FvH4_1g19262

Alcohol dehydrogenase GroES-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000167
Physical Location & Seq
Forward (+)
11488167 .. 11489620
1454 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g19262.t1

Sequence Viewer

Length: 663 bp
ATGGGATCGTCTCCGGAGATGCAACACCCCAGGAAAGCTTTTGGATGGGCAGCAAGAGATACATCTGGTGTTCTATCTCCCTTTAAGTTCTCAAGAAGGGAAACAGGAGCGACGGACGTAAGATTCAAAGTGTTGTACTGTGGAGTGTGCCATTCCGACATTGCCGCGGCCAAAAATGAATTGGGGACTTCTGTCTATCCTATAGTACCTGGGCATGAACTTGTTGGTGTTGTGACAGAAGTAGGGTGCAGAGTAAAGAAATTCAAAGTCGGAGACAAGGTCGGTGTTGGTTACATGGTGGATTCTGATCGAACTTGTGATAATTGTATCCACCACCTTGAAAATTACTGTCCCAATCTGATACAAACCTACAGTTCTAAGTACTACGACGGAACCATGACATACGGAGGTTACTCGAACAACATGGTGACTGATGAGCACTTCGTTGTTCGAATCCCCGACAACTTACCTCTTGATTGCGCTGCTCTGCTTCTATGTGCCGGGATTACAACATACAGCCCCATGAGATATTATGGACTTGACAAACCCGGTATGCATCTTGGTGTGAATGGCCTAGGCGGTTTAGGTCATGTGGCCGTTAAATTTGCCAAGGCTTTGGGGCTCAAGGTTACTGTGATTAGTACCTTGTTGGAACTTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
ADH_N ADH_zinc_N

Protein Analysis

221

Amino Acids

23.93

Weight (kDa)

8.08

Isoelectric Point (pI)

20.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 37 - 154 1.9e-22 Alcohol dehydrogenase GroES-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37980 AT4G37980 AT4G37990
fragaria_vesca FvH4_1g19210 FvH4_1g19220 FvH4_1g19240 FvH4_1g19240 FvH4_1g19261 FvH4_1g19262 FvH4_1g19263 FvH4_1g19263 FvH4_1g19265 FvH4_1g19281 FvH4_1g19281 FvH4_7g07240 FvH4_7g07240 FvH4_7g07240
malus_domestica MD01G1042500.v1.1 MD01G1042600.v1.1 MD01G1042800.v1.1 MD01G1042900.v1.1 MD05G1034100.v1.1 MD10G1035900.v1.1 MD10G1036000.v1.1 MD10G1155000.v1.1 MD10G1155100.v1.1 MD10G1155200.v1.1 MD10G1155400.v1.1 MD10G1155700.v1.1 MD10G1155800.v1.1 MD15G1308800.v1.1 MD15G1308900.v1.1
prunus_persica Prupe.6G205600_v2.0.a1 Prupe.6G205700_v2.0.a1 Prupe.6G205800_v2.0.a1 Prupe.6G205900_v2.0.a1 Prupe.6G206300_v2.0.a1 Prupe.6G206800_v2.0.a1 Prupe.6G207100_v2.0.a1 Prupe.6G207200_v2.0.a1 Prupe.6G207300_v2.0.a1 Prupe.6G207400_v2.0.a1 Prupe.6G207500_v2.0.a1 Prupe.6G207600_v2.0.a1 Prupe.6G207700_v2.0.a1 Prupe.6G207900_v2.0.a1
pyrus_communis pycom01g06970 pycom01g06980 pycom01g06990 pycom05g02460 pycom08g00750 pycom10g13410 pycom15g27310 pycom15g27320
rosa_chinensis RchiOBHm_Chr1g0314861 RchiOBHm_Chr1g0345441 RchiOBHm_Chr1g0345451 RchiOBHm_Chr1g0345621 RchiOBHm_Chr1g0345751 RchiOBHm_Chr1g0345861 RchiOBHm_Chr1g0345871 RchiOBHm_Chr1g0345891 RchiOBHm_Chr2g0094851 RchiOBHm_Chr2g0110471 RchiOBHm_Chr2g0110511 RchiOBHm_Chr2g0110531 RchiOBHm_Chr2g0110541 RchiOBHm_Chr2g0110571 RchiOBHm_Chr5g0039381 RchiOBHm_Chr5g0039391 RchiOBHm_Chr6g0270311 RchiOBHm_Chr6g0270331 RchiOBHm_Chr6g0270411 RchiOBHm_Chr6g0270431
rosa_laevigata RLG00000000515 RLG00000013793 RLG00000013797 RLG00000013799 RLG00000016525 RLG00000017808 RLG00000017811 RLG00000017813 RLG00000017816 RLG00000017819 RLG00000017822 RLG00000017824 RLG00000017825 RLG00000028835
rosa_multiflora Rmu_co8225458.1_g000001 Rmu_sc0000389.1_g000006 Rmu_sc0000389.1_g000014 Rmu_sc0000389.1_g000023 Rmu_sc0001292.1_g000012 Rmu_sc0001292.1_g000026 Rmu_sc0002145.1_g000003 Rmu_sc0002329.1_g000033 Rmu_sc0002833.1_g000044 Rmu_sc0004316.1_g000012 Rmu_sc0004439.1_g000003 Rmu_sc0006422.1_g000028 Rmu_sc0009479.1_g000012 Rmu_sc0010489.1_g000009 Rmu_sc0010489.1_g000010 Rmu_sc0017837.1_g000003 Rmu_sc0032320.1_g000001
rosa_roxburghii Rroxscaffold_1G00050770 Rroxscaffold_2G00133110 Rroxscaffold_2G00133140 Rroxscaffold_2G00133200 Rroxscaffold_2G00133270 Rroxscaffold_2G00133290 Rroxscaffold_2G00133300 Rroxscaffold_2G00133350 Rroxscaffold_4G00292490 Rroxscaffold_4G00309020 Rroxscaffold_4G00331740 Rroxscaffold_4G00331800 Rroxscaffold_6G00404470 Rroxscaffold_7G00197950 Rroxscaffold_7G00197990 Rroxscaffold_7G00198020
rosa_rugosa Rorug01G0002500 Rorug02G0047200 Rorug02G0047300 Rorug02G0047300 Rorug02G0047400 Rorug02G0168000 Rorug02G0168000 Rorug02G0168100 Rorug02G0168100 Rorug02G0168400.1 Rorug03G0157600 Rorug03G0157700 Rorug05G0112600 Rorug06G0054600 Rorug06G0054700
rosa_samantha Rh1AG013300 Rh1AG195600 Rh1AG195700 Rh1AG196000 Rh1BG004900 Rh1BG114300 Rh2AG132300 Rh2BG095500 Rh2BG229700 Rh2BG229800 Rh2CG097400 Rh2CG221500 Rh2CG221800 Rh2CG222100 Rh2CG222200 Rh2CG222500 Rh2CG222600 Rh2CG345000 Rh5BG269700 Rh6AG172900 Rh6AG173100 Rh6CG080500 Rh6DG075900 Rh6DG164700 Rh6DG164900 Rh6DG165200 Rh6DG165300
rosa_wichuraiana Rw0G015390 Rw1G000600 Rw1G016130 Rw1G016190 Rw2G007140 Rw2G016970 Rw2G016990 Rw2G017000 Rw3G018910 Rw3G018920 Rw3G018930 Rw5G024830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 167
AccIII TCCGGA 1 cut(s) 13
AciI CCGC 3 cut(s) 165, 167, 579
AclWI GGATC 1 cut(s) 13
AcoI YGGCCR 2 cut(s) 168, 594
AcsI RAATTY 2 cut(s) 260, 602
AfaI GTAC 4 cut(s) 137, 207, 383, 643
AgsI TTSAA 3 cut(s) 127, 265, 341
AjnI CCWGG 2 cut(s) 29, 208
AluBI AGCT 1 cut(s) 38
AluI AGCT 1 cut(s) 38
Alw21I GWGCWC 1 cut(s) 441
Alw26I GTCTC 2 cut(s) 15, 267
AlwI GGATC 1 cut(s) 13
Aor13HI TCCGGA 1 cut(s) 13
AoxI GGCC 3 cut(s) 168, 571, 594
ApeKI GCWGC 2 cut(s) 50, 482
ApoI RAATTY 2 cut(s) 260, 602
AspA2I CCTAGG 1 cut(s) 574
AspLEI GCGC 1 cut(s) 482
AsuC2I CCSGG 2 cut(s) 502, 549
AsuHPI GGTGA 1 cut(s) 439
AsuII TTCGAA 1 cut(s) 451
AvrII CCTAGG 1 cut(s) 574
BanII GRGCYC 1 cut(s) 624
Bbv12I GWGCWC 1 cut(s) 441
BbvI GCAGC 2 cut(s) 62, 469
BccI CCATC 1 cut(s) 39
BceAI ACGGC 1 cut(s) 581
BciT130I CCWGG 2 cut(s) 31, 210
BciVI GTATCC 1 cut(s) 338
BcnI CCSGG 2 cut(s) 502, 549
BcoDI GTCTC 2 cut(s) 15, 267
BfaI CTAG 1 cut(s) 575
BfmI CTRYAG 2 cut(s) 201, 370
BfuI GTATCC 1 cut(s) 338
BisI GCNGC 4 cut(s) 51, 165, 168, 483
BlnI CCTAGG 1 cut(s) 574
BlsI GCNGC 4 cut(s) 52, 166, 169, 484
BmcAI AGTACT 1 cut(s) 383
Bme1390I CCNGG 4 cut(s) 31, 210, 502, 549
BmiI GGNNCC 1 cut(s) 394
BmrFI CCNGG 4 cut(s) 31, 210, 502, 549
BmsI GCATC 2 cut(s) 9, 565
BoxI GACNNNNGTC 1 cut(s) 191
Bpu14I TTCGAA 1 cut(s) 451
BpuEI CTTGAG 2 cut(s) 76, 608
BpuMI CCSGG 2 cut(s) 502, 549
BsaBI GATNNNNATC 1 cut(s) 306
BsaJI CCNNGG 5 cut(s) 29, 165, 209, 574, 609
BsaWI WCCGGW 1 cut(s) 13
BsaXI ACNNNNNCTCC 2 cut(s) 264, 294
Bse3DI GCAATG 1 cut(s) 159
Bse8I GATNNNNATC 1 cut(s) 306
BseAI TCCGGA 1 cut(s) 13
BseBI CCWGG 2 cut(s) 31, 210
BseDI CCNNGG 5 cut(s) 29, 165, 209, 574, 609
BseGI GGATG 1 cut(s) 50
BseJI GATNNNNATC 1 cut(s) 306
BseMI GCAATG 1 cut(s) 159
BseXI GCAGC 2 cut(s) 62, 469
BsgI GTGCAG 1 cut(s) 268
Bsh1236I CGCG 1 cut(s) 167
BshFI GGCC 3 cut(s) 170, 573, 596
BsiHKAI GWGCWC 1 cut(s) 441
BsiSI CCGG 3 cut(s) 14, 501, 549
BslFI GGGAC 2 cut(s) 199, 336
BsmAI GTCTC 2 cut(s) 15, 267
BsmBI CGTCTC 1 cut(s) 15
BsmFI GGGAC 2 cut(s) 199, 336
BsnI GGCC 3 cut(s) 170, 573, 596
Bsp119I TTCGAA 1 cut(s) 451
Bsp1286I GDGCHC 2 cut(s) 441, 624
Bsp13I TCCGGA 1 cut(s) 13
Bsp143I GATC 2 cut(s) 5, 307
BspACI CCGC 3 cut(s) 165, 167, 579
BspANI GGCC 3 cut(s) 170, 573, 596
BspEI TCCGGA 1 cut(s) 13
BspFNI CGCG 1 cut(s) 167
BspLI GGNNCC 1 cut(s) 394
BspPI GGATC 1 cut(s) 13
BspT104I TTCGAA 1 cut(s) 451
BsrDI GCAATG 1 cut(s) 159
BssECI CCNNGG 5 cut(s) 29, 165, 209, 574, 609
BssMI GATC 2 cut(s) 5, 307
BssT1I CCWWGG 2 cut(s) 574, 609
Bst2UI CCWGG 2 cut(s) 31, 210
Bst4CI ACNGT 4 cut(s) 140, 350, 374, 634
BstBI TTCGAA 1 cut(s) 451
BstDEI CTNAG 1 cut(s) 378
BstDSI CCRYGG 1 cut(s) 165
BstF5I GGATG 1 cut(s) 50
BstFNI CGCG 1 cut(s) 167
BstHHI GCGC 1 cut(s) 482
BstKTI GATC 2 cut(s) 8, 310
BstMAI GTCTC 2 cut(s) 15, 267
BstMBI GATC 2 cut(s) 5, 307
BstNI CCWGG 2 cut(s) 31, 210
BstPAI GACNNNNGTC 1 cut(s) 191
BstSCI CCNGG 4 cut(s) 29, 208, 500, 547
BstSFI CTRYAG 2 cut(s) 201, 370
BstUI CGCG 1 cut(s) 167
BstV1I GCAGC 2 cut(s) 62, 469
BstXI CCANNNNNNTGG 1 cut(s) 616
BsuI GTATCC 1 cut(s) 338
BsuRI GGCC 3 cut(s) 170, 573, 596
BtgI CCRYGG 1 cut(s) 165
BtsCI GGATG 1 cut(s) 50
CfoI GCGC 1 cut(s) 482
Cfr42I CCGCGG 1 cut(s) 168
Csp6I GTAC 4 cut(s) 136, 206, 382, 642
CviAII CATG 6 cut(s) 215, 295, 397, 424, 523, 590
CviJI RGCY 7 cut(s) 38, 170, 519, 573, 596, 614, 622
CviKI_1 RGCY 7 cut(s) 38, 170, 519, 573, 596, 614, 622
CviQI GTAC 4 cut(s) 136, 206, 382, 642
DdeI CTNAG 1 cut(s) 378
DpnI GATC 2 cut(s) 7, 309
DpnII GATC 2 cut(s) 5, 307
EaeI YGGCCR 2 cut(s) 168, 594
Eco130I CCWWGG 2 cut(s) 574, 609
Eco24I GRGCYC 1 cut(s) 624
EcoRII CCWGG 2 cut(s) 29, 208
EcoT14I CCWWGG 2 cut(s) 574, 609
EcoT22I ATGCAT 1 cut(s) 558
EcoT38I GRGCYC 1 cut(s) 624
ErhI CCWWGG 2 cut(s) 574, 609
Esp3I CGTCTC 1 cut(s) 15
FaeI CATG 6 cut(s) 218, 298, 400, 427, 526, 593
FaqI GGGAC 2 cut(s) 199, 336
FatI CATG 6 cut(s) 214, 294, 396, 423, 522, 589
Fnu4HI GCNGC 4 cut(s) 51, 165, 168, 483
FokI GGATG 1 cut(s) 57
FriOI GRGCYC 1 cut(s) 624
Fsp4HI GCNGC 4 cut(s) 51, 165, 168, 483
FspBI CTAG 1 cut(s) 575
GlaI GCGC 1 cut(s) 481
GluI GCNGC 4 cut(s) 51, 165, 168, 483
HaeIII GGCC 3 cut(s) 170, 573, 596
HapII CCGG 3 cut(s) 14, 501, 549
HhaI GCGC 1 cut(s) 482
Hin1II CATG 6 cut(s) 218, 298, 400, 427, 526, 593
Hin6I GCGC 1 cut(s) 480
HinP1I GCGC 1 cut(s) 480
HindIII AAGCTT 1 cut(s) 36
HinfI GANTC 3 cut(s) 123, 302, 453
HpaII CCGG 3 cut(s) 14, 501, 549
HphI GGTGA 1 cut(s) 439
Hpy188I TCNGA 4 cut(s) 157, 272, 307, 360
Hpy188III TCNNGA 3 cut(s) 14, 93, 473
Hpy99I CGWCG 2 cut(s) 115, 392
HpyAV CCTTC 1 cut(s) 90
HpyCH4III ACNGT 4 cut(s) 140, 350, 374, 634
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 3 cut(s) 22, 249, 556
HpyF3I CTNAG 1 cut(s) 378
HpySE526I ACGT 1 cut(s) 117
Hsp92II CATG 6 cut(s) 218, 298, 400, 427, 526, 593
HspAI GCGC 1 cut(s) 480
Kpn2I TCCGGA 1 cut(s) 13
KspI CCGCGG 1 cut(s) 168
Kzo9I GATC 2 cut(s) 5, 307
LmnI GCTCC 1 cut(s) 107
LpnPI CCDG 9 cut(s) 16, 27, 43, 51, 90, 195, 222, 514, 562
Lsp1109I GCAGC 2 cut(s) 62, 469
LweI GCATC 2 cut(s) 9, 565
MaeI CTAG 1 cut(s) 575
MaeII ACGT 1 cut(s) 117
MaeIII GTNAC 5 cut(s) 232, 290, 410, 427, 628
MalI GATC 2 cut(s) 7, 309
MboI GATC 2 cut(s) 5, 307
MhlI GDGCHC 2 cut(s) 441, 624
MluCI AATT 5 cut(s) 179, 260, 322, 343, 602
MmeI TCCRAC 3 cut(s) 180, 250, 630
MnlI CCTC 2 cut(s) 401, 480
Mph1103I ATGCAT 1 cut(s) 558
MroI TCCGGA 1 cut(s) 13
MseI TTAA 2 cut(s) 84, 600
MslI CAYNNNNRTG 1 cut(s) 561
MspA1I CMGCKG 1 cut(s) 167
MspI CCGG 3 cut(s) 14, 501, 549
MspR9I CCNGG 4 cut(s) 31, 210, 502, 549
MvaI CCWGG 2 cut(s) 31, 210
MvnI CGCG 1 cut(s) 167
NciI CCSGG 2 cut(s) 502, 549
NdeII GATC 2 cut(s) 5, 307
NlaIII CATG 6 cut(s) 218, 298, 400, 427, 526, 593
NlaIV GGNNCC 1 cut(s) 394
NmuCI GTSAC 2 cut(s) 232, 427
NsiI ATGCAT 1 cut(s) 558
NspV TTCGAA 1 cut(s) 451
PfeI GAWTC 3 cut(s) 123, 302, 453
PflFI GACNNNGTC 1 cut(s) 278
PkrI GCNGC 4 cut(s) 52, 166, 169, 484
PshAI GACNNNNGTC 1 cut(s) 191
Psp6I CCWGG 2 cut(s) 29, 208
PspGI CCWGG 2 cut(s) 29, 208
PspN4I GGNNCC 1 cut(s) 394
PsyI GACNNNGTC 1 cut(s) 278
RsaI GTAC 4 cut(s) 137, 207, 383, 643
RsaNI GTAC 4 cut(s) 136, 206, 382, 642
RseI CAYNNNNRTG 1 cut(s) 561
SacII CCGCGG 1 cut(s) 168
SaqAI TTAA 2 cut(s) 84, 600
SatI GCNGC 4 cut(s) 51, 165, 168, 483
Sau3AI GATC 2 cut(s) 5, 307
ScaI AGTACT 1 cut(s) 383
ScrFI CCNGG 4 cut(s) 31, 210, 502, 549
SduI GDGCHC 2 cut(s) 441, 624
SfaNI GCATC 2 cut(s) 9, 565
SfcI CTRYAG 2 cut(s) 201, 370
Sfr303I CCGCGG 1 cut(s) 168
SfuI TTCGAA 1 cut(s) 451
SgrBI CCGCGG 1 cut(s) 168
SmiMI CAYNNNNRTG 1 cut(s) 561
SmlI CTYRAG 2 cut(s) 91, 623
SmoI CTYRAG 2 cut(s) 91, 623
Sse9I AATT 5 cut(s) 179, 260, 322, 343, 602
SsiI CCGC 3 cut(s) 165, 167, 579
SspMI CTAG 1 cut(s) 575
StyD4I CCNGG 4 cut(s) 29, 208, 500, 547
StyI CCWWGG 2 cut(s) 574, 609
TaaI ACNGT 4 cut(s) 140, 350, 374, 634
TaiI ACGT 1 cut(s) 120
TaqI TCGA 3 cut(s) 310, 416, 451
TasI AATT 5 cut(s) 179, 260, 322, 343, 602
TatI WGTACW 2 cut(s) 135, 381
TauI GCSGC 2 cut(s) 167, 170
TfiI GAWTC 3 cut(s) 123, 302, 453
Tru1I TTAA 2 cut(s) 84, 600
Tru9I TTAA 2 cut(s) 84, 600
TseFI GTSAC 2 cut(s) 232, 427
TseI GCWGC 2 cut(s) 50, 482
Tsp45I GTSAC 2 cut(s) 232, 427
TspDTI ATGAA 2 cut(s) 192, 231
TspGWI ACGGA 3 cut(s) 128, 405, 420
Tth111I GACNNNGTC 1 cut(s) 278
XapI RAATTY 2 cut(s) 260, 602
XcmI CCANNNNNNNNNTGG 1 cut(s) 178
XmaJI CCTAGG 1 cut(s) 574
XspI CTAG 1 cut(s) 575
ZrmI AGTACT 1 cut(s) 383
Zsp2I ATGCAT 1 cut(s) 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.