Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001014

Physical Location & Seq

Genomic Coordinates Reverse (-)

21433785 .. 21435230

Gene Structure 1446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG222500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGACTGCTTCGATTAAGGGTTTTACCATCGGCGCTGGCCTCAAAGGCGGCCTCGCCGTCTTCTCCATCCTAGCTAGACTCAAAAAGAGAAAGCTCTTAGCCTCTCTCAGGACTGAGGGTGCGATTACGAATGAAGCAATTGTTACTGTTTTGAAGGAGACCTTGAGATGTGGTCTGTTTCTTGGGACTTTTGCAGGCACATTTGTTTCAGTGGATGAGATTATTGCTTCTTTGGAAGGCCACCGTAGGCATGTTCCTTGTTCTTTTATATTCAGCTTCGCATGGACAGCTAAGTGGAGGGCTTTGTTAGCAGGGCTTATAGCAGGACCGTCTATGCTTCTTACCGGGCATAACACGCATCATACGAGCTTGGCCGTATACATACTTATGCGTGCTGCCGTGTTAGCCACGCGTTATGGGATTAAAAGCAAACGGTTTGGTCGTGTTTGTAGACCTCTCACTTGGAAGCATGGTGACATTTTCCTTATGTGTCTCTCCTCTTCGCAAATTCTGTGTTGTAACTGCATTGCTCCGGTGGCCTACAGCTCTGCAAGGGTGAGTATCAGAAAATTGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TMEM135_C_rich

Protein Analysis

192

Amino Acids

20.88

Weight (kDa)

10.27

Isoelectric Point (pI)

23.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34630 AT1G34630 AT1G34630 AT1G34630 AT1G34630
fragaria_vesca	FvH4_5g37331 FvH4_5g37331
malus_domestica	MD08G1182800.v1.1
prunus_persica	Prupe.1G517000_v2.0.a1 Prupe.1G517000_v2.0.a1
pyrus_communis	pycom08g15660
rosa_chinensis	RchiOBHm_Chr3g0470741 RchiOBHm_Chr4g0408951 RchiOBHm_Chr7g0238981
rosa_laevigata	RLG00000000793 RLG00000007867 RLG00000014356 RLG00000015234 RLG00000016579 RLG00000020758
rosa_multiflora	Rmu_co8298683.1_g000001 Rmu_sc0002152.1_g000014 Rmu_sc0004132.1_g000004 Rmu_sc0004879.1_g000005 Rmu_sc0005866.1_g000014 Rmu_sc0010178.1_g000001 Rmu_sc0029797.1_g000001 Rmu_sc0032697.1_g000001 Rmu_sc0034117.1_g000001 Rmu_ssc0000233.1_g000066
rosa_roxburghii	Rroxscaffold_3G00221410 Rroxscaffold_3G00221420
rosa_rugosa	Rorug03G0157600 Rorug05G0148200 Rorug05G0232900 Rorug05G0238700 Rorug07G0324200.1
rosa_samantha	Rh1BG208000 Rh1DG234700 Rh2AG003700 Rh2AG216800 Rh2DG222500 Rh3AG161900 Rh3AG329400 Rh3BG186700 Rh3CG176900 Rh3DG308000 Rh4AG125400 Rh4AG152700 Rh4BG154900 Rh4CG133600 Rh4DG112900 Rh5AG299600 Rh7AG465300 Rh7AG479200 Rh7BG451800 Rh7CG251000 Rh7CG496300 Rh7DG343400 Rh7DG463900
rosa_wichuraiana	Rw7G040000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	378, 451
AccII	CGCG	1 cut(s)	412
AciI	CCGC	1 cut(s)	48
AcoI	YGGCCR	1 cut(s)	372
AcsI	RAATTY	1 cut(s)	507
AfiI	CCNNNNNNNGG	1 cut(s)	108
AflIII	ACRYGT	1 cut(s)	410
AgsI	TTSAA	1 cut(s)	154
AluBI	AGCT	6 cut(s)	74, 94, 276, 290, 369, 546
AluI	AGCT	6 cut(s)	74, 94, 276, 290, 369, 546
Alw26I	GTCTC	2 cut(s)	152, 497
AoxI	GGCC	5 cut(s)	37, 49, 238, 372, 537
ApeKI	GCWGC	1 cut(s)	395
ApoI	RAATTY	1 cut(s)	507
AspLEI	GCGC	1 cut(s)	35
AspS9I	GGNCC	1 cut(s)	326
AsuC2I	CCSGG	1 cut(s)	346
AsuHPI	GGTGA	2 cut(s)	485, 568
AvaII	GGWCC	1 cut(s)	326
BbsI	GAAGAC	1 cut(s)	52
BbvI	GCAGC	1 cut(s)	382
BccI	CCATC	2 cut(s)	35, 74
BceAI	ACGGC	3 cut(s)	41, 359, 383
BcnI	CCSGG	1 cut(s)	346
BcoDI	GTCTC	2 cut(s)	152, 497
BfaI	CTAG	3 cut(s)	71, 75, 577
BfmI	CTRYAG	1 cut(s)	541
BfoI	RGCGCY	1 cut(s)	36
BglI	GCCNNNNNGGC	1 cut(s)	45
BisI	GCNGC	2 cut(s)	49, 396
BlsI	GCNGC	2 cut(s)	50, 397
Bme1390I	CCNGG	1 cut(s)	346
Bme18I	GGWCC	1 cut(s)	326
BmgT120I	GGNCC	1 cut(s)	326
BmrFI	CCNGG	1 cut(s)	346
BmsI	GCATC	1 cut(s)	367
BpiI	GAAGAC	1 cut(s)	52
BpuEI	CTTGAG	1 cut(s)	184
BpuMI	CCSGG	1 cut(s)	346
BsaI	GGTCTC	1 cut(s)	152
BsaWI	WCCGGW	1 cut(s)	532
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
Bse3DI	GCAATG	1 cut(s)	525
BseGI	GGATG	2 cut(s)	66, 220
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseMI	GCAATG	1 cut(s)	525
BseMII	CTCAG	2 cut(s)	105, 121
BseRI	GAGGAG	1 cut(s)	487
BseXI	GCAGC	1 cut(s)	382
Bsh1236I	CGCG	1 cut(s)	412
BshFI	GGCC	5 cut(s)	39, 51, 240, 374, 539
BsiSI	CCGG	2 cut(s)	345, 533
BslFI	GGGAC	1 cut(s)	199
BslI	CCNNNNNNNGG	1 cut(s)	108
BsmAI	GTCTC	2 cut(s)	152, 497
BsmFI	GGGAC	1 cut(s)	199
BsnI	GGCC	5 cut(s)	39, 51, 240, 374, 539
Bso31I	GGTCTC	1 cut(s)	152
BspACI	CCGC	1 cut(s)	48
BspANI	GGCC	5 cut(s)	39, 51, 240, 374, 539
BspCNI	CTCAG	2 cut(s)	106, 120
BspFNI	CGCG	1 cut(s)	412
BspTNI	GGTCTC	1 cut(s)	152
BsrDI	GCAATG	1 cut(s)	525
BssNAI	GTATAC	1 cut(s)	379
Bst1107I	GTATAC	1 cut(s)	379
Bst4CI	ACNGT	4 cut(s)	148, 245, 330, 435
Bst6I	CTCTTC	1 cut(s)	505
BstC8I	GCNNGC	3 cut(s)	37, 196, 393
BstDEI	CTNAG	4 cut(s)	97, 107, 114, 291
BstENI	CCTNNNNNAGG	1 cut(s)	106
BstF5I	GGATG	2 cut(s)	66, 220
BstFNI	CGCG	1 cut(s)	412
BstH2I	RGCGCY	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	35
BstMAI	GTCTC	2 cut(s)	152, 497
BstMWI	GCNNNNNNNGC	6 cut(s)	45, 287, 308, 355, 404, 536
BstNSI	RCATGY	1 cut(s)	254
BstSCI	CCNGG	1 cut(s)	344
BstSFI	CTRYAG	1 cut(s)	541
BstUI	CGCG	1 cut(s)	412
BstV1I	GCAGC	1 cut(s)	382
BstV2I	GAAGAC	1 cut(s)	52
BstZ17I	GTATAC	1 cut(s)	379
BsuRI	GGCC	5 cut(s)	39, 51, 240, 374, 539
BtsCI	GGATG	2 cut(s)	66, 220
BtsIMutI	CAGTG	1 cut(s)	216
Cac8I	GCNNGC	3 cut(s)	37, 196, 393
CfoI	GCGC	1 cut(s)	35
Cfr13I	GGNCC	1 cut(s)	326
CviAII	CATG	3 cut(s)	251, 282, 470
DdeI	CTNAG	4 cut(s)	97, 107, 114, 291
EaeI	YGGCCR	1 cut(s)	372
Eam1104I	CTCTTC	1 cut(s)	505
EarI	CTCTTC	1 cut(s)	505
Eco31I	GGTCTC	1 cut(s)	152
Eco47I	GGWCC	1 cut(s)	326
EcoNI	CCTNNNNNAGG	1 cut(s)	106
FaeI	CATG	3 cut(s)	254, 285, 473
FalI	AAGNNNNNCTT	2 cut(s)	146, 178
FaqI	GGGAC	1 cut(s)	199
FatI	CATG	3 cut(s)	250, 281, 469
FblI	GTMKAC	2 cut(s)	378, 451
Fnu4HI	GCNGC	2 cut(s)	49, 396
FokI	GGATG	2 cut(s)	53, 227
Fsp4HI	GCNGC	2 cut(s)	49, 396
FspBI	CTAG	3 cut(s)	71, 75, 577
GlaI	GCGC	1 cut(s)	34
GluI	GCNGC	2 cut(s)	49, 396
HaeII	RGCGCY	1 cut(s)	36
HaeIII	GGCC	5 cut(s)	39, 51, 240, 374, 539
HapII	CCGG	2 cut(s)	345, 533
HhaI	GCGC	1 cut(s)	35
Hin1II	CATG	3 cut(s)	254, 285, 473
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HinfI	GANTC	1 cut(s)	78
HpaII	CCGG	2 cut(s)	345, 533
HphI	GGTGA	2 cut(s)	485, 568
Hpy166II	GTNNAC	2 cut(s)	379, 452
Hpy188I	TCNGA	1 cut(s)	566
Hpy188III	TCNNGA	1 cut(s)	109
Hpy8I	GTNNAC	2 cut(s)	379, 452
HpyAV	CCTTC	2 cut(s)	148, 230
HpyCH4III	ACNGT	4 cut(s)	148, 245, 330, 435
HpyCH4V	TGCA	3 cut(s)	194, 525, 551
HpyF10VI	GCNNNNNNNGC	6 cut(s)	45, 287, 308, 355, 404, 536
HpyF3I	CTNAG	4 cut(s)	97, 107, 114, 291
Hsp92II	CATG	3 cut(s)	254, 285, 473
HspAI	GCGC	1 cut(s)	33
LmnI	GCTCC	1 cut(s)	535
LpnPI	CCDG	7 cut(s)	21, 94, 180, 297, 309, 358, 546
Lsp1109I	GCAGC	1 cut(s)	382
LweI	GCATC	1 cut(s)	367
MaeI	CTAG	3 cut(s)	71, 75, 577
MaeIII	GTNAC	3 cut(s)	142, 473, 518
MboII	GAAGA	2 cut(s)	52, 492
MfeI	CAATTG	1 cut(s)	138
MluCI	AATT	3 cut(s)	138, 507, 569
MluI	ACGCGT	1 cut(s)	410
MlyI	GAGTC	1 cut(s)	72
MnlI	CCTC	7 cut(s)	50, 62, 109, 112, 291, 465, 508
MseI	TTAA	2 cut(s)	15, 423
MslI	CAYNNNNRTG	1 cut(s)	386
MspI	CCGG	2 cut(s)	345, 533
MspR9I	CCNGG	1 cut(s)	346
MunI	CAATTG	1 cut(s)	138
MvnI	CGCG	1 cut(s)	412
MwoI	GCNNNNNNNGC	6 cut(s)	45, 287, 308, 355, 404, 536
NciI	CCSGG	1 cut(s)	346
NlaIII	CATG	3 cut(s)	254, 285, 473
NmuCI	GTSAC	1 cut(s)	473
NspI	RCATGY	1 cut(s)	254
PcsI	WCGNNNNNNNCGW	2 cut(s)	362, 439
PkrI	GCNGC	2 cut(s)	50, 397
PleI	GAGTC	1 cut(s)	72
PpsI	GAGTC	1 cut(s)	72
PspPI	GGNCC	1 cut(s)	326
RseI	CAYNNNNRTG	1 cut(s)	386
SaqAI	TTAA	2 cut(s)	15, 423
SatI	GCNGC	2 cut(s)	49, 396
Sau96I	GGNCC	1 cut(s)	326
SchI	GAGTC	1 cut(s)	72
ScrFI	CCNGG	1 cut(s)	346
SetI	ASST	8 cut(s)	76, 96, 164, 278, 292, 371, 457, 548
SfaNI	GCATC	1 cut(s)	367
SfcI	CTRYAG	1 cut(s)	541
SinI	GGWCC	1 cut(s)	326
SmiMI	CAYNNNNRTG	1 cut(s)	386
SmlI	CTYRAG	1 cut(s)	163
SmoI	CTYRAG	1 cut(s)	163
Sse9I	AATT	3 cut(s)	138, 507, 569
SsiI	CCGC	1 cut(s)	48
SspMI	CTAG	3 cut(s)	71, 75, 577
StyD4I	CCNGG	1 cut(s)	344
TaaI	ACNGT	4 cut(s)	148, 245, 330, 435
TaqI	TCGA	1 cut(s)	11
TasI	AATT	3 cut(s)	138, 507, 569
TauI	GCSGC	1 cut(s)	51
Tru1I	TTAA	2 cut(s)	15, 423
Tru9I	TTAA	2 cut(s)	15, 423
TscAI	CASTG	1 cut(s)	216
TseFI	GTSAC	1 cut(s)	473
TseI	GCWGC	1 cut(s)	395
Tsp45I	GTSAC	1 cut(s)	473
TspDTI	ATGAA	1 cut(s)	147
TspRI	CASTG	1 cut(s)	216
VpaK11BI	GGWCC	1 cut(s)	326
XagI	CCTNNNNNAGG	1 cut(s)	106
XapI	RAATTY	1 cut(s)	507
XceI	RCATGY	1 cut(s)	254
XmiI	GTMKAC	2 cut(s)	378, 451
XspI	CTAG	3 cut(s)	71, 75, 577

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.