g000044 Rmu_sc0004316.1_g000012 Rmu_sc0004439.1_g000003 Rmu_sc0006422.1_g000028 Rmu_sc0009479.1_g000012 Rmu_sc0010489.1_g000009 Rmu_sc0010489.1_g000010 Rmu_sc0017837.1_g000003 Rmu_sc0032320.1_g000001
rosa_roxburghii Rroxscaffold_1G00050770 Rroxscaffold_2G00133110 Rroxscaffold_2G00133140 Rroxscaffold_2G00133200 Rroxscaffold_2G00133270 Rroxscaffold_2G00133290 Rroxscaffold_2G00133300 Rroxscaffold_2G00133350 Rroxscaffold_4G00292490 Rroxscaffold_4G00309020 Rroxscaffold_4G00331740 Rroxscaffold_4G00331800 Rroxscaffold_6G00404470 Rroxscaffold_7G00197950 Rroxscaffold_7G00197990 Rroxscaffold_7G00198020
rosa_rugosa Rorug01G0002500 Rorug02G0047200 Rorug02G0047300 Rorug02G0047300 Rorug02G0047400 Rorug02G0168000 Rorug02G0168000 Rorug02G0168100 Rorug02G0168100 Rorug02G0168400.1 Rorug03G0157600 Rorug03G0157700 Rorug05G0112600 Rorug06G0054600 Rorug06G0054700
rosa_samantha Rh1AG013300 Rh1AG195600 Rh1AG195700 Rh1AG196000 Rh1BG004900 Rh1BG114300 Rh2AG132300 Rh2BG095500 Rh2BG229700 Rh2BG229800 Rh2CG097400 Rh2CG221500 Rh2CG221800 Rh2CG222100 Rh2CG222200 Rh2CG222500 Rh2CG222600 Rh2CG345000 Rh5BG269700 Rh6AG172900 Rh6AG173100 Rh6CG080500 Rh6DG075900 Rh6DG164700 Rh6DG164900 Rh6DG165200 Rh6DG165300
rosa_wichuraiana Rw0G015390 Rw1G000600 Rw1G016130 Rw1G016190 Rw2G007140 Rw2G016970 Rw2G016990 Rw2G017000 Rw3G018910 Rw3G018920 Rw3G018930 Rw5G024830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 194
AcsI RAATTY 2 cut(s) 89, 266
AfaI GTAC 2 cut(s) 210, 336
AgsI TTSAA 2 cut(s) 88, 130
AjnI CCWGG 1 cut(s) 214
Alw26I GTCTC 1 cut(s) 18
ApeKI GCWGC 1 cut(s) 53
ApoI RAATTY 2 cut(s) 89, 266
AspS9I GGNCC 1 cut(s) 110
AvaII GGWCC 1 cut(s) 110
BbvI GCAGC 1 cut(s) 40
BccI CCATC 2 cut(s) 42, 373
BciT130I CCWGG 1 cut(s) 216
BclI TGATCA 1 cut(s) 171
BcoDI GTCTC 1 cut(s) 18
BfaI CTAG 1 cut(s) 344
BfmI CTRYAG 1 cut(s) 204
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
BmcAI AGTACT 1 cut(s) 210
Bme1390I CCNGG 1 cut(s) 216
Bme18I GGWCC 1 cut(s) 110
BmgT120I GGNCC 1 cut(s) 110
BmiI GGNNCC 1 cut(s) 384
BmrFI CCNGG 1 cut(s) 216
BpuEI CTTGAG 1 cut(s) 79
BsaJI CCNNGG 1 cut(s) 215
BseBI CCWGG 1 cut(s) 216
BseDI CCNNGG 1 cut(s) 215
BseGI GGATG 1 cut(s) 53
BseXI GCAGC 1 cut(s) 40
BsmAI GTCTC 1 cut(s) 18
Bsp143I GATC 1 cut(s) 171
BspLI GGNNCC 1 cut(s) 384
BssECI CCNNGG 1 cut(s) 215
BssMI GATC 1 cut(s) 171
Bst2UI CCWGG 1 cut(s) 216
Bst4CI ACNGT 1 cut(s) 356
BstF5I GGATG 1 cut(s) 53
BstKTI GATC 1 cut(s) 174
BstMAI GTCTC 1 cut(s) 18
BstMBI GATC 1 cut(s) 171
BstNI CCWGG 1 cut(s) 216
BstSCI CCNGG 1 cut(s) 214
BstSFI CTRYAG 1 cut(s) 204
BstV1I GCAGC 1 cut(s) 40
BtsCI GGATG 1 cut(s) 53
Cfr13I GGNCC 1 cut(s) 110
Csp6I GTAC 2 cut(s) 209, 335
CviAII CATG 4 cut(s) 169, 221, 301, 387
CviJI RGCY 1 cut(s) 53
CviKI_1 RGCY 1 cut(s) 53
CviQI GTAC 2 cut(s) 209, 335
DpnI GATC 1 cut(s) 173
DpnII GATC 1 cut(s) 171
Eco47I GGWCC 1 cut(s) 110
EcoRII CCWGG 1 cut(s) 214
FaeI CATG 4 cut(s) 172, 224, 304, 390
FaiI YATR 9 cut(s) 139, 144, 151, 170, 206, 222, 302, 377, 388
FatI CATG 4 cut(s) 168, 220, 300, 386
FbaI TGATCA 1 cut(s) 171
FblI GTMKAC 1 cut(s) 194
Fnu4HI GCNGC 1 cut(s) 54
FokI GGATG 1 cut(s) 60
Fsp4HI GCNGC 1 cut(s) 54
FspBI CTAG 1 cut(s) 344
GluI GCNGC 1 cut(s) 54
Hin1II CATG 4 cut(s) 172, 224, 304, 390
HinfI GANTC 3 cut(s) 62, 126, 308
Hpy166II GTNNAC 3 cut(s) 195, 307, 335
Hpy188I TCNGA 2 cut(s) 160, 313
Hpy188III TCNNGA 2 cut(s) 17, 96
Hpy8I GTNNAC 3 cut(s) 195, 307, 335
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 2 cut(s) 93, 94
HpyCH4III ACNGT 1 cut(s) 356
HpyCH4IV ACGT 1 cut(s) 120
HpyCH4V TGCA 3 cut(s) 56, 255, 300
HpySE526I ACGT 1 cut(s) 120
Hsp92II CATG 4 cut(s) 172, 224, 304, 390
Ksp22I TGATCA 1 cut(s) 171
Kzo9I GATC 1 cut(s) 171
LpnPI CCDG 6 cut(s) 19, 30, 54, 93, 201, 228
Lsp1109I GCAGC 1 cut(s) 40
MaeI CTAG 1 cut(s) 344
MaeII ACGT 1 cut(s) 120
MaeIII GTNAC 1 cut(s) 238
MalI GATC 1 cut(s) 173
MboI GATC 1 cut(s) 171
MluCI AATT 4 cut(s) 89, 266, 328, 349
MlyI GAGTC 1 cut(s) 302
MmeI TCCRAC 1 cut(s) 256
MnlI CCTC 1 cut(s) 369
MslI CAYNNNNRTG 2 cut(s) 46, 167
MspR9I CCNGG 1 cut(s) 216
MvaI CCWGG 1 cut(s) 216
NdeII GATC 1 cut(s) 171
NlaIII CATG 4 cut(s) 172, 224, 304, 390
NlaIV GGNNCC 1 cut(s) 384
NmuCI GTSAC 1 cut(s) 238
PfeI GAWTC 2 cut(s) 62, 126
PkrI GCNGC 1 cut(s) 55
PleI GAGTC 1 cut(s) 302
PpsI GAGTC 1 cut(s) 302
Psp6I CCWGG 1 cut(s) 214
PspGI CCWGG 1 cut(s) 214
PspN4I GGNNCC 1 cut(s) 384
PspPI GGNCC 1 cut(s) 110
RsaI GTAC 2 cut(s) 210, 336
RsaNI GTAC 2 cut(s) 209, 335
RseI CAYNNNNRTG 2 cut(s) 46, 167
SatI GCNGC 1 cut(s) 54
Sau3AI GATC 1 cut(s) 171
Sau96I GGNCC 1 cut(s) 110
ScaI AGTACT 1 cut(s) 210
SchI GAGTC 1 cut(s) 302
ScrFI CCNGG 1 cut(s) 216
SetI ASST 5 cut(s) 123, 200, 217, 288, 345
SfcI CTRYAG 1 cut(s) 204
SinI GGWCC 1 cut(s) 110
SmiMI CAYNNNNRTG 2 cut(s) 46, 167
SmlI CTYRAG 1 cut(s) 94
SmoI CTYRAG 1 cut(s) 94
Sse9I AATT 4 cut(s) 89, 266, 328, 349
SspMI CTAG 1 cut(s) 344
StyD4I CCNGG 1 cut(s) 214
TaaI ACNGT 1 cut(s) 356
TaiI ACGT 1 cut(s) 123
TaqI TCGA 1 cut(s) 361
TaqII GACCGA 1 cut(s) 127
TasI AATT 4 cut(s) 89, 266, 328, 349
TatI WGTACW 1 cut(s) 208
TfiI GAWTC 2 cut(s) 62, 126
TseFI GTSAC 1 cut(s) 238
TseI GCWGC 1 cut(s) 53
Tsp45I GTSAC 1 cut(s) 238
TspDTI ATGAA 2 cut(s) 54, 237
VpaK11BI GGWCC 1 cut(s) 110
XapI RAATTY 2 cut(s) 89, 266
XmiI GTMKAC 1 cut(s) 194
XspI CTAG 1 cut(s) 344
ZrmI AGTACT 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.