Rh2AG003700

peroxisome organization

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001014
Physical Location & Seq
Forward (+)
373354 .. 378092
4739 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG003700.1

Sequence Viewer

Length: 864 bp
ATGTCGCCGGACTGTGACGTCTGCACCTGCTGCACTTGCCAGAATGGCGGCTCCAACGGTGATCACGCCGAAGATCTGGCGTGCGCGCATTACTTGAAATCCGATCCCTCTCCGTCGTCGTTTTGCTATTCCTCTTCGGTCAAATATGTTCCTGTGCCGTTGAGCGATTCCAAGAAGCTATGGCGGGTCGTGACTGCTTCGATTAAGGGTTTCACCATCGGCGCCGGCCTCAAAGGCTGCCTCACCGTCTTCTCCATCCTAGCTAGACTCAGAAAGAGAAAGCTCTTAGCCTCTCTCAGGACTGAGGGTGCGATTATGAATAATGAAGCAATTGTTGCTGTTTTGAAGGAGACCTTGAGATATGGCACATTTGTTTCAGTGGATGAGATTATTGCTTCTTTGGGAGGCCACCGTAGGACAGCTAAGTGGAGGGCTTTGTTAGCAGGGCTTATAGCAGGACCGTCTATGCTTCTTACCGGGCATAACACGCAGCATACGTGCTTGGCTGTATACAAACTTATGAGTGCTGCCGTGTTGGCCACGCGTTGTGGGATTAAAAGCAAACGGTTTGGTCGTGTTTGTAGACCTCTCACTTGGAAGCACTGTGACATTTTCCTTATGTGTCTCTCCTCTTCACAAATTCTCCCCTTCTTGACACAGGGGACAAAAACCAAGTTTGTCTTTGCAAGCCCAGCCAAATCTGCAGAGATCCTTTTCAAGTATATTTCTGCTGAGCATGTTCCTGTAAAATATGGAGGTTTGAGTGTGGATTACTGTGAGTGCAACCCAGAATTCACCATTGCTGATCCAGTCACTAAAGTAACCATATCAAACTTGGGACAAAGAAGACTTTGGAAATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TMEM135_C_rich

Protein Analysis

287

Amino Acids

31.32

Weight (kDa)

9.37

Isoelectric Point (pI)

45.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 862
AarI CACCTGC 1 cut(s) 35
AasI GACNNNNNNGTC 1 cut(s) 17
AatII GACGTC 1 cut(s) 21
Acc36I ACCTGC 1 cut(s) 35
AccB1I GGYRCC 1 cut(s) 221
AccI GTMKAC 2 cut(s) 510, 583
AccII CGCG 2 cut(s) 86, 544
AciI CCGC 2 cut(s) 48, 184
AclWI GGATC 3 cut(s) 98, 703, 800
AcoI YGGCCR 1 cut(s) 537
AcsI RAATTY 2 cut(s) 639, 791
AcyI GRCGYC 2 cut(s) 18, 222
AfiI CCNNNNNNNGG 1 cut(s) 297
AflIII ACRYGT 1 cut(s) 542
AgsI TTSAA 3 cut(s) 97, 346, 718
AluBI AGCT 4 cut(s) 178, 263, 283, 422
AluI AGCT 4 cut(s) 178, 263, 283, 422
Alw26I GTCTC 2 cut(s) 344, 629
AlwI GGATC 3 cut(s) 98, 703, 800
AoxI GGCC 3 cut(s) 226, 406, 537
ApeKI GCWGC 4 cut(s) 30, 237, 490, 527
ApoI RAATTY 2 cut(s) 639, 791
AspLEI GCGC 3 cut(s) 86, 88, 224
AspS9I GGNCC 1 cut(s) 458
AsuC2I CCSGG 1 cut(s) 478
AsuHPI GGTGA 4 cut(s) 71, 205, 235, 787
AvaII GGWCC 1 cut(s) 458
BalI TGGCCA 1 cut(s) 539
BanI GGYRCC 1 cut(s) 221
BbsI GAAGAC 2 cut(s) 241, 853
BbvI GCAGC 4 cut(s) 17, 224, 502, 514
BccI CCATC 2 cut(s) 224, 263
BceAI ACGGC 2 cut(s) 142, 515
BclI TGATCA 1 cut(s) 61
BcnI CCSGG 1 cut(s) 478
BcoDI GTCTC 2 cut(s) 344, 629
BfaI CTAG 2 cut(s) 260, 264
BfmI CTRYAG 1 cut(s) 702
BfoI RGCGCY 1 cut(s) 225
BfuAI ACCTGC 1 cut(s) 35
BglI GCCNNNNNGGC 3 cut(s) 45, 234, 536
BglII AGATCT 1 cut(s) 73
BisI GCNGC 5 cut(s) 31, 49, 238, 491, 528
BlpI GCTNAGC 1 cut(s) 732
BlsI GCNGC 5 cut(s) 32, 50, 239, 492, 529
Bme1390I CCNGG 1 cut(s) 478
Bme18I GGWCC 1 cut(s) 458
BmgT120I GGNCC 1 cut(s) 458
BmiI GGNNCC 2 cut(s) 52, 223
BmrFI CCNGG 1 cut(s) 478
BpiI GAAGAC 2 cut(s) 241, 853
Bpu1102I GCTNAGC 1 cut(s) 732
BpuEI CTTGAG 1 cut(s) 376
BpuMI CCSGG 1 cut(s) 478
BsaAI YACGTR 1 cut(s) 498
BsaHI GRCGYC 2 cut(s) 18, 222
BsaI GGTCTC 1 cut(s) 344
BsaXI ACNNNNNCTCC 2 cut(s) 627, 657
Bsc4I CCNNNNNNNGG 1 cut(s) 297
Bse118I RCCGGY 1 cut(s) 224
Bse1I ACTGG 1 cut(s) 809
Bse3DI GCAATG 1 cut(s) 798
BseGI GGATG 2 cut(s) 255, 388
BseLI CCNNNNNNNGG 1 cut(s) 297
BseMI GCAATG 1 cut(s) 798
BseMII CTCAG 4 cut(s) 283, 294, 310, 723
BseNI ACTGG 1 cut(s) 809
BsePI GCGCGC 1 cut(s) 84
BseRI GAGGAG 1 cut(s) 619
BseXI GCAGC 4 cut(s) 17, 224, 502, 514
BseYI CCCAGC 1 cut(s) 691
BsgI GTGCAG 2 cut(s) 7, 16
Bsh1236I CGCG 2 cut(s) 86, 544
BshFI GGCC 3 cut(s) 228, 408, 539
BshNI GGYRCC 1 cut(s) 221
BsiSI CCGG 3 cut(s) 8, 225, 477
BslFI GGGAC 2 cut(s) 676, 852
BslI CCNNNNNNNGG 1 cut(s) 297
BsmAI GTCTC 2 cut(s) 344, 629
BsmFI GGGAC 2 cut(s) 676, 852
BsnI GGCC 3 cut(s) 228, 408, 539
Bso31I GGTCTC 1 cut(s) 344
Bsp143I GATC 5 cut(s) 61, 73, 103, 708, 805
Bsp1720I GCTNAGC 1 cut(s) 732
BspACI CCGC 2 cut(s) 48, 184
BspANI GGCC 3 cut(s) 228, 408, 539
BspCNI CTCAG 4 cut(s) 282, 295, 309, 724
BspFNI CGCG 2 cut(s) 86, 544
BspLI GGNNCC 2 cut(s) 52, 223
BspMAI CTGCAG 1 cut(s) 706
BspMI ACCTGC 1 cut(s) 35
BspPI GGATC 3 cut(s) 98, 703, 800
BspT107I GGYRCC 1 cut(s) 221
BspTNI GGTCTC 1 cut(s) 344
BsrDI GCAATG 1 cut(s) 798
BsrFI RCCGGY 1 cut(s) 224
BsrI ACTGG 1 cut(s) 809
BssAI RCCGGY 1 cut(s) 224
BssHII GCGCGC 1 cut(s) 84
BssMI GATC 5 cut(s) 61, 73, 103, 708, 805
BssNAI GTATAC 1 cut(s) 511
BssNI GRCGYC 2 cut(s) 18, 222
Bst1107I GTATAC 1 cut(s) 511
Bst4CI ACNGT 8 cut(s) 14, 59, 247, 413, 462, 567, 605, 776
Bst6I CTCTTC 2 cut(s) 139, 637
BstACI GRCGYC 2 cut(s) 18, 222
BstAPI GCANNNNNTGC 2 cut(s) 30, 335
BstBAI YACGTR 1 cut(s) 498
BstC8I GCNNGC 4 cut(s) 82, 86, 226, 688
BstDEI CTNAG 6 cut(s) 269, 286, 296, 303, 423, 732
BstENI CCTNNNNNAGG 1 cut(s) 295
BstF5I GGATG 2 cut(s) 255, 388
BstFNI CGCG 2 cut(s) 86, 544
BstH2I RGCGCY 1 cut(s) 225
BstHHI GCGC 3 cut(s) 86, 88, 224
BstKTI GATC 5 cut(s) 64, 76, 106, 711, 808
BstMAI GTCTC 2 cut(s) 344, 629
BstMBI GATC 5 cut(s) 61, 73, 103, 708, 805
BstNSI RCATGY 1 cut(s) 740
BstSCI CCNGG 1 cut(s) 476
BstSFI CTRYAG 1 cut(s) 702
BstUI CGCG 2 cut(s) 86, 544
BstV1I GCAGC 4 cut(s) 17, 224, 502, 514
BstV2I GAAGAC 2 cut(s) 241, 853
BstX2I RGATCY 2 cut(s) 73, 708
BstYI RGATCY 2 cut(s) 73, 708
BstZ17I GTATAC 1 cut(s) 511
BsuRI GGCC 3 cut(s) 228, 408, 539
BtsCI GGATG 2 cut(s) 255, 388
BtsIMutI CAGTG 2 cut(s) 384, 601
BveI ACCTGC 1 cut(s) 35
Cac8I GCNNGC 4 cut(s) 82, 86, 226, 688
CfoI GCGC 3 cut(s) 86, 88, 224
Cfr10I RCCGGY 1 cut(s) 224
Cfr13I GGNCC 1 cut(s) 458
CviAII CATG 1 cut(s) 737
DdeI CTNAG 6 cut(s) 269, 286, 296, 303, 423, 732
DinI GGCGCC 1 cut(s) 223
DpnI GATC 5 cut(s) 63, 75, 105, 710, 807
DpnII GATC 5 cut(s) 61, 73, 103, 708, 805
DrdI GACNNNNNNGTC 1 cut(s) 17
DseDI GACNNNNNNGTC 1 cut(s) 17
EaeI YGGCCR 1 cut(s) 537
Eam1104I CTCTTC 2 cut(s) 139, 637
EarI CTCTTC 2 cut(s) 139, 637
Eco31I GGTCTC 1 cut(s) 344
Eco47I GGWCC 1 cut(s) 458
EcoNI CCTNNNNNAGG 1 cut(s) 295
EcoRI GAATTC 1 cut(s) 791
EgeI GGCGCC 1 cut(s) 223
EheI GGCGCC 1 cut(s) 223
FaeI CATG 1 cut(s) 740
FalI AAGNNNNNCTT 4 cut(s) 338, 370, 665, 697
FaqI GGGAC 2 cut(s) 676, 852
FatI CATG 1 cut(s) 736
FauI CCCGC 1 cut(s) 177
FbaI TGATCA 1 cut(s) 61
FblI GTMKAC 2 cut(s) 510, 583
Fnu4HI GCNGC 5 cut(s) 31, 49, 238, 491, 528
FokI GGATG 2 cut(s) 242, 395
Fsp4HI GCNGC 5 cut(s) 31, 49, 238, 491, 528
FspBI CTAG 2 cut(s) 260, 264
GlaI GCGC 3 cut(s) 85, 87, 223
GluI GCNGC 5 cut(s) 31, 49, 238, 491, 528
GsaI CCCAGC 1 cut(s) 695
HaeII RGCGCY 1 cut(s) 225
HaeIII GGCC 3 cut(s) 228, 408, 539
HapII CCGG 3 cut(s) 8, 225, 477
HhaI GCGC 3 cut(s) 86, 88, 224
Hin1I GRCGYC 2 cut(s) 18, 222
Hin1II CATG 1 cut(s) 740
Hin6I GCGC 3 cut(s) 84, 86, 222
HinP1I GCGC 3 cut(s) 84, 86, 222
HinfI GANTC 2 cut(s) 167, 267
HpaII CCGG 3 cut(s) 8, 225, 477
HphI GGTGA 4 cut(s) 71, 205, 235, 787
Hpy166II GTNNAC 2 cut(s) 511, 584
Hpy188I TCNGA 2 cut(s) 103, 272
Hpy188III TCNNGA 3 cut(s) 190, 298, 652
Hpy8I GTNNAC 2 cut(s) 511, 584
Hpy99I CGWCG 2 cut(s) 118, 121
HpyAV CCTTC 2 cut(s) 340, 658
HpyCH4III ACNGT 8 cut(s) 14, 59, 247, 413, 462, 567, 605, 776
HpyCH4IV ACGT 2 cut(s) 18, 497
HpyCH4V TGCA 5 cut(s) 24, 33, 686, 704, 783
HpyF3I CTNAG 6 cut(s) 269, 286, 296, 303, 423, 732
HpySE526I ACGT 2 cut(s) 18, 497
Hsp92I GRCGYC 2 cut(s) 18, 222
Hsp92II CATG 1 cut(s) 740
HspAI GCGC 3 cut(s) 84, 86, 222
KasI GGCGCC 1 cut(s) 221
KroI GCCGGC 1 cut(s) 224
KroNI GCCGGC 1 cut(s) 226
Ksp22I TGATCA 1 cut(s) 61
Kzo9I GATC 5 cut(s) 61, 73, 103, 708, 805
LmnI GCTCC 1 cut(s) 56
Lsp1109I GCAGC 4 cut(s) 17, 224, 502, 514
MaeI CTAG 2 cut(s) 260, 264
MaeII ACGT 2 cut(s) 18, 497
MaeIII GTNAC 5 cut(s) 14, 190, 605, 811, 820
MalI GATC 5 cut(s) 63, 75, 105, 710, 807
MboI GATC 5 cut(s) 61, 73, 103, 708, 805
MboII GAAGA 5 cut(s) 83, 126, 241, 624, 858
MfeI CAATTG 1 cut(s) 330
MflI RGATCY 2 cut(s) 73, 708
MlsI TGGCCA 1 cut(s) 539
MluCI AATT 4 cut(s) 330, 639, 791, 857
MluI ACGCGT 1 cut(s) 542
MluNI TGGCCA 1 cut(s) 539
Mly113I GGCGCC 1 cut(s) 222
MlyI GAGTC 1 cut(s) 261
MmeI TCCRAC 1 cut(s) 78
Mox20I TGGCCA 1 cut(s) 539
MroNI GCCGGC 1 cut(s) 224
MscI TGGCCA 1 cut(s) 539
MseI TTAA 2 cut(s) 204, 555
Msp20I TGGCCA 1 cut(s) 539
MspI CCGG 3 cut(s) 8, 225, 477
MspR9I CCNGG 1 cut(s) 478
MunI CAATTG 1 cut(s) 330
MvnI CGCG 2 cut(s) 86, 544
NaeI GCCGGC 1 cut(s) 226
NarI GGCGCC 1 cut(s) 222
NciI CCSGG 1 cut(s) 478
NdeII GATC 5 cut(s) 61, 73, 103, 708, 805
NgoMIV GCCGGC 1 cut(s) 224
NlaIII CATG 1 cut(s) 740
NlaIV GGNNCC 2 cut(s) 52, 223
NmuCI GTSAC 4 cut(s) 14, 190, 605, 811
NspI RCATGY 1 cut(s) 740
PaqCI CACCTGC 1 cut(s) 35
PauI GCGCGC 1 cut(s) 84
PcsI WCGNNNNNNNCGW 2 cut(s) 494, 571
PdiI GCCGGC 1 cut(s) 226
PfeI GAWTC 1 cut(s) 167
PkrI GCNGC 5 cut(s) 32, 50, 239, 492, 529
PleI GAGTC 1 cut(s) 261
PluTI GGCGCC 1 cut(s) 225
PpsI GAGTC 1 cut(s) 261
Ppu21I YACGTR 1 cut(s) 498
PsiI TTATAA 1 cut(s) 862
PspFI CCCAGC 1 cut(s) 691
PspN4I GGNNCC 2 cut(s) 52, 223
PspPI GGNCC 1 cut(s) 458
PstI CTGCAG 1 cut(s) 706
PsuI RGATCY 2 cut(s) 73, 708
PteI GCGCGC 1 cut(s) 84
SaqAI TTAA 2 cut(s) 204, 555
SatI GCNGC 5 cut(s) 31, 49, 238, 491, 528
Sau3AI GATC 5 cut(s) 61, 73, 103, 708, 805
Sau96I GGNCC 1 cut(s) 458
SchI GAGTC 1 cut(s) 261
ScrFI CCNGG 1 cut(s) 478
SfcI CTRYAG 1 cut(s) 702
SfoI GGCGCC 1 cut(s) 223
SinI GGWCC 1 cut(s) 458
SmlI CTYRAG 1 cut(s) 355
SmoI CTYRAG 1 cut(s) 355
Sse9I AATT 4 cut(s) 330, 639, 791, 857
SsiI CCGC 2 cut(s) 48, 184
SspDI GGCGCC 1 cut(s) 221
SspMI CTAG 2 cut(s) 260, 264
StyD4I CCNGG 1 cut(s) 476
TaaI ACNGT 8 cut(s) 14, 59, 247, 413, 462, 567, 605, 776
TaiI ACGT 2 cut(s) 21, 500
TaqI TCGA 1 cut(s) 200
TaqII GACCGA 1 cut(s) 127
TasI AATT 4 cut(s) 330, 639, 791, 857
TauI GCSGC 1 cut(s) 51
TfiI GAWTC 1 cut(s) 167
Tru1I TTAA 2 cut(s) 204, 555
Tru9I TTAA 2 cut(s) 204, 555
TscAI CASTG 2 cut(s) 384, 608
TseFI GTSAC 4 cut(s) 14, 190, 605, 811
TseI GCWGC 4 cut(s) 30, 237, 490, 527
Tsp45I GTSAC 4 cut(s) 14, 190, 605, 811
TspDTI ATGAA 2 cut(s) 332, 339
TspGWI ACGGA 1 cut(s) 102
TspRI CASTG 2 cut(s) 384, 608
VpaK11BI GGWCC 1 cut(s) 458
XagI CCTNNNNNAGG 1 cut(s) 295
XapI RAATTY 2 cut(s) 639, 791
XceI RCATGY 1 cut(s) 740
XcmI CCANNNNNNNNNTGG 1 cut(s) 832
XmiI GTMKAC 2 cut(s) 510, 583
XspI CTAG 2 cut(s) 260, 264
ZraI GACGTC 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.