Rh6DG164900

Alcohol dehydrogenase GroES-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000167
Physical Location & Seq
Reverse (-)
25293003 .. 25293920
918 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG164900.1

Sequence Viewer

Length: 564 bp
ATGAGATATTTCGGACTTGACAAACCCGGCATGCATGTGGGGGTGGTTGGCCTTGGCGGTTTAGGTCACGTGGCGGTGAAGTTTGCCAAGGCTTTGGGGGTTAAGGTTACACTGATCATTACCTCCCCTAATAAGAAAGATGAAGCTATTAAACATCTCGGTGTTGATTCTTTCTTGGTCAGTCGTGACCAAGATCAGATGCAGGCTACCATGGGAACATTGGATGGTATCATCGACACAGTTTCTGCAGCCCACCCTCTCCCACCTCTGATTAGTTTATTGAAGGTTAATGGAAAGCTTGTGATGGTTGGAGCGCCAGAGAAGCCTCTTGAGCTCCCAGTTTTTTCCTTGCTAATGGGAAGGAAGATTTTAGCCGGTAGTAATATCGGAGGTATCAAGGAGACACAAGAGATGATAGATTTGGCAGCCAAACACAACATAACGGCCGACGTCGAAGTTATCCCCATCGATTATTTGAACACTGCCATGGAGCGTCTTGCCAAAGGAGATGTTAGATACCGGTTTGTCATCGATATCGGAAACACATTAAAGTCGGCCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
ADH_N ADH_zinc_N

Protein Analysis

187

Amino Acids

20.02

Weight (kDa)

8.78

Isoelectric Point (pI)

17.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_zinc_N PF00107 20 - 143 8.5e-21 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 53 - 172 7.5e-07 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37980 AT4G37980 AT4G37990
fragaria_vesca FvH4_1g19210 FvH4_1g19220 FvH4_1g19240 FvH4_1g19240 FvH4_1g19261 FvH4_1g19262 FvH4_1g19263 FvH4_1g19263 FvH4_1g19265 FvH4_1g19281 FvH4_1g19281 FvH4_7g07240 FvH4_7g07240 FvH4_7g07240
malus_domestica MD01G1042500.v1.1 MD01G1042600.v1.1 MD01G1042800.v1.1 MD01G1042900.v1.1 MD05G1034100.v1.1 MD10G1035900.v1.1 MD10G1036000.v1.1 MD10G1155000.v1.1 MD10G1155100.v1.1 MD10G1155200.v1.1 MD10G1155400.v1.1 MD10G1155700.v1.1 MD10G1155800.v1.1 MD15G1308800.v1.1 MD15G1308900.v1.1
prunus_persica Prupe.6G205600_v2.0.a1 Prupe.6G205700_v2.0.a1 Prupe.6G205800_v2.0.a1 Prupe.6G205900_v2.0.a1 Prupe.6G206300_v2.0.a1 Prupe.6G206800_v2.0.a1 Prupe.6G207100_v2.0.a1 Prupe.6G207200_v2.0.a1 Prupe.6G207300_v2.0.a1 Prupe.6G207400_v2.0.a1 Prupe.6G207500_v2.0.a1 Prupe.6G207600_v2.0.a1 Prupe.6G207700_v2.0.a1 Prupe.6G207900_v2.0.a1
pyrus_communis pycom01g06970 pycom01g06980 pycom01g06990 pycom05g02460 pycom08g00750 pycom10g13410 pycom15g27310 pycom15g27320
rosa_chinensis RchiOBHm_Chr1g0314861 RchiOBHm_Chr1g0345441 RchiOBHm_Chr1g0345451 RchiOBHm_Chr1g0345621 RchiOBHm_Chr1g0345751 RchiOBHm_Chr1g0345861 RchiOBHm_Chr1g0345871 RchiOBHm_Chr1g0345891 RchiOBHm_Chr2g0094851 RchiOBHm_Chr2g0110471 RchiOBHm_Chr2g0110511 RchiOBHm_Chr2g0110531 RchiOBHm_Chr2g0110541 RchiOBHm_Chr2g0110571 RchiOBHm_Chr5g0039381 RchiOBHm_Chr5g0039391 RchiOBHm_Chr6g0270311 RchiOBHm_Chr6g0270331 RchiOBHm_Chr6g0270411 RchiOBHm_Chr6g0270431
rosa_laevigata RLG00000000515 RLG00000013793 RLG00000013797 RLG00000013799 RLG00000016525 RLG00000017808 RLG00000017811 RLG00000017813 RLG00000017816 RLG00000017819 RLG00000017822 RLG00000017824 RLG00000017825 RLG00000028835
rosa_multiflora Rmu_co8225458.1_g000001 Rmu_sc0000389.1_g000006 Rmu_sc0000389.1_g000014 Rmu_sc0000389.1_g000023 Rmu_sc0001292.1_g000012 Rmu_sc0001292.1_g000026 Rmu_sc0002145.1_g000003 Rmu_sc0002329.1_g000033 Rmu_sc0002833.1_g000044 Rmu_sc0004316.1_g000012 Rmu_sc0004439.1_g000003 Rmu_sc0006422.1_g000028 Rmu_sc0009479.1_g000012 Rmu_sc0010489.1_g000009 Rmu_sc0010489.1_g000010 Rmu_sc0017837.1_g000003 Rmu_sc0032320.1_g000001
rosa_roxburghii Rroxscaffold_1G00050770 Rroxscaffold_2G00133110 Rroxscaffold_2G00133140 Rroxscaffold_2G00133200 Rroxscaffold_2G00133270 Rroxscaffold_2G00133290 Rroxscaffold_2G00133300 Rroxscaffold_2G00133350 Rroxscaffold_4G00292490 Rroxscaffold_4G00309020 Rroxscaffold_4G00331740 Rroxscaffold_4G00331800 Rroxscaffold_6G00404470 Rroxscaffold_7G00197950 Rroxscaffold_7G00197990 Rroxscaffold_7G00198020
rosa_rugosa Rorug01G0002500 Rorug02G0047200 Rorug02G0047300 Rorug02G0047300 Rorug02G0047400 Rorug02G0168000 Rorug02G0168000 Rorug02G0168100 Rorug02G0168100 Rorug02G0168400.1 Rorug03G0157600 Rorug03G0157700 Rorug05G0112600 Rorug06G0054600 Rorug06G0054700
rosa_samantha Rh1AG013300 Rh1AG195600 Rh1AG195700 Rh1AG196000 Rh1BG004900 Rh1BG114300 Rh2AG132300 Rh2BG095500 Rh2BG229700 Rh2BG229800 Rh2CG097400 Rh2CG221500 Rh2CG221800 Rh2CG222100 Rh2CG222200 Rh2CG222500 Rh2CG222600 Rh2CG345000 Rh5BG269700 Rh6AG172900 Rh6AG173100 Rh6CG080500 Rh6DG075900 Rh6DG164700 Rh6DG164900 Rh6DG165200 Rh6DG165300
rosa_wichuraiana Rw0G015390 Rw1G000600 Rw1G016130 Rw1G016190 Rw2G007140 Rw2G016970 Rw2G016990 Rw2G017000 Rw3G018910 Rw3G018920 Rw3G018930 Rw5G024830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 453
AciI CCGC 2 cut(s) 57, 74
AcoI YGGCCR 2 cut(s) 444, 555
AcvI CACGTG 1 cut(s) 70
AcyI GRCGYC 1 cut(s) 450
AgeI ACCGGT 1 cut(s) 519
AgsI TTSAA 2 cut(s) 283, 478
AluBI AGCT 3 cut(s) 146, 298, 334
AluI AGCT 3 cut(s) 146, 298, 334
Alw21I GWGCWC 1 cut(s) 336
Alw26I GTCTC 1 cut(s) 395
AlwNI CAGNNNCTG 1 cut(s) 245
AoxI GGCC 3 cut(s) 49, 444, 555
ApeKI GCWGC 2 cut(s) 248, 425
AsiGI ACCGGT 1 cut(s) 519
AspLEI GCGC 1 cut(s) 316
AsuC2I CCSGG 1 cut(s) 27
AsuHPI GGTGA 1 cut(s) 88
BanII GRGCYC 1 cut(s) 336
BbrPI CACGTG 1 cut(s) 70
Bbv12I GWGCWC 1 cut(s) 336
BbvI GCAGC 2 cut(s) 260, 437
BccI CCATC 3 cut(s) 218, 298, 473
BceAI ACGGC 1 cut(s) 459
BclI TGATCA 1 cut(s) 114
BcnI CCSGG 1 cut(s) 27
BcoDI GTCTC 1 cut(s) 395
BfmI CTRYAG 1 cut(s) 246
BfoI RGCGCY 1 cut(s) 317
BisI GCNGC 2 cut(s) 249, 426
BlsI GCNGC 2 cut(s) 250, 427
Bme1390I CCNGG 1 cut(s) 27
BmrFI CCNGG 1 cut(s) 27
BmrI ACTGGG 1 cut(s) 332
BmsI GCATC 1 cut(s) 189
BmuI ACTGGG 1 cut(s) 332
BpuEI CTTGAG 1 cut(s) 350
BpuMI CCSGG 1 cut(s) 27
Bsa29I ATCGAT 2 cut(s) 468, 531
BsaAI YACGTR 1 cut(s) 70
BsaHI GRCGYC 1 cut(s) 450
BsaJI CCNNGG 4 cut(s) 52, 87, 210, 486
BsaWI WCCGGW 1 cut(s) 519
Bse118I RCCGGY 2 cut(s) 374, 519
Bse1I ACTGG 1 cut(s) 338
BseCI ATCGAT 2 cut(s) 468, 531
BseDI CCNNGG 4 cut(s) 52, 87, 210, 486
BseGI GGATG 1 cut(s) 229
BseNI ACTGG 1 cut(s) 338
BseX3I CGGCCG 1 cut(s) 444
BseXI GCAGC 2 cut(s) 260, 437
Bsh1285I CGRYCG 1 cut(s) 447
BshFI GGCC 3 cut(s) 51, 446, 557
BshTI ACCGGT 1 cut(s) 519
BshVI ATCGAT 2 cut(s) 468, 531
BsiEI CGRYCG 1 cut(s) 447
BsiHKAI GWGCWC 1 cut(s) 336
BsiSI CCGG 3 cut(s) 27, 375, 520
BsmAI GTCTC 1 cut(s) 395
BsnI GGCC 3 cut(s) 51, 446, 557
Bsp1286I GDGCHC 1 cut(s) 336
Bsp143I GATC 2 cut(s) 114, 193
Bsp19I CCATGG 2 cut(s) 210, 486
BspACI CCGC 2 cut(s) 57, 74
BspANI GGCC 3 cut(s) 51, 446, 557
BspDI ATCGAT 2 cut(s) 468, 531
BspMAI CTGCAG 1 cut(s) 250
BsrFI RCCGGY 2 cut(s) 374, 519
BsrI ACTGG 1 cut(s) 338
BssAI RCCGGY 2 cut(s) 374, 519
BssECI CCNNGG 4 cut(s) 52, 87, 210, 486
BssMI GATC 2 cut(s) 114, 193
BssNI GRCGYC 1 cut(s) 450
BssT1I CCWWGG 4 cut(s) 52, 87, 210, 486
Bst4CI ACNGT 1 cut(s) 241
BstACI GRCGYC 1 cut(s) 450
BstBAI YACGTR 1 cut(s) 70
BstC8I GCNNGC 2 cut(s) 32, 204
BstDSI CCRYGG 2 cut(s) 210, 486
BstF5I GGATG 1 cut(s) 229
BstH2I RGCGCY 1 cut(s) 317
BstHHI GCGC 1 cut(s) 316
BstKTI GATC 2 cut(s) 117, 196
BstMAI GTCTC 1 cut(s) 395
BstMBI GATC 2 cut(s) 114, 193
BstMCI CGRYCG 1 cut(s) 447
BstMWI GCNNNNNNNGC 2 cut(s) 322, 331
BstNSI RCATGY 2 cut(s) 34, 38
BstSCI CCNGG 1 cut(s) 25
BstSFI CTRYAG 1 cut(s) 246
BstV1I GCAGC 2 cut(s) 260, 437
BstXI CCANNNNNNTGG 1 cut(s) 94
BstZI CGGCCG 1 cut(s) 444
Bsu15I ATCGAT 2 cut(s) 468, 531
BsuRI GGCC 3 cut(s) 51, 446, 557
BsuTUI ATCGAT 2 cut(s) 468, 531
BtgI CCRYGG 2 cut(s) 210, 486
BtsCI GGATG 1 cut(s) 229
BtsI GCAGTG 1 cut(s) 480
BtsIMutI CAGTG 2 cut(s) 110, 480
Cac8I GCNNGC 2 cut(s) 32, 204
CaiI CAGNNNCTG 1 cut(s) 245
CfoI GCGC 1 cut(s) 316
Cfr10I RCCGGY 2 cut(s) 374, 519
ClaI ATCGAT 2 cut(s) 468, 531
CseI GACGC 1 cut(s) 482
CspAI ACCGGT 1 cut(s) 519
CviAII CATG 4 cut(s) 31, 35, 211, 487
DpnI GATC 2 cut(s) 116, 195
DpnII GATC 2 cut(s) 114, 193
EaeI YGGCCR 2 cut(s) 444, 555
EagI CGGCCG 1 cut(s) 444
Ecl136II GAGCTC 1 cut(s) 334
EclXI CGGCCG 1 cut(s) 444
Eco130I CCWWGG 4 cut(s) 52, 87, 210, 486
Eco24I GRGCYC 1 cut(s) 336
Eco32I GATATC 1 cut(s) 535
Eco52I CGGCCG 1 cut(s) 444
Eco53kI GAGCTC 1 cut(s) 334
Eco72I CACGTG 1 cut(s) 70
EcoICRI GAGCTC 1 cut(s) 334
EcoRV GATATC 1 cut(s) 535
EcoT14I CCWWGG 4 cut(s) 52, 87, 210, 486
EcoT22I ATGCAT 1 cut(s) 36
EcoT38I GRGCYC 1 cut(s) 336
ErhI CCWWGG 4 cut(s) 52, 87, 210, 486
FaeI CATG 4 cut(s) 34, 38, 214, 490
FaiI YATR 5 cut(s) 32, 36, 212, 440, 488
FatI CATG 4 cut(s) 30, 34, 210, 486
FbaI TGATCA 1 cut(s) 114
Fnu4HI GCNGC 2 cut(s) 249, 426
FokI GGATG 1 cut(s) 236
FriOI GRGCYC 1 cut(s) 336
Fsp4HI GCNGC 2 cut(s) 249, 426
GlaI GCGC 1 cut(s) 315
GluI GCNGC 2 cut(s) 249, 426
HaeII RGCGCY 1 cut(s) 317
HaeIII GGCC 3 cut(s) 51, 446, 557
HapII CCGG 3 cut(s) 27, 375, 520
HgaI GACGC 1 cut(s) 482
HhaI GCGC 1 cut(s) 316
Hin1I GRCGYC 1 cut(s) 450
Hin1II CATG 4 cut(s) 34, 38, 214, 490
Hin6I GCGC 1 cut(s) 314
HinP1I GCGC 1 cut(s) 314
HindIII AAGCTT 1 cut(s) 296
HinfI GANTC 1 cut(s) 167
HpaII CCGG 3 cut(s) 27, 375, 520
HphI GGTGA 1 cut(s) 88
Hpy188I TCNGA 5 cut(s) 14, 198, 270, 389, 539
Hpy188III TCNNGA 2 cut(s) 185, 329
Hpy99I CGWCG 2 cut(s) 452, 455
HpyAV CCTTC 2 cut(s) 277, 354
HpyCH4III ACNGT 1 cut(s) 241
HpyCH4IV ACGT 2 cut(s) 69, 450
HpyCH4V TGCA 3 cut(s) 34, 202, 248
HpyF10VI GCNNNNNNNGC 2 cut(s) 322, 331
HpySE526I ACGT 2 cut(s) 69, 450
Hsp92I GRCGYC 1 cut(s) 450
Hsp92II CATG 4 cut(s) 34, 38, 214, 490
HspAI GCGC 1 cut(s) 314
Ksp22I TGATCA 1 cut(s) 114
Kzo9I GATC 2 cut(s) 114, 193
LmnI GCTCC 3 cut(s) 311, 339, 490
LpnPI CCDG 6 cut(s) 40, 188, 330, 351, 388, 533
Lsp1109I GCAGC 2 cut(s) 260, 437
LweI GCATC 1 cut(s) 189
MaeII ACGT 2 cut(s) 69, 450
MaeIII GTNAC 3 cut(s) 65, 106, 185
MalI GATC 2 cut(s) 116, 195
MboI GATC 2 cut(s) 114, 193
MboII GAAGA 1 cut(s) 376
MhlI GDGCHC 1 cut(s) 336
MmeI TCCRAC 1 cut(s) 289
MnlI CCTC 5 cut(s) 133, 267, 276, 336, 383
Mph1103I ATGCAT 1 cut(s) 36
MseI TTAA 5 cut(s) 102, 150, 288, 548, 562
MslI CAYNNNNRTG 3 cut(s) 35, 159, 485
MspI CCGG 3 cut(s) 27, 375, 520
MspR9I CCNGG 1 cut(s) 27
MwoI GCNNNNNNNGC 2 cut(s) 322, 331
NciI CCSGG 1 cut(s) 27
NcoI CCATGG 2 cut(s) 210, 486
NdeII GATC 2 cut(s) 114, 193
NlaIII CATG 4 cut(s) 34, 38, 214, 490
NmuCI GTSAC 2 cut(s) 65, 185
NsiI ATGCAT 1 cut(s) 36
NspI RCATGY 2 cut(s) 34, 38
PaeI GCATGC 1 cut(s) 34
PfeI GAWTC 1 cut(s) 167
PinAI ACCGGT 1 cut(s) 519
PkrI GCNGC 2 cut(s) 250, 427
PmaCI CACGTG 1 cut(s) 70
PmlI CACGTG 1 cut(s) 70
Ppu21I YACGTR 1 cut(s) 70
Psp124BI GAGCTC 1 cut(s) 336
PspCI CACGTG 1 cut(s) 70
PstI CTGCAG 1 cut(s) 250
PstNI CAGNNNCTG 1 cut(s) 245
RseI CAYNNNNRTG 3 cut(s) 35, 159, 485
SacI GAGCTC 1 cut(s) 336
SaqAI TTAA 5 cut(s) 102, 150, 288, 548, 562
SatI GCNGC 2 cut(s) 249, 426
Sau3AI GATC 2 cut(s) 114, 193
ScrFI CCNGG 1 cut(s) 27
SduI GDGCHC 1 cut(s) 336
SfaNI GCATC 1 cut(s) 189
SfcI CTRYAG 1 cut(s) 246
SmiMI CAYNNNNRTG 3 cut(s) 35, 159, 485
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
SphI GCATGC 1 cut(s) 34
SsiI CCGC 2 cut(s) 57, 74
SstI GAGCTC 1 cut(s) 336
StyD4I CCNGG 1 cut(s) 25
StyI CCWWGG 4 cut(s) 52, 87, 210, 486
TaaI ACNGT 1 cut(s) 241
TaiI ACGT 2 cut(s) 72, 453
TaqI TCGA 4 cut(s) 234, 453, 468, 531
TfiI GAWTC 1 cut(s) 167
Tru1I TTAA 5 cut(s) 102, 150, 288, 548, 562
Tru9I TTAA 5 cut(s) 102, 150, 288, 548, 562
TscAI CASTG 2 cut(s) 117, 487
TseFI GTSAC 2 cut(s) 65, 185
TseI GCWGC 2 cut(s) 248, 425
Tsp45I GTSAC 2 cut(s) 65, 185
TspDTI ATGAA 1 cut(s) 156
TspRI CASTG 2 cut(s) 117, 487
XceI RCATGY 2 cut(s) 34, 38
XcmI CCANNNNNNNNNTGG 1 cut(s) 217
ZraI GACGTC 1 cut(s) 451
Zsp2I ATGCAT 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.