Prupe.6G207100_v2.0.a1

Dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000167
Physical Location & Seq
Reverse (-)
21557663 .. 21561082
3420 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G207100.1

Sequence Viewer

Length: 732 bp
ATGGTTAAGAATGACTGGGGTTTTTCCACCCATCCTCTGGTTCCCGGGCATGAGATTGTTGGTGTAGTGACAGAGGTAGGGAGCAAAGTAGAAAAATTCAAAGTTGGGGACAAGGTAGGAGTTGGGTGCGTGGTAGGATCCTGCCAATCTTGTGATAATTGTGCAAACAATATTGAGAATTACTGCCCCAAGTATATACTCACCTACGGTGCCAAGTACCATGACGGAACCATCACATATGGAGGTTACTCTGACTTCATGGTGGCCGATGAGCACTTCGTAATTCGTGTTTCGGACAATCTTCCTCTTGATGGTGCTGCCCCTCTTCTATGCGCAGGAATCACAACCTACAGCGCATTGAGATATTATGGTCTTGACAAACCCGGTATGCATGTGGGTGTGGTTGGTCTAGGTGGTCTTGGACATGTGGCAGTGAAGTTTGCCAAGGCTATGGGGGTTAGGGTTATAATAATAAGTACCTCCCCTAATAAGAAGAAGGAAGCTATTGAACATCTTCGTGCCGATTCGTTTTTGGTCAGCCGTGATCAAGATCAGAAGCAGGCAGTCGTGGGCACAATGGATGGCATTATCGATACGGTTTCAGCAGTCCACCCTCTCTTGCCTTTAATTGCTTTGTTGAAGTCTAATGGAAAGCTTGTTATGGTTGGTGCACCAGAGAAACCCCTTGAGCTTCCAGTTTTTCCTTTGCTAATGGGTAAGCCTATCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
ADH_N ADH_zinc_N

Protein Analysis

244

Amino Acids

25.95

Weight (kDa)

7.07

Isoelectric Point (pI)

25.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37980 AT4G37980 AT4G37990
fragaria_vesca FvH4_1g19210 FvH4_1g19220 FvH4_1g19240 FvH4_1g19240 FvH4_1g19261 FvH4_1g19262 FvH4_1g19263 FvH4_1g19263 FvH4_1g19265 FvH4_1g19281 FvH4_1g19281 FvH4_7g07240 FvH4_7g07240 FvH4_7g07240
malus_domestica MD01G1042500.v1.1 MD01G1042600.v1.1 MD01G1042800.v1.1 MD01G1042900.v1.1 MD05G1034100.v1.1 MD10G1035900.v1.1 MD10G1036000.v1.1 MD10G1155000.v1.1 MD10G1155100.v1.1 MD10G1155200.v1.1 MD10G1155400.v1.1 MD10G1155700.v1.1 MD10G1155800.v1.1 MD15G1308800.v1.1 MD15G1308900.v1.1
prunus_persica Prupe.6G205600_v2.0.a1 Prupe.6G205700_v2.0.a1 Prupe.6G205800_v2.0.a1 Prupe.6G205900_v2.0.a1 Prupe.6G206300_v2.0.a1 Prupe.6G206800_v2.0.a1 Prupe.6G207100_v2.0.a1 Prupe.6G207200_v2.0.a1 Prupe.6G207300_v2.0.a1 Prupe.6G207400_v2.0.a1 Prupe.6G207500_v2.0.a1 Prupe.6G207600_v2.0.a1 Prupe.6G207700_v2.0.a1 Prupe.6G207900_v2.0.a1
pyrus_communis pycom01g06970 pycom01g06980 pycom01g06990 pycom05g02460 pycom08g00750 pycom10g13410 pycom15g27310 pycom15g27320
rosa_chinensis RchiOBHm_Chr1g0314861 RchiOBHm_Chr1g0345441 RchiOBHm_Chr1g0345451 RchiOBHm_Chr1g0345621 RchiOBHm_Chr1g0345751 RchiOBHm_Chr1g0345861 RchiOBHm_Chr1g0345871 RchiOBHm_Chr1g0345891 RchiOBHm_Chr2g0094851 RchiOBHm_Chr2g0110471 RchiOBHm_Chr2g0110511 RchiOBHm_Chr2g0110531 RchiOBHm_Chr2g0110541 RchiOBHm_Chr2g0110571 RchiOBHm_Chr5g0039381 RchiOBHm_Chr5g0039391 RchiOBHm_Chr6g0270311 RchiOBHm_Chr6g0270331 RchiOBHm_Chr6g0270411 RchiOBHm_Chr6g0270431
rosa_laevigata RLG00000000515 RLG00000013793 RLG00000013797 RLG00000013799 RLG00000016525 RLG00000017808 RLG00000017811 RLG00000017813 RLG00000017816 RLG00000017819 RLG00000017822 RLG00000017824 RLG00000017825 RLG00000028835
rosa_multiflora Rmu_co8225458.1_g000001 Rmu_sc0000389.1_g000006 Rmu_sc0000389.1_g000014 Rmu_sc0000389.1_g000023 Rmu_sc0001292.1_g000012 Rmu_sc0001292.1_g000026 Rmu_sc0002145.1_g000003 Rmu_sc0002329.1_g000033 Rmu_sc0002833.1_g000044 Rmu_sc0004316.1_g000012 Rmu_sc0004439.1_g000003 Rmu_sc0006422.1_g000028 Rmu_sc0009479.1_g000012 Rmu_sc0010489.1_g000009 Rmu_sc0010489.1_g000010 Rmu_sc0017837.1_g000003 Rmu_sc0032320.1_g000001
rosa_roxburghii Rroxscaffold_1G00050770 Rroxscaffold_2G00133110 Rroxscaffold_2G00133140 Rroxscaffold_2G00133200 Rroxscaffold_2G00133270 Rroxscaffold_2G00133290 Rroxscaffold_2G00133300 Rroxscaffold_2G00133350 Rroxscaffold_4G00292490 Rroxscaffold_4G00309020 Rroxscaffold_4G00331740 Rroxscaffold_4G00331800 Rroxscaffold_6G00404470 Rroxscaffold_7G00197950 Rroxscaffold_7G00197990 Rroxscaffold_7G00198020
rosa_rugosa Rorug01G0002500 Rorug02G0047200 Rorug02G0047300 Rorug02G0047300 Rorug02G0047400 Rorug02G0168000 Rorug02G0168000 Rorug02G0168100 Rorug02G0168100 Rorug02G0168400.1 Rorug03G0157600 Rorug03G0157700 Rorug05G0112600 Rorug06G0054600 Rorug06G0054700
rosa_samantha Rh1AG013300 Rh1AG195600 Rh1AG195700 Rh1AG196000 Rh1BG004900 Rh1BG114300 Rh2AG132300 Rh2BG095500 Rh2BG229700 Rh2BG229800 Rh2CG097400 Rh2CG221500 Rh2CG221800 Rh2CG222100 Rh2CG222200 Rh2CG222500 Rh2CG222600 Rh2CG345000 Rh5BG269700 Rh6AG172900 Rh6AG173100 Rh6CG080500 Rh6DG075900 Rh6DG164700 Rh6DG164900 Rh6DG165200 Rh6DG165300
rosa_wichuraiana Rw0G015390 Rw1G000600 Rw1G016130 Rw1G016190 Rw2G007140 Rw2G016970 Rw2G016990 Rw2G017000 Rw3G018910 Rw3G018920 Rw3G018930 Rw5G024830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 467
Acc16I TGCGCA 1 cut(s) 334
AccB1I GGYRCC 1 cut(s) 209
AccB7I CCANNNNNTGG 1 cut(s) 37
AclWI GGATC 2 cut(s) 132, 145
AcoI YGGCCR 1 cut(s) 264
AcsI RAATTY 1 cut(s) 95
AfaI GTAC 2 cut(s) 218, 478
AfiI CCNNNNNNNGG 2 cut(s) 37, 311
AflIII ACRYGT 1 cut(s) 424
AgsI TTSAA 3 cut(s) 100, 509, 640
AluBI AGCT 3 cut(s) 503, 655, 691
AluI AGCT 3 cut(s) 503, 655, 691
Alw21I GWGCWC 2 cut(s) 276, 673
Alw44I GTGCAC 1 cut(s) 669
AlwI GGATC 2 cut(s) 132, 145
Ama87I CYCGRG 1 cut(s) 44
AoxI GGCC 1 cut(s) 264
ApaLI GTGCAC 1 cut(s) 669
ApeKI GCWGC 1 cut(s) 317
ApoI RAATTY 1 cut(s) 95
Asp700I GAANNNNTTC 1 cut(s) 513
AspLEI GCGC 2 cut(s) 335, 356
AsuC2I CCSGG 3 cut(s) 45, 46, 384
AsuHPI GGTGA 1 cut(s) 193
AvaI CYCGRG 1 cut(s) 44
BaeGI GKGCMC 2 cut(s) 575, 673
BamHI GGATCC 1 cut(s) 137
BanI GGYRCC 1 cut(s) 209
Bbv12I GWGCWC 2 cut(s) 276, 673
BbvI GCAGC 1 cut(s) 304
BccI CCATC 4 cut(s) 39, 239, 305, 575
BceAI ACGGC 1 cut(s) 525
BclI TGATCA 1 cut(s) 544
BcnI CCSGG 3 cut(s) 45, 46, 384
BfaI CTAG 1 cut(s) 410
BfmI CTRYAG 1 cut(s) 349
BisI GCNGC 1 cut(s) 318
BlsI GCNGC 1 cut(s) 319
Bme1390I CCNGG 3 cut(s) 45, 46, 384
BmeT110I CYCGRG 1 cut(s) 44
BmiI GGNNCC 4 cut(s) 42, 139, 211, 229
BmrFI CCNGG 3 cut(s) 45, 46, 384
BmrI ACTGGG 1 cut(s) 25
BmuI ACTGGG 1 cut(s) 25
BpuEI CTTGAG 1 cut(s) 707
BpuMI CCSGG 3 cut(s) 45, 46, 384
Bsa29I ATCGAT 1 cut(s) 591
BsaBI GATNNNNATC 1 cut(s) 549
BsaJI CCNNGG 2 cut(s) 44, 444
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 311
Bse1I ACTGG 2 cut(s) 20, 695
Bse8I GATNNNNATC 1 cut(s) 549
BseCI ATCGAT 1 cut(s) 591
BseDI CCNNGG 2 cut(s) 44, 444
BseGI GGATG 2 cut(s) 31, 586
BseJI GATNNNNATC 1 cut(s) 549
BseLI CCNNNNNNNGG 2 cut(s) 37, 311
BseNI ACTGG 2 cut(s) 20, 695
BseSI GKGCMC 2 cut(s) 575, 673
BseXI GCAGC 1 cut(s) 304
BshFI GGCC 1 cut(s) 266
BshNI GGYRCC 1 cut(s) 209
BshVI ATCGAT 1 cut(s) 591
BsiHKAI GWGCWC 2 cut(s) 276, 673
BsiHKCI CYCGRG 1 cut(s) 44
BsiSI CCGG 2 cut(s) 45, 384
BslFI GGGAC 1 cut(s) 122
BslI CCNNNNNNNGG 2 cut(s) 37, 311
BsmFI GGGAC 1 cut(s) 122
BsnI GGCC 1 cut(s) 266
BsoBI CYCGRG 1 cut(s) 44
Bsp1286I GDGCHC 3 cut(s) 276, 575, 673
Bsp143I GATC 3 cut(s) 137, 544, 550
BspANI GGCC 1 cut(s) 266
BspDI ATCGAT 1 cut(s) 591
BspLI GGNNCC 4 cut(s) 42, 139, 211, 229
BspPI GGATC 2 cut(s) 132, 145
BspT107I GGYRCC 1 cut(s) 209
BsrI ACTGG 2 cut(s) 20, 695
BssECI CCNNGG 2 cut(s) 44, 444
BssMI GATC 3 cut(s) 137, 544, 550
BssT1I CCWWGG 1 cut(s) 444
Bst4CI ACNGT 2 cut(s) 209, 598
Bst6I CTCTTC 1 cut(s) 330
BstC8I GCNNGC 1 cut(s) 561
BstF5I GGATG 2 cut(s) 31, 586
BstHHI GCGC 2 cut(s) 335, 356
BstKTI GATC 3 cut(s) 140, 547, 553
BstMBI GATC 3 cut(s) 137, 544, 550
BstNSI RCATGY 2 cut(s) 395, 428
BstSCI CCNGG 3 cut(s) 43, 44, 382
BstSFI CTRYAG 1 cut(s) 349
BstSLI GKGCMC 2 cut(s) 575, 673
BstV1I GCAGC 1 cut(s) 304
BstX2I RGATCY 1 cut(s) 137
BstXI CCANNNNNNTGG 1 cut(s) 451
BstYI RGATCY 1 cut(s) 137
Bsu15I ATCGAT 1 cut(s) 591
BsuRI GGCC 1 cut(s) 266
BsuTUI ATCGAT 1 cut(s) 591
BtsCI GGATG 2 cut(s) 31, 586
BtsI GCAGTG 1 cut(s) 438
BtsIMutI CAGTG 1 cut(s) 438
Cac8I GCNNGC 1 cut(s) 561
CfoI GCGC 2 cut(s) 335, 356
Cfr9I CCCGGG 1 cut(s) 44
ClaI ATCGAT 1 cut(s) 591
Csp6I GTAC 2 cut(s) 217, 477
CviAII CATG 5 cut(s) 50, 221, 259, 392, 425
CviJI RGCY 7 cut(s) 266, 449, 503, 540, 655, 691, 721
CviKI_1 RGCY 7 cut(s) 266, 449, 503, 540, 655, 691, 721
CviQI GTAC 2 cut(s) 217, 477
DpnI GATC 3 cut(s) 139, 546, 552
DpnII GATC 3 cut(s) 137, 544, 550
EaeI YGGCCR 1 cut(s) 264
Eam1104I CTCTTC 1 cut(s) 330
EarI CTCTTC 1 cut(s) 330
Eco130I CCWWGG 1 cut(s) 444
Eco88I CYCGRG 1 cut(s) 44
EcoT14I CCWWGG 1 cut(s) 444
EcoT22I ATGCAT 1 cut(s) 393
ErhI CCWWGG 1 cut(s) 444
FaeI CATG 5 cut(s) 53, 224, 262, 395, 428
FaqI GGGAC 1 cut(s) 122
FatI CATG 5 cut(s) 49, 220, 258, 391, 424
FauNDI CATATG 1 cut(s) 238
FbaI TGATCA 1 cut(s) 544
Fnu4HI GCNGC 1 cut(s) 318
FokI GGATG 2 cut(s) 18, 593
Fsp4HI GCNGC 1 cut(s) 318
FspBI CTAG 1 cut(s) 410
FspI TGCGCA 1 cut(s) 334
GlaI GCGC 2 cut(s) 334, 355
GluI GCNGC 1 cut(s) 318
HaeIII GGCC 1 cut(s) 266
HapII CCGG 2 cut(s) 45, 384
HhaI GCGC 2 cut(s) 335, 356
Hin1II CATG 5 cut(s) 53, 224, 262, 395, 428
Hin6I GCGC 2 cut(s) 333, 354
HinP1I GCGC 2 cut(s) 333, 354
HindIII AAGCTT 1 cut(s) 653
HinfI GANTC 2 cut(s) 339, 524
HpaII CCGG 2 cut(s) 45, 384
HphI GGTGA 1 cut(s) 193
Hpy166II GTNNAC 2 cut(s) 610, 671
Hpy188I TCNGA 3 cut(s) 253, 295, 555
Hpy188III TCNNGA 3 cut(s) 308, 374, 548
Hpy8I GTNNAC 2 cut(s) 610, 671
HpyAV CCTTC 1 cut(s) 490
HpyCH4III ACNGT 2 cut(s) 209, 598
HpyCH4V TGCA 3 cut(s) 164, 391, 671
Hsp92II CATG 5 cut(s) 53, 224, 262, 395, 428
HspAI GCGC 2 cut(s) 333, 354
Ksp22I TGATCA 1 cut(s) 544
Kzo9I GATC 3 cut(s) 137, 544, 550
LmnI GCTCC 1 cut(s) 81
LpnPI CCDG 8 cut(s) 23, 58, 154, 321, 397, 545, 687, 708
Lsp1109I GCAGC 1 cut(s) 304
MaeI CTAG 1 cut(s) 410
MaeIII GTNAC 2 cut(s) 67, 245
MalI GATC 3 cut(s) 139, 546, 552
MboI GATC 3 cut(s) 137, 544, 550
MboII GAAGA 4 cut(s) 293, 317, 505, 506
MflI RGATCY 1 cut(s) 137
MhlI GDGCHC 3 cut(s) 276, 575, 673
MluCI AATT 5 cut(s) 95, 157, 178, 282, 627
MnlI CCTC 7 cut(s) 45, 67, 236, 315, 333, 490, 624
Mph1103I ATGCAT 1 cut(s) 393
MroXI GAANNNNTTC 1 cut(s) 513
MseI TTAA 2 cut(s) 6, 626
MslI CAYNNNNRTG 2 cut(s) 396, 516
MspI CCGG 2 cut(s) 45, 384
MspR9I CCNGG 3 cut(s) 45, 46, 384
NciI CCSGG 3 cut(s) 45, 46, 384
NdeI CATATG 1 cut(s) 238
NdeII GATC 3 cut(s) 137, 544, 550
NlaIII CATG 5 cut(s) 53, 224, 262, 395, 428
NlaIV GGNNCC 4 cut(s) 42, 139, 211, 229
NmuCI GTSAC 1 cut(s) 67
NsbI TGCGCA 1 cut(s) 334
NsiI ATGCAT 1 cut(s) 393
NspI RCATGY 2 cut(s) 395, 428
PciI ACATGT 1 cut(s) 424
PdmI GAANNNNTTC 1 cut(s) 513
PfeI GAWTC 2 cut(s) 339, 524
PflMI CCANNNNNTGG 1 cut(s) 37
PkrI GCNGC 1 cut(s) 319
PscI ACATGT 1 cut(s) 424
PsiI TTATAA 1 cut(s) 467
PspN4I GGNNCC 4 cut(s) 42, 139, 211, 229
PsuI RGATCY 1 cut(s) 137
RsaI GTAC 2 cut(s) 218, 478
RsaNI GTAC 2 cut(s) 217, 477
RseI CAYNNNNRTG 2 cut(s) 396, 516
SaqAI TTAA 2 cut(s) 6, 626
SatI GCNGC 1 cut(s) 318
Sau3AI GATC 3 cut(s) 137, 544, 550
ScrFI CCNGG 3 cut(s) 45, 46, 384
SduI GDGCHC 3 cut(s) 276, 575, 673
SfcI CTRYAG 1 cut(s) 349
SmaI CCCGGG 1 cut(s) 46
SmiMI CAYNNNNRTG 2 cut(s) 396, 516
SmlI CTYRAG 1 cut(s) 686
SmoI CTYRAG 1 cut(s) 686
Sse9I AATT 5 cut(s) 95, 157, 178, 282, 627
SspI AATATT 1 cut(s) 172
SspMI CTAG 1 cut(s) 410
StyD4I CCNGG 3 cut(s) 43, 44, 382
StyI CCWWGG 1 cut(s) 444
TaaI ACNGT 2 cut(s) 209, 598
TaqI TCGA 1 cut(s) 591
TasI AATT 5 cut(s) 95, 157, 178, 282, 627
TfiI GAWTC 2 cut(s) 339, 524
Tru1I TTAA 2 cut(s) 6, 626
Tru9I TTAA 2 cut(s) 6, 626
TscAI CASTG 1 cut(s) 438
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 1 cut(s) 317
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 1 cut(s) 247
TspGWI ACGGA 1 cut(s) 240
TspMI CCCGGG 1 cut(s) 44
TspRI CASTG 1 cut(s) 438
Van91I CCANNNNNTGG 1 cut(s) 37
VneI GTGCAC 1 cut(s) 669
XapI RAATTY 1 cut(s) 95
XceI RCATGY 2 cut(s) 395, 428
XcmI CCANNNNNNNNNTGG 1 cut(s) 34
XmaI CCCGGG 1 cut(s) 44
XmnI GAANNNNTTC 1 cut(s) 513
XspI CTAG 1 cut(s) 410
Zsp2I ATGCAT 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.