Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0001014

Physical Location & Seq

Genomic Coordinates Forward (+)

47072449 .. 47073881

Gene Structure 1433 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG329400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGTCGCCGGACTGCGACGTCTGCACCTGTTGCGCCTGCCAGAATGGCGGCTCCAACTGTGATCACGCAGAAGATCTGGTGTGCGCGCATTACTGGAAATCCGATCCCTCTCCGTCGTCGTTTTGCTATTCCTCTTCGGTCAAATACGTTCCTGTGCCGTCGAACGATTCTGAGAAGCTACGGCGGGTCGTGACTGCTTCTATTAAGGGTTTCACCATCGGCGCCGGCCTCAAAGGCGGCCTCGCCGTCTTCTCCATCCTAGGTAGACTCAGAAAGAGAAAGCTCTTAGCCTCTCTCAGGACTGAGGGTGCGATTATGAATAATGAAGCAATTGTTGCTGTTTTGAAGGAGACCTTGAGATGTGGTCTGTATATTTCTGCTGAGCATGTTCCTGTAAAATATGGAGGTTTGAGTGTGGATTACTGTGAGTGCAACCCAGAATTCACCATTGCTGATCCAGTCACTAAAGTAACCATCAAACTTGGGACAAAGAAGACTCAGGAAATTATAATTTATGAGTCCACGACTTGGGATCTGTTTGGCAATACTTTCAGGCTTTTAGTGATGGTAAAAAAAGCTTTCAAATACTCTTCAGAGCTTTTTGGAGTGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TMEM135_C_rich

Protein Analysis

204

Amino Acids

22.31

Weight (kDa)

8.44

Isoelectric Point (pI)

43.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34630 AT1G34630 AT1G34630 AT1G34630 AT1G34630
fragaria_vesca	FvH4_5g37331 FvH4_5g37331
malus_domestica	MD08G1182800.v1.1
prunus_persica	Prupe.1G517000_v2.0.a1 Prupe.1G517000_v2.0.a1
pyrus_communis	pycom08g15660
rosa_chinensis	RchiOBHm_Chr3g0470741 RchiOBHm_Chr4g0408951 RchiOBHm_Chr7g0238981
rosa_laevigata	RLG00000000793 RLG00000007867 RLG00000014356 RLG00000015234 RLG00000016579 RLG00000020758
rosa_multiflora	Rmu_co8298683.1_g000001 Rmu_sc0002152.1_g000014 Rmu_sc0004132.1_g000004 Rmu_sc0004879.1_g000005 Rmu_sc0005866.1_g000014 Rmu_sc0010178.1_g000001 Rmu_sc0029797.1_g000001 Rmu_sc0032697.1_g000001 Rmu_sc0034117.1_g000001 Rmu_ssc0000233.1_g000066
rosa_roxburghii	Rroxscaffold_3G00221410 Rroxscaffold_3G00221420
rosa_rugosa	Rorug03G0157600 Rorug05G0148200 Rorug05G0232900 Rorug05G0238700 Rorug07G0324200.1
rosa_samantha	Rh1BG208000 Rh1DG234700 Rh2AG003700 Rh2AG216800 Rh2DG222500 Rh3AG161900 Rh3AG329400 Rh3BG186700 Rh3CG176900 Rh3DG308000 Rh4AG125400 Rh4AG152700 Rh4BG154900 Rh4CG133600 Rh4DG112900 Rh5AG299600 Rh7AG465300 Rh7AG479200 Rh7BG451800 Rh7CG251000 Rh7CG496300 Rh7DG343400 Rh7DG463900
rosa_wichuraiana	Rw7G040000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	509
AasI	GACNNNNNNGTC	1 cut(s)	17
AatII	GACGTC	1 cut(s)	21
AccB1I	GGYRCC	1 cut(s)	221
AccB7I	CCANNNNNTGG	1 cut(s)	528
AccI	GTMKAC	1 cut(s)	265
AccII	CGCG	1 cut(s)	86
AciI	CCGC	3 cut(s)	48, 184, 237
AclWI	GGATC	3 cut(s)	98, 449, 540
AcsI	RAATTY	1 cut(s)	440
AcuI	CTGAAG	1 cut(s)	576
AcyI	GRCGYC	2 cut(s)	18, 222
AfiI	CCNNNNNNNGG	2 cut(s)	297, 528
AgsI	TTSAA	2 cut(s)	346, 583
AluBI	AGCT	4 cut(s)	178, 283, 578, 598
AluI	AGCT	4 cut(s)	178, 283, 578, 598
Alw26I	GTCTC	1 cut(s)	344
AlwI	GGATC	3 cut(s)	98, 449, 540
AoxI	GGCC	2 cut(s)	226, 238
ApoI	RAATTY	1 cut(s)	440
AspA2I	CCTAGG	1 cut(s)	259
AspLEI	GCGC	4 cut(s)	35, 86, 88, 224
AsuHPI	GGTGA	2 cut(s)	205, 436
AvrII	CCTAGG	1 cut(s)	259
BanI	GGYRCC	1 cut(s)	221
BbsI	GAAGAC	2 cut(s)	241, 500
BccI	CCATC	4 cut(s)	224, 263, 482, 559
BceAI	ACGGC	3 cut(s)	142, 197, 230
BclI	TGATCA	1 cut(s)	61
BcoDI	GTCTC	1 cut(s)	344
BfaI	CTAG	1 cut(s)	260
BfoI	RGCGCY	1 cut(s)	225
BglI	GCCNNNNNGGC	2 cut(s)	45, 234
BglII	AGATCT	1 cut(s)	73
BisI	GCNGC	2 cut(s)	49, 238
BlnI	CCTAGG	1 cut(s)	259
BlpI	GCTNAGC	1 cut(s)	381
BlsI	GCNGC	2 cut(s)	50, 239
BmiI	GGNNCC	2 cut(s)	52, 223
BpiI	GAAGAC	2 cut(s)	241, 500
Bpu1102I	GCTNAGC	1 cut(s)	381
BpuEI	CTTGAG	1 cut(s)	376
BsaHI	GRCGYC	2 cut(s)	18, 222
BsaI	GGTCTC	1 cut(s)	344
BsaJI	CCNNGG	1 cut(s)	259
Bsc4I	CCNNNNNNNGG	2 cut(s)	297, 528
Bse118I	RCCGGY	1 cut(s)	224
Bse1I	ACTGG	2 cut(s)	98, 458
Bse3DI	GCAATG	1 cut(s)	447
BseDI	CCNNGG	1 cut(s)	259
BseGI	GGATG	1 cut(s)	255
BseLI	CCNNNNNNNGG	2 cut(s)	297, 528
BseMI	GCAATG	1 cut(s)	447
BseMII	CTCAG	6 cut(s)	162, 283, 294, 310, 372, 512
BseNI	ACTGG	2 cut(s)	98, 458
BsePI	GCGCGC	1 cut(s)	84
BsgI	GTGCAG	1 cut(s)	7
Bsh1236I	CGCG	1 cut(s)	86
BshFI	GGCC	2 cut(s)	228, 240
BshNI	GGYRCC	1 cut(s)	221
BsiSI	CCGG	2 cut(s)	8, 225
BslFI	GGGAC	1 cut(s)	499
BslI	CCNNNNNNNGG	2 cut(s)	297, 528
BsmAI	GTCTC	1 cut(s)	344
BsmFI	GGGAC	1 cut(s)	499
BsnI	GGCC	2 cut(s)	228, 240
Bso31I	GGTCTC	1 cut(s)	344
Bsp143I	GATC	5 cut(s)	61, 73, 103, 454, 532
Bsp1720I	GCTNAGC	1 cut(s)	381
BspACI	CCGC	3 cut(s)	48, 184, 237
BspANI	GGCC	2 cut(s)	228, 240
BspCNI	CTCAG	6 cut(s)	163, 282, 295, 309, 373, 511
BspFNI	CGCG	1 cut(s)	86
BspLI	GGNNCC	2 cut(s)	52, 223
BspPI	GGATC	3 cut(s)	98, 449, 540
BspT107I	GGYRCC	1 cut(s)	221
BspTNI	GGTCTC	1 cut(s)	344
BsrDI	GCAATG	1 cut(s)	447
BsrFI	RCCGGY	1 cut(s)	224
BsrI	ACTGG	2 cut(s)	98, 458
BssAI	RCCGGY	1 cut(s)	224
BssECI	CCNNGG	1 cut(s)	259
BssHII	GCGCGC	1 cut(s)	84
BssMI	GATC	5 cut(s)	61, 73, 103, 454, 532
BssNI	GRCGYC	2 cut(s)	18, 222
BssT1I	CCWWGG	1 cut(s)	259
Bst4CI	ACNGT	2 cut(s)	59, 425
Bst6I	CTCTTC	2 cut(s)	139, 595
BstACI	GRCGYC	2 cut(s)	18, 222
BstAPI	GCANNNNNTGC	2 cut(s)	30, 335
BstC8I	GCNNGC	3 cut(s)	37, 86, 226
BstDEI	CTNAG	7 cut(s)	171, 269, 286, 296, 303, 381, 498
BstENI	CCTNNNNNAGG	1 cut(s)	295
BstF5I	GGATG	1 cut(s)	255
BstFNI	CGCG	1 cut(s)	86
BstH2I	RGCGCY	1 cut(s)	225
BstHHI	GCGC	4 cut(s)	35, 86, 88, 224
BstKTI	GATC	5 cut(s)	64, 76, 106, 457, 535
BstMAI	GTCTC	1 cut(s)	344
BstMBI	GATC	5 cut(s)	61, 73, 103, 454, 532
BstMWI	GCNNNNNNNGC	5 cut(s)	21, 30, 45, 234, 335
BstNSI	RCATGY	1 cut(s)	389
BstUI	CGCG	1 cut(s)	86
BstV2I	GAAGAC	2 cut(s)	241, 500
BstX2I	RGATCY	2 cut(s)	73, 532
BstYI	RGATCY	2 cut(s)	73, 532
BsuRI	GGCC	2 cut(s)	228, 240
BtsCI	GGATG	1 cut(s)	255
Cac8I	GCNNGC	3 cut(s)	37, 86, 226
CfoI	GCGC	4 cut(s)	35, 86, 88, 224
Cfr10I	RCCGGY	1 cut(s)	224
CviAII	CATG	1 cut(s)	386
CviJI	RGCY	9 cut(s)	51, 178, 228, 240, 283, 290, 556, 578, 598
CviKI_1	RGCY	9 cut(s)	51, 178, 228, 240, 283, 290, 556, 578, 598
DdeI	CTNAG	7 cut(s)	171, 269, 286, 296, 303, 381, 498
DinI	GGCGCC	1 cut(s)	223
DpnI	GATC	5 cut(s)	63, 75, 105, 456, 534
DpnII	GATC	5 cut(s)	61, 73, 103, 454, 532
DrdI	GACNNNNNNGTC	1 cut(s)	17
DseDI	GACNNNNNNGTC	1 cut(s)	17
Eam1104I	CTCTTC	2 cut(s)	139, 595
EarI	CTCTTC	2 cut(s)	139, 595
Eco130I	CCWWGG	1 cut(s)	259
Eco31I	GGTCTC	1 cut(s)	344
Eco57I	CTGAAG	1 cut(s)	576
EcoNI	CCTNNNNNAGG	1 cut(s)	295
EcoRI	GAATTC	1 cut(s)	440
EcoT14I	CCWWGG	1 cut(s)	259
EgeI	GGCGCC	1 cut(s)	223
EheI	GGCGCC	1 cut(s)	223
ErhI	CCWWGG	1 cut(s)	259
FaeI	CATG	1 cut(s)	389
FaiI	YATR	6 cut(s)	317, 372, 387, 402, 509, 516
FalI	AAGNNNNNCTT	2 cut(s)	338, 370
FaqI	GGGAC	1 cut(s)	499
FatI	CATG	1 cut(s)	385
FauI	CCCGC	1 cut(s)	177
FbaI	TGATCA	1 cut(s)	61
FblI	GTMKAC	1 cut(s)	265
Fnu4HI	GCNGC	2 cut(s)	49, 238
FokI	GGATG	1 cut(s)	242
Fsp4HI	GCNGC	2 cut(s)	49, 238
FspBI	CTAG	1 cut(s)	260
GlaI	GCGC	4 cut(s)	34, 85, 87, 223
GluI	GCNGC	2 cut(s)	49, 238
HaeII	RGCGCY	1 cut(s)	225
HaeIII	GGCC	2 cut(s)	228, 240
HapII	CCGG	2 cut(s)	8, 225
HhaI	GCGC	4 cut(s)	35, 86, 88, 224
Hin1I	GRCGYC	2 cut(s)	18, 222
Hin1II	CATG	1 cut(s)	389
Hin6I	GCGC	4 cut(s)	33, 84, 86, 222
HinP1I	GCGC	4 cut(s)	33, 84, 86, 222
HindIII	AAGCTT	1 cut(s)	576
HinfI	GANTC	4 cut(s)	167, 267, 496, 518
HpaII	CCGG	2 cut(s)	8, 225
HphI	GGTGA	2 cut(s)	205, 436
Hpy166II	GTNNAC	2 cut(s)	266, 522
Hpy188I	TCNGA	4 cut(s)	103, 172, 272, 595
Hpy188III	TCNNGA	3 cut(s)	190, 298, 500
Hpy8I	GTNNAC	2 cut(s)	266, 522
Hpy99I	CGWCG	4 cut(s)	20, 118, 121, 163
HpyAV	CCTTC	1 cut(s)	340
HpyCH4III	ACNGT	2 cut(s)	59, 425
HpyCH4IV	ACGT	2 cut(s)	18, 147
HpyCH4V	TGCA	2 cut(s)	24, 432
HpyF10VI	GCNNNNNNNGC	5 cut(s)	21, 30, 45, 234, 335
HpyF3I	CTNAG	7 cut(s)	171, 269, 286, 296, 303, 381, 498
HpySE526I	ACGT	2 cut(s)	18, 147
Hsp92I	GRCGYC	2 cut(s)	18, 222
Hsp92II	CATG	1 cut(s)	389
HspAI	GCGC	4 cut(s)	33, 84, 86, 222
KasI	GGCGCC	1 cut(s)	221
KroI	GCCGGC	1 cut(s)	224
KroNI	GCCGGC	1 cut(s)	226
Ksp22I	TGATCA	1 cut(s)	61
Kzo9I	GATC	5 cut(s)	61, 73, 103, 454, 532
LmnI	GCTCC	1 cut(s)	56
MaeI	CTAG	1 cut(s)	260
MaeII	ACGT	2 cut(s)	18, 147
MaeIII	GTNAC	3 cut(s)	190, 460, 469
MalI	GATC	5 cut(s)	63, 75, 105, 456, 534
MboI	GATC	5 cut(s)	61, 73, 103, 454, 532
MboII	GAAGA	5 cut(s)	83, 126, 241, 505, 582
MfeI	CAATTG	1 cut(s)	330
MflI	RGATCY	2 cut(s)	73, 532
MluCI	AATT	4 cut(s)	330, 440, 504, 510
Mly113I	GGCGCC	1 cut(s)	222
MlyI	GAGTC	3 cut(s)	261, 490, 527
MmeI	TCCRAC	1 cut(s)	78
MnlI	CCTC	7 cut(s)	118, 142, 239, 251, 298, 301, 398
MroNI	GCCGGC	1 cut(s)	224
MseI	TTAA	1 cut(s)	204
MspI	CCGG	2 cut(s)	8, 225
MunI	CAATTG	1 cut(s)	330
MvnI	CGCG	1 cut(s)	86
MwoI	GCNNNNNNNGC	5 cut(s)	21, 30, 45, 234, 335
NaeI	GCCGGC	1 cut(s)	226
NarI	GGCGCC	1 cut(s)	222
NdeII	GATC	5 cut(s)	61, 73, 103, 454, 532
NgoMIV	GCCGGC	1 cut(s)	224
NlaIII	CATG	1 cut(s)	389
NlaIV	GGNNCC	2 cut(s)	52, 223
NmuCI	GTSAC	2 cut(s)	190, 460
NspI	RCATGY	1 cut(s)	389
PauI	GCGCGC	1 cut(s)	84
PdiI	GCCGGC	1 cut(s)	226
PfeI	GAWTC	1 cut(s)	167
PflMI	CCANNNNNTGG	1 cut(s)	528
PkrI	GCNGC	2 cut(s)	50, 239
PleI	GAGTC	3 cut(s)	261, 490, 526
PluTI	GGCGCC	1 cut(s)	225
PpsI	GAGTC	3 cut(s)	261, 490, 526
PsiI	TTATAA	1 cut(s)	509
PspN4I	GGNNCC	2 cut(s)	52, 223
PsuI	RGATCY	2 cut(s)	73, 532
PteI	GCGCGC	1 cut(s)	84
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	2 cut(s)	49, 238
Sau3AI	GATC	5 cut(s)	61, 73, 103, 454, 532
SchI	GAGTC	3 cut(s)	261, 490, 527
SfoI	GGCGCC	1 cut(s)	223
SmlI	CTYRAG	1 cut(s)	355
SmoI	CTYRAG	1 cut(s)	355
Sse9I	AATT	4 cut(s)	330, 440, 504, 510
SsiI	CCGC	3 cut(s)	48, 184, 237
SspDI	GGCGCC	1 cut(s)	221
SspMI	CTAG	1 cut(s)	260
StyI	CCWWGG	1 cut(s)	259
TaaI	ACNGT	2 cut(s)	59, 425
TaiI	ACGT	2 cut(s)	21, 150
TaqI	TCGA	1 cut(s)	161
TaqII	GACCGA	1 cut(s)	127
TasI	AATT	4 cut(s)	330, 440, 504, 510
TauI	GCSGC	2 cut(s)	51, 240
TfiI	GAWTC	1 cut(s)	167
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TseFI	GTSAC	2 cut(s)	190, 460
Tsp45I	GTSAC	2 cut(s)	190, 460
TspDTI	ATGAA	2 cut(s)	332, 339
TspGWI	ACGGA	1 cut(s)	102
Van91I	CCANNNNNTGG	1 cut(s)	528
XagI	CCTNNNNNAGG	1 cut(s)	295
XapI	RAATTY	1 cut(s)	440
XceI	RCATGY	1 cut(s)	389
XmaJI	CCTAGG	1 cut(s)	259
XmiI	GTMKAC	1 cut(s)	265
XspI	CTAG	1 cut(s)	260
ZraI	GACGTC	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.