Rroxscaffold_7G00197950

Cinnamyl alcohol dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000167
Physical Location & Seq
Forward (+)
42646020 .. 42651355
5336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00197950.1

Sequence Viewer

Length: 504 bp
ATGATAGATTTGGCAGCCAAACACAACATAACGGCCGACATCGAAGTTATACCCATCGATTATTTGAACACTTCCATGGAGCATCTTGCCAAAGGAGATGTTAGATACCGGTTTGTCATTGATATCGGAAACACATTAAAAAACAACTTGAGAAAAAACAAATGGGAGAAAGAGCTTCGAAAAAAGGAGGAGGAGATAAGATATATGACCGTGGAGAAAGATAATTTGAAGAAAAAACTGAACGAAAAGGAACGAGGAACTAAGGAAAATCAAGGAGGACATGGTGAATGCGGAGGAACGAAATGCTACACTTGTGACCGAGAATTTCGCCTTGCATCATCGGTGAAGGAGTTAGAGATAAAATTGAAGGAATTGGAGCAAATGTTGAGCCCAAAGACTCACACCTCAACAAGCAGCTCAGCGCACGGCTCCCCACCACCTAACTCGGCAGAAGAAAAAAATGAATCAAATAGAGCTGCATCTAAGGCTGCTGAAAACACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
ADH_N ADH_zinc_N

Protein Analysis

167

Amino Acids

18.95

Weight (kDa)

8.34

Isoelectric Point (pI)

35.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37980 AT4G37980 AT4G37990
fragaria_vesca FvH4_1g19210 FvH4_1g19220 FvH4_1g19240 FvH4_1g19240 FvH4_1g19261 FvH4_1g19262 FvH4_1g19263 FvH4_1g19263 FvH4_1g19265 FvH4_1g19281 FvH4_1g19281 FvH4_7g07240 FvH4_7g07240 FvH4_7g07240
malus_domestica MD01G1042500.v1.1 MD01G1042600.v1.1 MD01G1042800.v1.1 MD01G1042900.v1.1 MD05G1034100.v1.1 MD10G1035900.v1.1 MD10G1036000.v1.1 MD10G1155000.v1.1 MD10G1155100.v1.1 MD10G1155200.v1.1 MD10G1155400.v1.1 MD10G1155700.v1.1 MD10G1155800.v1.1 MD15G1308800.v1.1 MD15G1308900.v1.1
prunus_persica Prupe.6G205600_v2.0.a1 Prupe.6G205700_v2.0.a1 Prupe.6G205800_v2.0.a1 Prupe.6G205900_v2.0.a1 Prupe.6G206300_v2.0.a1 Prupe.6G206800_v2.0.a1 Prupe.6G207100_v2.0.a1 Prupe.6G207200_v2.0.a1 Prupe.6G207300_v2.0.a1 Prupe.6G207400_v2.0.a1 Prupe.6G207500_v2.0.a1 Prupe.6G207600_v2.0.a1 Prupe.6G207700_v2.0.a1 Prupe.6G207900_v2.0.a1
pyrus_communis pycom01g06970 pycom01g06980 pycom01g06990 pycom05g02460 pycom08g00750 pycom10g13410 pycom15g27310 pycom15g27320
rosa_chinensis RchiOBHm_Chr1g0314861 RchiOBHm_Chr1g0345441 RchiOBHm_Chr1g0345451 RchiOBHm_Chr1g0345621 RchiOBHm_Chr1g0345751 RchiOBHm_Chr1g0345861 RchiOBHm_Chr1g0345871 RchiOBHm_Chr1g0345891 RchiOBHm_Chr2g0094851 RchiOBHm_Chr2g0110471 RchiOBHm_Chr2g0110511 RchiOBHm_Chr2g0110531 RchiOBHm_Chr2g0110541 RchiOBHm_Chr2g0110571 RchiOBHm_Chr5g0039381 RchiOBHm_Chr5g0039391 RchiOBHm_Chr6g0270311 RchiOBHm_Chr6g0270331 RchiOBHm_Chr6g0270411 RchiOBHm_Chr6g0270431
rosa_laevigata RLG00000000515 RLG00000013793 RLG00000013797 RLG00000013799 RLG00000016525 RLG00000017808 RLG00000017811 RLG00000017813 RLG00000017816 RLG00000017819 RLG00000017822 RLG00000017824 RLG00000017825 RLG00000028835
rosa_multiflora Rmu_co8225458.1_g000001 Rmu_sc0000389.1_g000006 Rmu_sc0000389.1_g000014 Rmu_sc0000389.1_g000023 Rmu_sc0001292.1_g000012 Rmu_sc0001292.1_g000026 Rmu_sc0002145.1_g000003 Rmu_sc0002329.1_g000033 Rmu_sc0002833.1_g000044 Rmu_sc0004316.1_g000012 Rmu_sc0004439.1_g000003 Rmu_sc0006422.1_g000028 Rmu_sc0009479.1_g000012 Rmu_sc0010489.1_g000009 Rmu_sc0010489.1_g000010 Rmu_sc0017837.1_g000003 Rmu_sc0032320.1_g000001
rosa_roxburghii Rroxscaffold_1G00050770 Rroxscaffold_2G00133110 Rroxscaffold_2G00133140 Rroxscaffold_2G00133200 Rroxscaffold_2G00133270 Rroxscaffold_2G00133290 Rroxscaffold_2G00133300 Rroxscaffold_2G00133350 Rroxscaffold_4G00292490 Rroxscaffold_4G00309020 Rroxscaffold_4G00331740 Rroxscaffold_4G00331800 Rroxscaffold_6G00404470 Rroxscaffold_7G00197950 Rroxscaffold_7G00197990 Rroxscaffold_7G00198020
rosa_rugosa Rorug01G0002500 Rorug02G0047200 Rorug02G0047300 Rorug02G0047300 Rorug02G0047400 Rorug02G0168000 Rorug02G0168000 Rorug02G0168100 Rorug02G0168100 Rorug02G0168400.1 Rorug03G0157600 Rorug03G0157700 Rorug05G0112600 Rorug06G0054600 Rorug06G0054700
rosa_samantha Rh1AG013300 Rh1AG195600 Rh1AG195700 Rh1AG196000 Rh1BG004900 Rh1BG114300 Rh2AG132300 Rh2BG095500 Rh2BG229700 Rh2BG229800 Rh2CG097400 Rh2CG221500 Rh2CG221800 Rh2CG222100 Rh2CG222200 Rh2CG222500 Rh2CG222600 Rh2CG345000 Rh5BG269700 Rh6AG172900 Rh6AG173100 Rh6CG080500 Rh6DG075900 Rh6DG164700 Rh6DG164900 Rh6DG165200 Rh6DG165300
rosa_wichuraiana Rw0G015390 Rw1G000600 Rw1G016130 Rw1G016190 Rw2G007140 Rw2G016970 Rw2G016990 Rw2G017000 Rw3G018910 Rw3G018920 Rw3G018930 Rw5G024830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 291
AcoI YGGCCR 1 cut(s) 33
AcsI RAATTY 1 cut(s) 323
AgeI ACCGGT 1 cut(s) 108
AgsI TTSAA 3 cut(s) 67, 229, 367
AluBI AGCT 3 cut(s) 175, 417, 476
AluI AGCT 3 cut(s) 175, 417, 476
AoxI GGCC 1 cut(s) 33
ApeKI GCWGC 4 cut(s) 14, 414, 476, 488
ApoI RAATTY 1 cut(s) 323
AsiGI ACCGGT 1 cut(s) 108
AspLEI GCGC 1 cut(s) 424
AsuHPI GGTGA 2 cut(s) 296, 355
AsuII TTCGAA 1 cut(s) 178
BanII GRGCYC 1 cut(s) 392
BbvI GCAGC 4 cut(s) 26, 426, 463, 475
BccI CCATC 1 cut(s) 62
BceAI ACGGC 2 cut(s) 48, 442
BisI GCNGC 4 cut(s) 15, 415, 477, 489
BlpI GCTNAGC 1 cut(s) 418
BlsI GCNGC 4 cut(s) 16, 416, 478, 490
BmiI GGNNCC 1 cut(s) 430
BmsI GCATC 3 cut(s) 91, 344, 488
Bpu1102I GCTNAGC 1 cut(s) 418
Bpu14I TTCGAA 1 cut(s) 178
BpuEI CTTGAG 1 cut(s) 169
Bsa29I ATCGAT 1 cut(s) 57
BsaJI CCNNGG 2 cut(s) 75, 210
BsaWI WCCGGW 1 cut(s) 108
BsaXI ACNNNNNCTCC 2 cut(s) 368, 398
Bse118I RCCGGY 1 cut(s) 108
BseCI ATCGAT 1 cut(s) 57
BseDI CCNNGG 2 cut(s) 75, 210
BseMII CTCAG 1 cut(s) 432
BseRI GAGGAG 2 cut(s) 203, 206
BseX3I CGGCCG 1 cut(s) 33
BseXI GCAGC 4 cut(s) 26, 426, 463, 475
Bsh1285I CGRYCG 1 cut(s) 36
BshFI GGCC 1 cut(s) 35
BshTI ACCGGT 1 cut(s) 108
BshVI ATCGAT 1 cut(s) 57
BsiEI CGRYCG 1 cut(s) 36
BsiSI CCGG 1 cut(s) 109
BsmI GAATGC 1 cut(s) 293
BsnI GGCC 1 cut(s) 35
Bsp119I TTCGAA 1 cut(s) 178
Bsp1286I GDGCHC 1 cut(s) 392
Bsp1720I GCTNAGC 1 cut(s) 418
Bsp19I CCATGG 1 cut(s) 75
BspACI CCGC 1 cut(s) 291
BspANI GGCC 1 cut(s) 35
BspCNI CTCAG 1 cut(s) 431
BspDI ATCGAT 1 cut(s) 57
BspLI GGNNCC 1 cut(s) 430
BspT104I TTCGAA 1 cut(s) 178
BsrFI RCCGGY 1 cut(s) 108
BssAI RCCGGY 1 cut(s) 108
BssECI CCNNGG 2 cut(s) 75, 210
BssT1I CCWWGG 1 cut(s) 75
Bst4CI ACNGT 1 cut(s) 211
BstBI TTCGAA 1 cut(s) 178
BstDEI CTNAG 3 cut(s) 261, 418, 483
BstDSI CCRYGG 2 cut(s) 75, 210
BstHHI GCGC 1 cut(s) 424
BstMCI CGRYCG 1 cut(s) 36
BstMWI GCNNNNNNNGC 1 cut(s) 485
BstV1I GCAGC 4 cut(s) 26, 426, 463, 475
BstZI CGGCCG 1 cut(s) 33
Bsu15I ATCGAT 1 cut(s) 57
BsuRI GGCC 1 cut(s) 35
BsuTUI ATCGAT 1 cut(s) 57
BtgI CCRYGG 2 cut(s) 75, 210
CfoI GCGC 1 cut(s) 424
Cfr10I RCCGGY 1 cut(s) 108
ClaI ATCGAT 1 cut(s) 57
CspAI ACCGGT 1 cut(s) 108
CviAII CATG 2 cut(s) 76, 281
CviJI RGCY 8 cut(s) 17, 35, 175, 390, 417, 429, 476, 488
CviKI_1 RGCY 8 cut(s) 17, 35, 175, 390, 417, 429, 476, 488
DdeI CTNAG 3 cut(s) 261, 418, 483
EaeI YGGCCR 1 cut(s) 33
EagI CGGCCG 1 cut(s) 33
EclXI CGGCCG 1 cut(s) 33
Eco130I CCWWGG 1 cut(s) 75
Eco24I GRGCYC 1 cut(s) 392
Eco32I GATATC 1 cut(s) 124
Eco52I CGGCCG 1 cut(s) 33
EcoRV GATATC 1 cut(s) 124
EcoT14I CCWWGG 1 cut(s) 75
EcoT38I GRGCYC 1 cut(s) 392
ErhI CCWWGG 1 cut(s) 75
FaeI CATG 2 cut(s) 79, 284
FaiI YATR 7 cut(s) 29, 50, 77, 204, 206, 282, 502
FatI CATG 2 cut(s) 75, 280
Fnu4HI GCNGC 4 cut(s) 15, 415, 477, 489
FriOI GRGCYC 1 cut(s) 392
Fsp4HI GCNGC 4 cut(s) 15, 415, 477, 489
GlaI GCGC 1 cut(s) 423
GluI GCNGC 4 cut(s) 15, 415, 477, 489
HaeIII GGCC 1 cut(s) 35
HapII CCGG 1 cut(s) 109
HhaI GCGC 1 cut(s) 424
Hin1II CATG 2 cut(s) 79, 284
Hin6I GCGC 1 cut(s) 422
HinP1I GCGC 1 cut(s) 422
HinfI GANTC 2 cut(s) 397, 464
HpaII CCGG 1 cut(s) 109
HphI GGTGA 2 cut(s) 296, 355
Hpy188I TCNGA 1 cut(s) 128
HpyAV CCTTC 2 cut(s) 340, 361
HpyCH4III ACNGT 1 cut(s) 211
HpyCH4V TGCA 2 cut(s) 335, 479
HpyF10VI GCNNNNNNNGC 1 cut(s) 485
HpyF3I CTNAG 3 cut(s) 261, 418, 483
Hsp92II CATG 2 cut(s) 79, 284
HspAI GCGC 1 cut(s) 422
LmnI GCTCC 3 cut(s) 79, 376, 434
LpnPI CCDG 1 cut(s) 122
Lsp1109I GCAGC 4 cut(s) 26, 426, 463, 475
LweI GCATC 3 cut(s) 91, 344, 488
MaeIII GTNAC 1 cut(s) 314
MboII GAAGA 2 cut(s) 241, 464
MhlI GDGCHC 1 cut(s) 392
MluCI AATT 4 cut(s) 223, 323, 362, 371
MlyI GAGTC 1 cut(s) 391
MnlI CCTC 6 cut(s) 181, 184, 248, 269, 287, 415
MseI TTAA 1 cut(s) 137
MslI CAYNNNNRTG 1 cut(s) 74
MspI CCGG 1 cut(s) 109
Mva1269I GAATGC 1 cut(s) 293
MwoI GCNNNNNNNGC 1 cut(s) 485
NcoI CCATGG 1 cut(s) 75
NlaIII CATG 2 cut(s) 79, 284
NlaIV GGNNCC 1 cut(s) 430
NmeAIII GCCGAG 1 cut(s) 425
NmuCI GTSAC 1 cut(s) 314
NspV TTCGAA 1 cut(s) 178
PctI GAATGC 1 cut(s) 293
PfeI GAWTC 1 cut(s) 464
PinAI ACCGGT 1 cut(s) 108
PkrI GCNGC 4 cut(s) 16, 416, 478, 490
PleI GAGTC 1 cut(s) 391
PpsI GAGTC 1 cut(s) 391
PspN4I GGNNCC 1 cut(s) 430
RseI CAYNNNNRTG 1 cut(s) 74
SaqAI TTAA 1 cut(s) 137
SatI GCNGC 4 cut(s) 15, 415, 477, 489
SchI GAGTC 1 cut(s) 391
SduI GDGCHC 1 cut(s) 392
SetI ASST 5 cut(s) 177, 407, 419, 442, 478
SfaNI GCATC 3 cut(s) 91, 344, 488
SfuI TTCGAA 1 cut(s) 178
SmiMI CAYNNNNRTG 1 cut(s) 74
SmlI CTYRAG 1 cut(s) 148
SmoI CTYRAG 1 cut(s) 148
Sse9I AATT 4 cut(s) 223, 323, 362, 371
SsiI CCGC 1 cut(s) 291
StyI CCWWGG 1 cut(s) 75
TaaI ACNGT 1 cut(s) 211
TaqI TCGA 3 cut(s) 42, 57, 178
TaqII GACCGA 1 cut(s) 333
TasI AATT 4 cut(s) 223, 323, 362, 371
TfiI GAWTC 1 cut(s) 464
Tru1I TTAA 1 cut(s) 137
Tru9I TTAA 1 cut(s) 137
TseFI GTSAC 1 cut(s) 314
TseI GCWGC 4 cut(s) 14, 414, 476, 488
Tsp45I GTSAC 1 cut(s) 314
TspDTI ATGAA 1 cut(s) 477
XapI RAATTY 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.