Rmu_sc0017837.1_g000003

Dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017837.1
OG0000167
Physical Location & Seq
Forward (+)
11627 .. 12799
1173 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017837.1_g000003.1.cds

Sequence Viewer

Length: 852 bp
atgggggaggagaagaaggagaaggagaaggagaagaagattaaagtgggtgcttgccaatcttgtgatagttgtaccgaccaccttgagaactactgccccaaacaaatactcacgtacggtgccaagtactacgacggaaccaccacctatggaggttactctgacattatggtggccgatgaacacttcatagtccgcattccaaacaacctaccgcttgatagtgctgctccactcctatgtgccgggattacaacctacagccccttgagatattatggactagacaagcccggaatgcatgtgggtgtggttggcctaggcggcttaggccacgtcgctgtgaagtttgccaaggctatgggggtgaaggtgccagtgatcagtacttcccctaagaaagaggacgaagctattaaacaccttggagctgacttgtttttggttagtcgtgaccaagatcaaatgcaggctgccattggtaccatggatgggatcattgacacagtttctgcacaacatcctctcttgcctttgattggtttgttgaagtctcatggaaagcttgttatggttggtgcaccagaaaagcctcttgagcttccggtttttcctctactcatgggaaggaagatggtagctggtagcctcattggaggtatgaaggagacacaagagatgattgattttgcagccaagcacaacataacagcagacattgaggttatcccaattgactacttgaacaatgccatggagcgcctcgccaaagcagatgtcagataccgttttgtcattgacattggaaacacactggtcatgcggtgcacaagatggagaattagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
ADH_N ADH_zinc_N

Protein Analysis

283

Amino Acids

31.06

Weight (kDa)

7.62

Isoelectric Point (pI)

33.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37980 AT4G37980 AT4G37990
fragaria_vesca FvH4_1g19210 FvH4_1g19220 FvH4_1g19240 FvH4_1g19240 FvH4_1g19261 FvH4_1g19262 FvH4_1g19263 FvH4_1g19263 FvH4_1g19265 FvH4_1g19281 FvH4_1g19281 FvH4_7g07240 FvH4_7g07240 FvH4_7g07240
malus_domestica MD01G1042500.v1.1 MD01G1042600.v1.1 MD01G1042800.v1.1 MD01G1042900.v1.1 MD05G1034100.v1.1 MD10G1035900.v1.1 MD10G1036000.v1.1 MD10G1155000.v1.1 MD10G1155100.v1.1 MD10G1155200.v1.1 MD10G1155400.v1.1 MD10G1155700.v1.1 MD10G1155800.v1.1 MD15G1308800.v1.1 MD15G1308900.v1.1
prunus_persica Prupe.6G205600_v2.0.a1 Prupe.6G205700_v2.0.a1 Prupe.6G205800_v2.0.a1 Prupe.6G205900_v2.0.a1 Prupe.6G206300_v2.0.a1 Prupe.6G206800_v2.0.a1 Prupe.6G207100_v2.0.a1 Prupe.6G207200_v2.0.a1 Prupe.6G207300_v2.0.a1 Prupe.6G207400_v2.0.a1 Prupe.6G207500_v2.0.a1 Prupe.6G207600_v2.0.a1 Prupe.6G207700_v2.0.a1 Prupe.6G207900_v2.0.a1
pyrus_communis pycom01g06970 pycom01g06980 pycom01g06990 pycom05g02460 pycom08g00750 pycom10g13410 pycom15g27310 pycom15g27320
rosa_chinensis RchiOBHm_Chr1g0314861 RchiOBHm_Chr1g0345441 RchiOBHm_Chr1g0345451 RchiOBHm_Chr1g0345621 RchiOBHm_Chr1g0345751 RchiOBHm_Chr1g0345861 RchiOBHm_Chr1g0345871 RchiOBHm_Chr1g0345891 RchiOBHm_Chr2g0094851 RchiOBHm_Chr2g0110471 RchiOBHm_Chr2g0110511 RchiOBHm_Chr2g0110531 RchiOBHm_Chr2g0110541 RchiOBHm_Chr2g0110571 RchiOBHm_Chr5g0039381 RchiOBHm_Chr5g0039391 RchiOBHm_Chr6g0270311 RchiOBHm_Chr6g0270331 RchiOBHm_Chr6g0270411 RchiOBHm_Chr6g0270431
rosa_laevigata RLG00000000515 RLG00000013793 RLG00000013797 RLG00000013799 RLG00000016525 RLG00000017808 RLG00000017811 RLG00000017813 RLG00000017816 RLG00000017819 RLG00000017822 RLG00000017824 RLG00000017825 RLG00000028835
rosa_multiflora Rmu_co8225458.1_g000001 Rmu_sc0000389.1_g000006 Rmu_sc0000389.1_g000014 Rmu_sc0000389.1_g000023 Rmu_sc0001292.1_g000012 Rmu_sc0001292.1_g000026 Rmu_sc0002145.1_g000003 Rmu_sc0002329.1_g000033 Rmu_sc0002833.1_g000044 Rmu_sc0004316.1_g000012 Rmu_sc0004439.1_g000003 Rmu_sc0006422.1_g000028 Rmu_sc0009479.1_g000012 Rmu_sc0010489.1_g000009 Rmu_sc0010489.1_g000010 Rmu_sc0017837.1_g000003 Rmu_sc0032320.1_g000001
rosa_roxburghii Rroxscaffold_1G00050770 Rroxscaffold_2G00133110 Rroxscaffold_2G00133140 Rroxscaffold_2G00133200 Rroxscaffold_2G00133270 Rroxscaffold_2G00133290 Rroxscaffold_2G00133300 Rroxscaffold_2G00133350 Rroxscaffold_4G00292490 Rroxscaffold_4G00309020 Rroxscaffold_4G00331740 Rroxscaffold_4G00331800 Rroxscaffold_6G00404470 Rroxscaffold_7G00197950 Rroxscaffold_7G00197990 Rroxscaffold_7G00198020
rosa_rugosa Rorug01G0002500 Rorug02G0047200 Rorug02G0047300 Rorug02G0047300 Rorug02G0047400 Rorug02G0168000 Rorug02G0168000 Rorug02G0168100 Rorug02G0168100 Rorug02G0168400.1 Rorug03G0157600 Rorug03G0157700 Rorug05G0112600 Rorug06G0054600 Rorug06G0054700
rosa_samantha Rh1AG013300 Rh1AG195600 Rh1AG195700 Rh1AG196000 Rh1BG004900 Rh1BG114300 Rh2AG132300 Rh2BG095500 Rh2BG229700 Rh2BG229800 Rh2CG097400 Rh2CG221500 Rh2CG221800 Rh2CG222100 Rh2CG222200 Rh2CG222500 Rh2CG222600 Rh2CG345000 Rh5BG269700 Rh6AG172900 Rh6AG173100 Rh6CG080500 Rh6DG075900 Rh6DG164700 Rh6DG164900 Rh6DG165200 Rh6DG165300
rosa_wichuraiana Rw0G015390 Rw1G000600 Rw1G016130 Rw1G016190 Rw2G007140 Rw2G016970 Rw2G016990 Rw2G017000 Rw3G018910 Rw3G018920 Rw3G018930 Rw5G024830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 485
AccB1I GGYRCC 3 cut(s) 122, 376, 485
AciI CCGC 4 cut(s) 199, 218, 327, 826
AclWI GGATC 1 cut(s) 506
AcoI YGGCCR 1 cut(s) 177
AfaI GTAC 5 cut(s) 76, 119, 131, 391, 487
AfiI CCNNNNNNNGG 2 cut(s) 495, 542
AgsI TTSAA 2 cut(s) 553, 748
AjiI CACGTC 1 cut(s) 340
AluBI AGCT 5 cut(s) 416, 434, 568, 604, 644
AluI AGCT 5 cut(s) 416, 434, 568, 604, 644
Alw21I GWGCWC 2 cut(s) 586, 833
Alw26I GTCTC 2 cut(s) 561, 665
Alw44I GTGCAC 2 cut(s) 582, 829
AlwI GGATC 1 cut(s) 506
AlwNI CAGNNNCTG 1 cut(s) 515
AoxI GGCC 3 cut(s) 177, 319, 334
ApaLI GTGCAC 2 cut(s) 582, 829
ApeKI GCWGC 3 cut(s) 230, 476, 695
ArsI GACNNNNNNTTYG 2 cut(s) 765, 797
Asp718I GGTACC 1 cut(s) 485
AspA2I CCTAGG 1 cut(s) 322
AspLEI GCGC 1 cut(s) 765
AsuC2I CCSGG 2 cut(s) 250, 297
AsuHPI GGTGA 1 cut(s) 382
AvrII CCTAGG 1 cut(s) 322
BaeGI GKGCMC 2 cut(s) 586, 833
BanI GGYRCC 3 cut(s) 122, 376, 485
Bbv12I GWGCWC 2 cut(s) 586, 833
BbvI GCAGC 3 cut(s) 217, 463, 707
BccI CCATC 3 cut(s) 488, 631, 831
BclI TGATCA 1 cut(s) 384
BcnI CCSGG 2 cut(s) 250, 297
BcoDI GTCTC 2 cut(s) 561, 665
BfaI CTAG 2 cut(s) 287, 323
BfmI CTRYAG 1 cut(s) 262
BfoI RGCGCY 1 cut(s) 766
BglI GCCNNNNNGGC 1 cut(s) 327
BisI GCNGC 4 cut(s) 231, 328, 477, 696
BlnI CCTAGG 1 cut(s) 322
BlsI GCNGC 4 cut(s) 232, 329, 478, 697
BmcAI AGTACT 2 cut(s) 131, 391
Bme1390I CCNGG 2 cut(s) 250, 297
BmgBI CACGTC 1 cut(s) 340
BmiI GGNNCC 4 cut(s) 124, 142, 378, 487
BmrFI CCNGG 2 cut(s) 250, 297
Bpu10I CCTNAGC 1 cut(s) 331
BpuEI CTTGAG 3 cut(s) 107, 292, 620
BpuMI CCSGG 2 cut(s) 250, 297
BsaAI YACGTR 1 cut(s) 117
BsaJI CCNNGG 5 cut(s) 322, 357, 427, 489, 756
BsaWI WCCGGW 1 cut(s) 607
Bsc4I CCNNNNNNNGG 2 cut(s) 495, 542
Bse1I ACTGG 2 cut(s) 380, 822
BseDI CCNNGG 5 cut(s) 322, 357, 427, 489, 756
BseGI GGATG 2 cut(s) 499, 523
BseLI CCNNNNNNNGG 2 cut(s) 495, 542
BseNI ACTGG 2 cut(s) 380, 822
BseRI GAGGAG 1 cut(s) 23
BseSI GKGCMC 2 cut(s) 586, 833
BseXI GCAGC 3 cut(s) 217, 463, 707
BsgI GTGCAG 1 cut(s) 501
BshFI GGCC 3 cut(s) 179, 321, 336
BshNI GGYRCC 3 cut(s) 122, 376, 485
BsiHKAI GWGCWC 2 cut(s) 586, 833
BsiSI CCGG 3 cut(s) 249, 297, 608
BsiWI CGTACG 1 cut(s) 117
BslI CCNNNNNNNGG 2 cut(s) 495, 542
BsmAI GTCTC 2 cut(s) 561, 665
BsmI GAATGC 2 cut(s) 201, 306
BsnI GGCC 3 cut(s) 179, 321, 336
Bsp1286I GDGCHC 2 cut(s) 586, 833
Bsp143I GATC 3 cut(s) 384, 463, 498
Bsp19I CCATGG 2 cut(s) 489, 756
BspACI CCGC 4 cut(s) 199, 218, 327, 826
BspANI GGCC 3 cut(s) 179, 321, 336
BspLI GGNNCC 4 cut(s) 124, 142, 378, 487
BspPI GGATC 1 cut(s) 506
BspT107I GGYRCC 3 cut(s) 122, 376, 485
BsrI ACTGG 2 cut(s) 380, 822
BssECI CCNNGG 5 cut(s) 322, 357, 427, 489, 756
BssMI GATC 3 cut(s) 384, 463, 498
BssT1I CCWWGG 5 cut(s) 322, 357, 427, 489, 756
Bst4CI ACNGT 3 cut(s) 122, 511, 791
BstBAI YACGTR 1 cut(s) 117
BstC8I GCNNGC 2 cut(s) 55, 474
BstDEI CTNAG 2 cut(s) 331, 399
BstDSI CCRYGG 2 cut(s) 489, 756
BstF5I GGATG 2 cut(s) 499, 523
BstH2I RGCGCY 1 cut(s) 766
BstHHI GCGC 1 cut(s) 765
BstKTI GATC 3 cut(s) 387, 466, 501
BstMAI GTCTC 2 cut(s) 561, 665
BstMBI GATC 3 cut(s) 384, 463, 498
BstMWI GCNNNNNNNGC 4 cut(s) 301, 327, 333, 601
BstNSI RCATGY 1 cut(s) 308
BstSCI CCNGG 2 cut(s) 248, 295
BstSFI CTRYAG 1 cut(s) 262
BstSLI GKGCMC 2 cut(s) 586, 833
BstV1I GCAGC 3 cut(s) 217, 463, 707
BstXI CCANNNNNNTGG 1 cut(s) 364
BsuRI GGCC 3 cut(s) 179, 321, 336
BtgI CCRYGG 2 cut(s) 489, 756
BtrI CACGTC 1 cut(s) 340
BtsCI GGATG 2 cut(s) 499, 523
BtsIMutI CAGTG 2 cut(s) 387, 815
Cac8I GCNNGC 2 cut(s) 55, 474
CaiI CAGNNNCTG 1 cut(s) 515
CfoI GCGC 1 cut(s) 765
Csp6I GTAC 5 cut(s) 75, 118, 130, 390, 486
CviAII CATG 6 cut(s) 305, 490, 560, 625, 757, 823
CviQI GTAC 5 cut(s) 75, 118, 130, 390, 486
DdeI CTNAG 2 cut(s) 331, 399
DpnI GATC 3 cut(s) 386, 465, 500
DpnII GATC 3 cut(s) 384, 463, 498
EaeI YGGCCR 1 cut(s) 177
Eco130I CCWWGG 5 cut(s) 322, 357, 427, 489, 756
EcoT14I CCWWGG 5 cut(s) 322, 357, 427, 489, 756
EcoT22I ATGCAT 1 cut(s) 306
ErhI CCWWGG 5 cut(s) 322, 357, 427, 489, 756
FaeI CATG 6 cut(s) 308, 493, 563, 628, 760, 826
FatI CATG 6 cut(s) 304, 489, 559, 624, 756, 822
FbaI TGATCA 1 cut(s) 384
Fnu4HI GCNGC 4 cut(s) 231, 328, 477, 696
FokI GGATG 2 cut(s) 506, 510
Fsp4HI GCNGC 4 cut(s) 231, 328, 477, 696
FspBI CTAG 2 cut(s) 287, 323
GlaI GCGC 1 cut(s) 764
GluI GCNGC 4 cut(s) 231, 328, 477, 696
HaeII RGCGCY 1 cut(s) 766
HaeIII GGCC 3 cut(s) 179, 321, 336
HapII CCGG 3 cut(s) 249, 297, 608
HhaI GCGC 1 cut(s) 765
Hin1II CATG 6 cut(s) 308, 493, 563, 628, 760, 826
Hin6I GCGC 1 cut(s) 763
HinP1I GCGC 1 cut(s) 763
HindIII AAGCTT 1 cut(s) 566
HpaII CCGG 3 cut(s) 249, 297, 608
HphI GGTGA 1 cut(s) 382
Hpy166II GTNNAC 2 cut(s) 584, 831
Hpy188I TCNGA 2 cut(s) 166, 785
Hpy188III TCNNGA 2 cut(s) 455, 599
Hpy8I GTNNAC 2 cut(s) 584, 831
Hpy99I CGWCG 2 cut(s) 140, 344
HpyAV CCTTC 6 cut(s) 10, 16, 22, 367, 624, 661
HpyCH4III ACNGT 3 cut(s) 122, 511, 791
HpyCH4IV ACGT 2 cut(s) 116, 339
HpyCH4V TGCA 6 cut(s) 304, 472, 518, 584, 695, 831
HpyF10VI GCNNNNNNNGC 4 cut(s) 301, 327, 333, 601
HpyF3I CTNAG 2 cut(s) 331, 399
HpySE526I ACGT 2 cut(s) 116, 339
Hsp92II CATG 6 cut(s) 308, 493, 563, 628, 760, 826
HspAI GCGC 1 cut(s) 763
KpnI GGTACC 1 cut(s) 489
Ksp22I TGATCA 1 cut(s) 384
Kzo9I GATC 3 cut(s) 384, 463, 498
LmnI GCTCC 3 cut(s) 238, 431, 760
LpnPI CCDG 8 cut(s) 262, 310, 393, 458, 600, 621, 630, 803
Lsp1109I GCAGC 3 cut(s) 217, 463, 707
MaeI CTAG 2 cut(s) 287, 323
MaeII ACGT 2 cut(s) 116, 339
MaeIII GTNAC 2 cut(s) 158, 455
MalI GATC 3 cut(s) 386, 465, 500
MboI GATC 3 cut(s) 384, 463, 498
MboII GAAGA 4 cut(s) 25, 46, 49, 646
MfeI CAATTG 1 cut(s) 735
MhlI GDGCHC 2 cut(s) 586, 833
MluCI AATT 2 cut(s) 735, 843
MnlI CCTC 9 cut(s) 149, 400, 537, 606, 627, 653, 662, 718, 776
Mph1103I ATGCAT 1 cut(s) 306
MseI TTAA 2 cut(s) 42, 420
MslI CAYNNNNRTG 3 cut(s) 173, 241, 309
MspI CCGG 3 cut(s) 249, 297, 608
MspR9I CCNGG 2 cut(s) 250, 297
MunI CAATTG 1 cut(s) 735
Mva1269I GAATGC 2 cut(s) 201, 306
MwoI GCNNNNNNNGC 4 cut(s) 301, 327, 333, 601
NciI CCSGG 2 cut(s) 250, 297
NcoI CCATGG 2 cut(s) 489, 756
NdeII GATC 3 cut(s) 384, 463, 498
NlaIII CATG 6 cut(s) 308, 493, 563, 628, 760, 826
NlaIV GGNNCC 4 cut(s) 124, 142, 378, 487
NmuCI GTSAC 1 cut(s) 455
NsiI ATGCAT 1 cut(s) 306
NspI RCATGY 1 cut(s) 308
PctI GAATGC 2 cut(s) 201, 306
Pfl23II CGTACG 1 cut(s) 117
PkrI GCNGC 4 cut(s) 232, 329, 478, 697
Ppu21I YACGTR 1 cut(s) 117
PspLI CGTACG 1 cut(s) 117
PspN4I GGNNCC 4 cut(s) 124, 142, 378, 487
PstNI CAGNNNCTG 1 cut(s) 515
RsaI GTAC 5 cut(s) 76, 119, 131, 391, 487
RsaNI GTAC 5 cut(s) 75, 118, 130, 390, 486
RseI CAYNNNNRTG 3 cut(s) 173, 241, 309
SaqAI TTAA 2 cut(s) 42, 420
SatI GCNGC 4 cut(s) 231, 328, 477, 696
Sau3AI GATC 3 cut(s) 384, 463, 498
ScaI AGTACT 2 cut(s) 131, 391
ScrFI CCNGG 2 cut(s) 250, 297
SduI GDGCHC 2 cut(s) 586, 833
SfcI CTRYAG 1 cut(s) 262
SmiMI CAYNNNNRTG 3 cut(s) 173, 241, 309
SmlI CTYRAG 3 cut(s) 86, 271, 599
SmoI CTYRAG 3 cut(s) 86, 271, 599
Sse9I AATT 2 cut(s) 735, 843
SsiI CCGC 4 cut(s) 199, 218, 327, 826
SspMI CTAG 2 cut(s) 287, 323
StyD4I CCNGG 2 cut(s) 248, 295
StyI CCWWGG 5 cut(s) 322, 357, 427, 489, 756
TaaI ACNGT 3 cut(s) 122, 511, 791
TaiI ACGT 2 cut(s) 119, 342
TasI AATT 2 cut(s) 735, 843
TatI WGTACW 2 cut(s) 129, 389
TauI GCSGC 1 cut(s) 330
Tru1I TTAA 2 cut(s) 42, 420
Tru9I TTAA 2 cut(s) 42, 420
TscAI CASTG 2 cut(s) 387, 822
TseFI GTSAC 1 cut(s) 455
TseI GCWGC 3 cut(s) 230, 476, 695
Tsp45I GTSAC 1 cut(s) 455
TspDTI ATGAA 3 cut(s) 181, 198, 680
TspGWI ACGGA 1 cut(s) 153
TspRI CASTG 2 cut(s) 387, 822
VneI GTGCAC 2 cut(s) 582, 829
XceI RCATGY 1 cut(s) 308
XcmI CCANNNNNNNNNTGG 1 cut(s) 487
XmaJI CCTAGG 1 cut(s) 322
XspI CTAG 2 cut(s) 287, 323
ZrmI AGTACT 2 cut(s) 131, 391
Zsp2I ATGCAT 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.