Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001014

Physical Location & Seq

Genomic Coordinates Forward (+)

68461846 .. 68467191

Gene Structure 5346 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020758

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGTCGCCGGACTGCGACGTCTGCACCTGCTGCGCCTGCCAGAATGGCGGCTCCAACGGTGATCACGCCGAAGATCTGGTCAAATACGTTCCTGTGCTGTCGAGCGATTCCGAGAAGCTACGGCGGGTCGTGACTGCTTCGATTAAGGGTTTCACCATCGGCGCCGGCCTCAAAGGCGGCCTCGCCGTCTTCGCCATCCTAGCTAGACTCAGAAAGAGAAAGCTCTTAGCCTCTCTCAGGACTGAGGGTGCGATTACGAATAATGAAGCGATTGTTACTGCTTTGAAGGAGACCTTGAGATATGGTCTGTTTCTTGGGACTTTTGCAGGCACATTTGTTTCAGTGGATGAGATTATTGCTTCTTTGGGAGGCCACCGAAGGCATTTCAGGACAGCAAAGTGGAGGGCTTTGTTAGCAGGGCTTATAGCAGGACCGTCTATGCTTCTTACCGGGCATAACACGCAGCATACGAGCTTGGCCGTATACATACTTATGCGTGCTGCCGTGTTGGCCACGCGCTGTGGGATTAAAAGCAAACGAACTATTGATGTCCTGGCATCAAGGCTTTACTTCTATTACTCTCTTAGCTATGAATATACTGGTGATCTCGCAGAAATTAGAGGAAGTGCACCATCATATGGGAACTCTGTAGTTGGGTGGGATGTGAGCTATGGAGCTGAATTTGTTCCTGTTCCTGACTCTATACTAATCATTCAAACAGCCACAAAGATGACTCCATCTGATGAACCATTAAAAGGGATTTCACAGTTTGTTGGAGCTTCAACAGGAACTTGGAATCTTAAAATCCCTGTCAAAGACACTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TMEM135_C_rich

Protein Analysis

276

Amino Acids

29.57

Weight (kDa)

9.28

Isoelectric Point (pI)

32.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_PSMD3_N	PF25573	170 - 208	2.6e-08	PSMD3-like, N-terminal TPR repeats
GOLD_PATL1_C	PF25099	216 - 251	4.6e-06	Patellin-1-like, C-terminal GOLD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34630 AT1G34630 AT1G34630 AT1G34630 AT1G34630
fragaria_vesca	FvH4_5g37331 FvH4_5g37331
malus_domestica	MD08G1182800.v1.1
prunus_persica	Prupe.1G517000_v2.0.a1 Prupe.1G517000_v2.0.a1
pyrus_communis	pycom08g15660
rosa_chinensis	RchiOBHm_Chr3g0470741 RchiOBHm_Chr4g0408951 RchiOBHm_Chr7g0238981
rosa_laevigata	RLG00000000793 RLG00000007867 RLG00000014356 RLG00000015234 RLG00000016579 RLG00000020758
rosa_multiflora	Rmu_co8298683.1_g000001 Rmu_sc0002152.1_g000014 Rmu_sc0004132.1_g000004 Rmu_sc0004879.1_g000005 Rmu_sc0005866.1_g000014 Rmu_sc0010178.1_g000001 Rmu_sc0029797.1_g000001 Rmu_sc0032697.1_g000001 Rmu_sc0034117.1_g000001 Rmu_ssc0000233.1_g000066
rosa_roxburghii	Rroxscaffold_3G00221410 Rroxscaffold_3G00221420
rosa_rugosa	Rorug03G0157600 Rorug05G0148200 Rorug05G0232900 Rorug05G0238700 Rorug07G0324200.1
rosa_samantha	Rh1BG208000 Rh1DG234700 Rh2AG003700 Rh2AG216800 Rh2DG222500 Rh3AG161900 Rh3AG329400 Rh3BG186700 Rh3CG176900 Rh3DG308000 Rh4AG125400 Rh4AG152700 Rh4BG154900 Rh4CG133600 Rh4DG112900 Rh5AG299600 Rh7AG465300 Rh7AG479200 Rh7BG451800 Rh7CG251000 Rh7CG496300 Rh7DG343400 Rh7DG463900
rosa_wichuraiana	Rw7G040000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	35
AasI	GACNNNNNNGTC	1 cut(s)	17
AatII	GACGTC	1 cut(s)	21
Acc36I	ACCTGC	1 cut(s)	35
AccB1I	GGYRCC	1 cut(s)	161
AccB7I	CCANNNNNTGG	1 cut(s)	638
AccI	GTMKAC	1 cut(s)	483
AccII	CGCG	1 cut(s)	517
AciI	CCGC	3 cut(s)	48, 124, 177
AcoI	YGGCCR	2 cut(s)	477, 510
AcsI	RAATTY	1 cut(s)	680
AcyI	GRCGYC	2 cut(s)	18, 162
AdeI	CACNNNGTG	1 cut(s)	825
AfiI	CCNNNNNNNGG	3 cut(s)	237, 638, 755
AgsI	TTSAA	3 cut(s)	286, 716, 783
AjnI	CCWGG	1 cut(s)	552
AluBI	AGCT	8 cut(s)	118, 203, 223, 474, 588, 669, 677, 779
AluI	AGCT	8 cut(s)	118, 203, 223, 474, 588, 669, 677, 779
Alw21I	GWGCWC	1 cut(s)	631
Alw26I	GTCTC	1 cut(s)	284
Alw44I	GTGCAC	1 cut(s)	627
AoxI	GGCC	5 cut(s)	166, 178, 370, 477, 510
ApaLI	GTGCAC	1 cut(s)	627
ApeKI	GCWGC	3 cut(s)	30, 463, 500
ApoI	RAATTY	1 cut(s)	680
ArsI	GACNNNNNNTTYG	2 cut(s)	63, 95
Asp700I	GAANNNNTTC	1 cut(s)	684
AspLEI	GCGC	3 cut(s)	35, 164, 519
AspS9I	GGNCC	1 cut(s)	431
AsuC2I	CCSGG	1 cut(s)	451
AsuHPI	GGTGA	3 cut(s)	71, 145, 614
AvaII	GGWCC	1 cut(s)	431
BaeGI	GKGCMC	1 cut(s)	631
BalI	TGGCCA	1 cut(s)	512
BanI	GGYRCC	1 cut(s)	161
BbsI	GAAGAC	1 cut(s)	181
Bbv12I	GWGCWC	1 cut(s)	631
BbvI	GCAGC	3 cut(s)	17, 475, 487
BccI	CCATC	4 cut(s)	164, 203, 640, 745
BceAI	ACGGC	4 cut(s)	137, 170, 464, 488
BciT130I	CCWGG	1 cut(s)	554
BclI	TGATCA	1 cut(s)	61
BcnI	CCSGG	1 cut(s)	451
BcoDI	GTCTC	1 cut(s)	284
BfaI	CTAG	2 cut(s)	200, 204
BfmI	CTRYAG	1 cut(s)	648
BfoI	RGCGCY	1 cut(s)	165
BfuAI	ACCTGC	1 cut(s)	35
BglI	GCCNNNNNGGC	3 cut(s)	45, 174, 509
BglII	AGATCT	1 cut(s)	73
BisI	GCNGC	5 cut(s)	31, 49, 178, 464, 501
BlsI	GCNGC	5 cut(s)	32, 50, 179, 465, 502
Bme1390I	CCNGG	2 cut(s)	451, 554
Bme18I	GGWCC	1 cut(s)	431
BmgT120I	GGNCC	1 cut(s)	431
BmiI	GGNNCC	2 cut(s)	52, 163
BmrFI	CCNGG	2 cut(s)	451, 554
BmsI	GCATC	1 cut(s)	566
BpiI	GAAGAC	1 cut(s)	181
BpuEI	CTTGAG	1 cut(s)	316
BpuMI	CCSGG	1 cut(s)	451
BsaHI	GRCGYC	2 cut(s)	18, 162
BsaI	GGTCTC	1 cut(s)	284
Bsc4I	CCNNNNNNNGG	3 cut(s)	237, 638, 755
Bse118I	RCCGGY	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	604
BseBI	CCWGG	1 cut(s)	554
BseGI	GGATG	3 cut(s)	195, 352, 667
BseLI	CCNNNNNNNGG	3 cut(s)	237, 638, 755
BseMII	CTCAG	3 cut(s)	223, 234, 250
BseNI	ACTGG	1 cut(s)	604
BseSI	GKGCMC	1 cut(s)	631
BseXI	GCAGC	3 cut(s)	17, 475, 487
BsgI	GTGCAG	1 cut(s)	7
Bsh1236I	CGCG	1 cut(s)	517
BshFI	GGCC	5 cut(s)	168, 180, 372, 479, 512
BshNI	GGYRCC	1 cut(s)	161
BsiHKAI	GWGCWC	1 cut(s)	631
BsiSI	CCGG	3 cut(s)	8, 165, 450
BslFI	GGGAC	1 cut(s)	331
BslI	CCNNNNNNNGG	3 cut(s)	237, 638, 755
BsmAI	GTCTC	1 cut(s)	284
BsmFI	GGGAC	1 cut(s)	331
BsnI	GGCC	5 cut(s)	168, 180, 372, 479, 512
Bso31I	GGTCTC	1 cut(s)	284
Bsp1286I	GDGCHC	1 cut(s)	631
Bsp143I	GATC	3 cut(s)	61, 73, 604
BspACI	CCGC	3 cut(s)	48, 124, 177
BspANI	GGCC	5 cut(s)	168, 180, 372, 479, 512
BspCNI	CTCAG	3 cut(s)	222, 235, 249
BspFNI	CGCG	1 cut(s)	517
BspLI	GGNNCC	2 cut(s)	52, 163
BspMI	ACCTGC	1 cut(s)	35
BspT107I	GGYRCC	1 cut(s)	161
BspTNI	GGTCTC	1 cut(s)	284
BsrFI	RCCGGY	1 cut(s)	164
BsrI	ACTGG	1 cut(s)	604
BssAI	RCCGGY	1 cut(s)	164
BssMI	GATC	3 cut(s)	61, 73, 604
BssNAI	GTATAC	1 cut(s)	484
BssNI	GRCGYC	2 cut(s)	18, 162
Bst1107I	GTATAC	1 cut(s)	484
Bst2UI	CCWGG	1 cut(s)	554
Bst4CI	ACNGT	3 cut(s)	59, 435, 768
BstACI	GRCGYC	2 cut(s)	18, 162
BstAPI	GCANNNNNTGC	1 cut(s)	30
BstC8I	GCNNGC	4 cut(s)	37, 166, 328, 498
BstDEI	CTNAG	6 cut(s)	209, 226, 236, 243, 584, 822
BstENI	CCTNNNNNAGG	1 cut(s)	235
BstF5I	GGATG	3 cut(s)	195, 352, 667
BstFNI	CGCG	1 cut(s)	517
BstH2I	RGCGCY	1 cut(s)	165
BstHHI	GCGC	3 cut(s)	35, 164, 519
BstKTI	GATC	3 cut(s)	64, 76, 607
BstMAI	GTCTC	1 cut(s)	284
BstMBI	GATC	3 cut(s)	61, 73, 604
BstNI	CCWGG	1 cut(s)	554
BstSCI	CCNGG	2 cut(s)	449, 552
BstSFI	CTRYAG	1 cut(s)	648
BstSLI	GKGCMC	1 cut(s)	631
BstUI	CGCG	1 cut(s)	517
BstV1I	GCAGC	3 cut(s)	17, 475, 487
BstV2I	GAAGAC	1 cut(s)	181
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
BstZ17I	GTATAC	1 cut(s)	484
BsuRI	GGCC	5 cut(s)	168, 180, 372, 479, 512
BtsCI	GGATG	3 cut(s)	195, 352, 667
BtsIMutI	CAGTG	1 cut(s)	348
BveI	ACCTGC	1 cut(s)	35
Cac8I	GCNNGC	4 cut(s)	37, 166, 328, 498
CfoI	GCGC	3 cut(s)	35, 164, 519
Cfr10I	RCCGGY	1 cut(s)	164
Cfr13I	GGNCC	1 cut(s)	431
DdeI	CTNAG	6 cut(s)	209, 226, 236, 243, 584, 822
DinI	GGCGCC	1 cut(s)	163
DpnI	GATC	3 cut(s)	63, 75, 606
DpnII	GATC	3 cut(s)	61, 73, 604
DraIII	CACNNNGTG	1 cut(s)	825
DrdI	GACNNNNNNGTC	1 cut(s)	17
DseDI	GACNNNNNNGTC	1 cut(s)	17
EaeI	YGGCCR	2 cut(s)	477, 510
Eco31I	GGTCTC	1 cut(s)	284
Eco47I	GGWCC	1 cut(s)	431
EcoNI	CCTNNNNNAGG	1 cut(s)	235
EcoRII	CCWGG	1 cut(s)	552
EgeI	GGCGCC	1 cut(s)	163
EheI	GGCGCC	1 cut(s)	163
FalI	AAGNNNNNCTT	2 cut(s)	278, 310
FaqI	GGGAC	1 cut(s)	331
FauI	CCCGC	1 cut(s)	117
FauNDI	CATATG	1 cut(s)	637
FbaI	TGATCA	1 cut(s)	61
FblI	GTMKAC	1 cut(s)	483
Fnu4HI	GCNGC	5 cut(s)	31, 49, 178, 464, 501
FokI	GGATG	3 cut(s)	182, 359, 674
Fsp4HI	GCNGC	5 cut(s)	31, 49, 178, 464, 501
FspBI	CTAG	2 cut(s)	200, 204
GlaI	GCGC	3 cut(s)	34, 163, 518
GluI	GCNGC	5 cut(s)	31, 49, 178, 464, 501
HaeII	RGCGCY	1 cut(s)	165
HaeIII	GGCC	5 cut(s)	168, 180, 372, 479, 512
HapII	CCGG	3 cut(s)	8, 165, 450
HhaI	GCGC	3 cut(s)	35, 164, 519
Hin1I	GRCGYC	2 cut(s)	18, 162
Hin6I	GCGC	3 cut(s)	33, 162, 517
HinP1I	GCGC	3 cut(s)	33, 162, 517
HinfI	GANTC	5 cut(s)	107, 207, 698, 733, 796
HpaII	CCGG	3 cut(s)	8, 165, 450
HphI	GGTGA	3 cut(s)	71, 145, 614
Hpy166II	GTNNAC	2 cut(s)	484, 629
Hpy188I	TCNGA	3 cut(s)	112, 212, 742
Hpy188III	TCNNGA	4 cut(s)	130, 238, 388, 695
Hpy8I	GTNNAC	2 cut(s)	484, 629
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	2 cut(s)	280, 372
HpyCH4III	ACNGT	3 cut(s)	59, 435, 768
HpyCH4IV	ACGT	2 cut(s)	18, 87
HpyCH4V	TGCA	3 cut(s)	24, 326, 629
HpyF3I	CTNAG	6 cut(s)	209, 226, 236, 243, 584, 822
HpySE526I	ACGT	2 cut(s)	18, 87
Hsp92I	GRCGYC	2 cut(s)	18, 162
HspAI	GCGC	3 cut(s)	33, 162, 517
KasI	GGCGCC	1 cut(s)	161
KroI	GCCGGC	1 cut(s)	164
KroNI	GCCGGC	1 cut(s)	166
Ksp22I	TGATCA	1 cut(s)	61
Kzo9I	GATC	3 cut(s)	61, 73, 604
LmnI	GCTCC	3 cut(s)	56, 674, 776
Lsp1109I	GCAGC	3 cut(s)	17, 475, 487
LweI	GCATC	1 cut(s)	566
MaeI	CTAG	2 cut(s)	200, 204
MaeII	ACGT	2 cut(s)	18, 87
MaeIII	GTNAC	2 cut(s)	130, 274
MalI	GATC	3 cut(s)	63, 75, 606
MboI	GATC	3 cut(s)	61, 73, 604
MboII	GAAGA	2 cut(s)	83, 181
MflI	RGATCY	1 cut(s)	73
MhlI	GDGCHC	1 cut(s)	631
MlsI	TGGCCA	1 cut(s)	512
MluCI	AATT	2 cut(s)	615, 680
MluNI	TGGCCA	1 cut(s)	512
Mly113I	GGCGCC	1 cut(s)	162
MlyI	GAGTC	3 cut(s)	201, 692, 727
MmeI	TCCRAC	2 cut(s)	78, 754
MnlI	CCTC	7 cut(s)	179, 191, 238, 241, 362, 396, 614
Mox20I	TGGCCA	1 cut(s)	512
MroNI	GCCGGC	1 cut(s)	164
MroXI	GAANNNNTTC	1 cut(s)	684
MscI	TGGCCA	1 cut(s)	512
MseI	TTAA	4 cut(s)	144, 528, 752, 801
MslI	CAYNNNNRTG	2 cut(s)	491, 728
Msp20I	TGGCCA	1 cut(s)	512
MspI	CCGG	3 cut(s)	8, 165, 450
MspR9I	CCNGG	2 cut(s)	451, 554
MvaI	CCWGG	1 cut(s)	554
MvnI	CGCG	1 cut(s)	517
NaeI	GCCGGC	1 cut(s)	166
NarI	GGCGCC	1 cut(s)	162
NciI	CCSGG	1 cut(s)	451
NdeI	CATATG	1 cut(s)	637
NdeII	GATC	3 cut(s)	61, 73, 604
NgoMIV	GCCGGC	1 cut(s)	164
NlaIV	GGNNCC	2 cut(s)	52, 163
NmuCI	GTSAC	1 cut(s)	130
PaqCI	CACCTGC	1 cut(s)	35
PcsI	WCGNNNNNNNCGW	1 cut(s)	467
PdiI	GCCGGC	1 cut(s)	166
PdmI	GAANNNNTTC	1 cut(s)	684
PfeI	GAWTC	2 cut(s)	107, 796
PflMI	CCANNNNNTGG	1 cut(s)	638
PkrI	GCNGC	5 cut(s)	32, 50, 179, 465, 502
PleI	GAGTC	3 cut(s)	201, 692, 727
PluTI	GGCGCC	1 cut(s)	165
PpsI	GAGTC	3 cut(s)	201, 692, 727
Psp6I	CCWGG	1 cut(s)	552
PspGI	CCWGG	1 cut(s)	552
PspN4I	GGNNCC	2 cut(s)	52, 163
PspPI	GGNCC	1 cut(s)	431
PsuI	RGATCY	1 cut(s)	73
RseI	CAYNNNNRTG	2 cut(s)	491, 728
SaqAI	TTAA	4 cut(s)	144, 528, 752, 801
SatI	GCNGC	5 cut(s)	31, 49, 178, 464, 501
Sau3AI	GATC	3 cut(s)	61, 73, 604
Sau96I	GGNCC	1 cut(s)	431
SchI	GAGTC	3 cut(s)	201, 692, 727
ScrFI	CCNGG	2 cut(s)	451, 554
SduI	GDGCHC	1 cut(s)	631
SfaNI	GCATC	1 cut(s)	566
SfcI	CTRYAG	1 cut(s)	648
SfoI	GGCGCC	1 cut(s)	163
SinI	GGWCC	1 cut(s)	431
SmiMI	CAYNNNNRTG	2 cut(s)	491, 728
SmlI	CTYRAG	1 cut(s)	295
SmoI	CTYRAG	1 cut(s)	295
Sse9I	AATT	2 cut(s)	615, 680
SsiI	CCGC	3 cut(s)	48, 124, 177
SspDI	GGCGCC	1 cut(s)	161
SspMI	CTAG	2 cut(s)	200, 204
StyD4I	CCNGG	2 cut(s)	449, 552
TaaI	ACNGT	3 cut(s)	59, 435, 768
TaiI	ACGT	2 cut(s)	21, 90
TaqI	TCGA	2 cut(s)	101, 140
TasI	AATT	2 cut(s)	615, 680
TauI	GCSGC	2 cut(s)	51, 180
TfiI	GAWTC	2 cut(s)	107, 796
Tru1I	TTAA	4 cut(s)	144, 528, 752, 801
Tru9I	TTAA	4 cut(s)	144, 528, 752, 801
TscAI	CASTG	1 cut(s)	348
TseFI	GTSAC	1 cut(s)	130
TseI	GCWGC	3 cut(s)	30, 463, 500
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	3 cut(s)	279, 606, 759
TspRI	CASTG	1 cut(s)	348
Van91I	CCANNNNNTGG	1 cut(s)	638
VneI	GTGCAC	1 cut(s)	627
VpaK11BI	GGWCC	1 cut(s)	431
XagI	CCTNNNNNAGG	1 cut(s)	235
XapI	RAATTY	1 cut(s)	680
XmiI	GTMKAC	1 cut(s)	483
XmnI	GAANNNNTTC	1 cut(s)	684
XspI	CTAG	2 cut(s)	200, 204
ZraI	GACGTC	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.