Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002152.1

Orthogroup ID

OG0001014

Physical Location & Seq

Genomic Coordinates Forward (+)

71101 .. 73953

Gene Structure 2853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002152.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

atggcggctccaacggtgatcacgccaaagatctggtgtgctcgcattacaggaaatctgatcccctcttcgtcgttttgctattcctcttcgctcaaatacgttcctgtgccgtcaagcgatttcgagaagctacagcgggtcgtgactgcttcgattaagggtttcaccatcggcgcggcctcgcagactgagggtgtgattacgaataatgaagcaattgttactattttgaaggagaccttgagatatggtcagtttcttgggacttttgcaggcacatttgttacagtggatgagattattgcttctttgggaggccaccgtaggcatgttccttgttcttttatattcagcttcacatggacaactaagtggagggctttgttagcagggcttatagcaggttcatctatgcttcttaccaggcataacacgcagcatacgagcttggccgtatacatacttatgcgtgggcatgctccaggatggcaagatgtgcagcctcatgatcctcaagttcaagatgcagccaaccatgttgtgaagagccttcaacaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TMEM135_C_rich

Protein Analysis

187

Amino Acids

20.44

Weight (kDa)

9.33

Isoelectric Point (pI)

33.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34630 AT1G34630 AT1G34630 AT1G34630 AT1G34630
fragaria_vesca	FvH4_5g37331 FvH4_5g37331
malus_domestica	MD08G1182800.v1.1
prunus_persica	Prupe.1G517000_v2.0.a1 Prupe.1G517000_v2.0.a1
pyrus_communis	pycom08g15660
rosa_chinensis	RchiOBHm_Chr3g0470741 RchiOBHm_Chr4g0408951 RchiOBHm_Chr7g0238981
rosa_laevigata	RLG00000000793 RLG00000007867 RLG00000014356 RLG00000015234 RLG00000016579 RLG00000020758
rosa_multiflora	Rmu_co8298683.1_g000001 Rmu_sc0002152.1_g000014 Rmu_sc0004132.1_g000004 Rmu_sc0004879.1_g000005 Rmu_sc0005866.1_g000014 Rmu_sc0010178.1_g000001 Rmu_sc0029797.1_g000001 Rmu_sc0032697.1_g000001 Rmu_sc0034117.1_g000001 Rmu_ssc0000233.1_g000066
rosa_roxburghii	Rroxscaffold_3G00221410 Rroxscaffold_3G00221420
rosa_rugosa	Rorug03G0157600 Rorug05G0148200 Rorug05G0232900 Rorug05G0238700 Rorug07G0324200.1
rosa_samantha	Rh1BG208000 Rh1DG234700 Rh2AG003700 Rh2AG216800 Rh2DG222500 Rh3AG161900 Rh3AG329400 Rh3BG186700 Rh3CG176900 Rh3DG308000 Rh4AG125400 Rh4AG152700 Rh4BG154900 Rh4CG133600 Rh4DG112900 Rh5AG299600 Rh7AG465300 Rh7AG479200 Rh7BG451800 Rh7CG251000 Rh7CG496300 Rh7DG343400 Rh7DG463900
rosa_wichuraiana	Rw7G040000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	395
AccI	GTMKAC	1 cut(s)	459
AccII	CGCG	1 cut(s)	179
AciI	CCGC	3 cut(s)	5, 139, 179
AclWI	GGATC	2 cut(s)	55, 506
AcoI	YGGCCR	1 cut(s)	453
AgsI	TTSAA	3 cut(s)	235, 524, 557
AjnI	CCWGG	2 cut(s)	425, 484
AluBI	AGCT	3 cut(s)	133, 357, 450
AluI	AGCT	3 cut(s)	133, 357, 450
Alw21I	GWGCWC	1 cut(s)	43
Alw26I	GTCTC	1 cut(s)	233
AlwI	GGATC	2 cut(s)	55, 506
AoxI	GGCC	3 cut(s)	180, 319, 453
ApeKI	GCWGC	3 cut(s)	439, 502, 530
AspLEI	GCGC	1 cut(s)	179
AsuHPI	GGTGA	2 cut(s)	28, 160
Bbv12I	GWGCWC	1 cut(s)	43
BbvI	GCAGC	3 cut(s)	451, 514, 542
BccI	CCATC	2 cut(s)	179, 483
BceAI	ACGGC	2 cut(s)	97, 440
BciT130I	CCWGG	2 cut(s)	427, 486
BclI	TGATCA	1 cut(s)	18
BcoDI	GTCTC	1 cut(s)	233
BfmI	CTRYAG	1 cut(s)	134
BfuAI	ACCTGC	1 cut(s)	395
BglII	AGATCT	1 cut(s)	30
BisI	GCNGC	5 cut(s)	6, 180, 440, 503, 531
BlsI	GCNGC	5 cut(s)	7, 181, 441, 504, 532
Bme1390I	CCNGG	2 cut(s)	427, 486
BmiI	GGNNCC	1 cut(s)	9
BmrFI	CCNGG	2 cut(s)	427, 486
BmsI	GCATC	1 cut(s)	517
BpmI	CTGGAG	1 cut(s)	468
BpuEI	CTTGAG	2 cut(s)	265, 501
BsaI	GGTCTC	1 cut(s)	233
BseBI	CCWGG	2 cut(s)	427, 486
BseGI	GGATG	2 cut(s)	301, 494
BseMII	CTCAG	1 cut(s)	183
BseXI	GCAGC	3 cut(s)	451, 514, 542
BsgI	GTGCAG	1 cut(s)	521
Bsh1236I	CGCG	1 cut(s)	179
BshFI	GGCC	3 cut(s)	182, 321, 455
BsiHKAI	GWGCWC	1 cut(s)	43
BslFI	GGGAC	1 cut(s)	280
BsmAI	GTCTC	1 cut(s)	233
BsmFI	GGGAC	1 cut(s)	280
BsnI	GGCC	3 cut(s)	182, 321, 455
Bso31I	GGTCTC	1 cut(s)	233
Bsp1286I	GDGCHC	1 cut(s)	43
Bsp143I	GATC	4 cut(s)	18, 30, 60, 511
BspACI	CCGC	3 cut(s)	5, 139, 179
BspANI	GGCC	3 cut(s)	182, 321, 455
BspCNI	CTCAG	1 cut(s)	184
BspFNI	CGCG	1 cut(s)	179
BspHI	TCATGA	1 cut(s)	508
BspLI	GGNNCC	1 cut(s)	9
BspMI	ACCTGC	1 cut(s)	395
BspPI	GGATC	2 cut(s)	55, 506
BspQI	GCTCTTC	1 cut(s)	542
BspTNI	GGTCTC	1 cut(s)	233
BssMI	GATC	4 cut(s)	18, 30, 60, 511
BssNAI	GTATAC	1 cut(s)	460
Bst1107I	GTATAC	1 cut(s)	460
Bst2UI	CCWGG	2 cut(s)	427, 486
Bst4CI	ACNGT	3 cut(s)	16, 292, 326
Bst6I	CTCTTC	3 cut(s)	73, 94, 542
BstAPI	GCANNNNNTGC	1 cut(s)	499
BstC8I	GCNNGC	3 cut(s)	43, 277, 480
BstDEI	CTNAG	2 cut(s)	192, 372
BstF5I	GGATG	2 cut(s)	301, 494
BstFNI	CGCG	1 cut(s)	179
BstHHI	GCGC	1 cut(s)	179
BstKTI	GATC	4 cut(s)	21, 33, 63, 514
BstMAI	GTCTC	1 cut(s)	233
BstMBI	GATC	4 cut(s)	18, 30, 60, 511
BstMWI	GCNNNNNNNGC	3 cut(s)	389, 436, 499
BstNI	CCWGG	2 cut(s)	427, 486
BstNSI	RCATGY	2 cut(s)	335, 482
BstSCI	CCNGG	2 cut(s)	425, 484
BstSFI	CTRYAG	1 cut(s)	134
BstUI	CGCG	1 cut(s)	179
BstV1I	GCAGC	3 cut(s)	451, 514, 542
BstX2I	RGATCY	1 cut(s)	30
BstXI	CCANNNNNNTGG	1 cut(s)	33
BstYI	RGATCY	1 cut(s)	30
BstZ17I	GTATAC	1 cut(s)	460
BsuRI	GGCC	3 cut(s)	182, 321, 455
BtsCI	GGATG	2 cut(s)	301, 494
BtsIMutI	CAGTG	1 cut(s)	297
BveI	ACCTGC	1 cut(s)	395
Cac8I	GCNNGC	3 cut(s)	43, 277, 480
CciI	TCATGA	1 cut(s)	508
CfoI	GCGC	1 cut(s)	179
CviAII	CATG	5 cut(s)	332, 363, 479, 509, 539
DdeI	CTNAG	2 cut(s)	192, 372
DpnI	GATC	4 cut(s)	20, 32, 62, 513
DpnII	GATC	4 cut(s)	18, 30, 60, 511
EaeI	YGGCCR	1 cut(s)	453
Eam1104I	CTCTTC	3 cut(s)	73, 94, 542
EarI	CTCTTC	3 cut(s)	73, 94, 542
Eco31I	GGTCTC	1 cut(s)	233
EcoRII	CCWGG	2 cut(s)	425, 484
FaeI	CATG	5 cut(s)	335, 366, 482, 512, 542
FalI	AAGNNNNNCTT	2 cut(s)	227, 259
FaqI	GGGAC	1 cut(s)	280
FatI	CATG	5 cut(s)	331, 362, 478, 508, 538
FauI	CCCGC	1 cut(s)	132
FbaI	TGATCA	1 cut(s)	18
FblI	GTMKAC	1 cut(s)	459
Fnu4HI	GCNGC	5 cut(s)	6, 180, 440, 503, 531
FokI	GGATG	2 cut(s)	308, 501
Fsp4HI	GCNGC	5 cut(s)	6, 180, 440, 503, 531
GlaI	GCGC	1 cut(s)	178
GluI	GCNGC	5 cut(s)	6, 180, 440, 503, 531
GsuI	CTGGAG	1 cut(s)	468
HaeIII	GGCC	3 cut(s)	182, 321, 455
HhaI	GCGC	1 cut(s)	179
Hin1II	CATG	5 cut(s)	335, 366, 482, 512, 542
Hin6I	GCGC	1 cut(s)	177
HinP1I	GCGC	1 cut(s)	177
HphI	GGTGA	2 cut(s)	28, 160
Hpy166II	GTNNAC	1 cut(s)	460
Hpy188I	TCNGA	1 cut(s)	60
Hpy188III	TCNNGA	4 cut(s)	127, 145, 509, 524
Hpy8I	GTNNAC	1 cut(s)	460
Hpy99I	CGWCG	1 cut(s)	76
HpyAV	CCTTC	2 cut(s)	229, 563
HpyCH4III	ACNGT	3 cut(s)	16, 292, 326
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	3 cut(s)	275, 502, 530
HpyF10VI	GCNNNNNNNGC	3 cut(s)	389, 436, 499
HpyF3I	CTNAG	2 cut(s)	192, 372
HpySE526I	ACGT	1 cut(s)	102
Hsp92II	CATG	5 cut(s)	335, 366, 482, 512, 542
HspAI	GCGC	1 cut(s)	177
Ksp22I	TGATCA	1 cut(s)	18
Kzo9I	GATC	4 cut(s)	18, 30, 60, 511
LguI	GCTCTTC	1 cut(s)	542
LmnI	GCTCC	2 cut(s)	13, 487
Lsp1109I	GCAGC	3 cut(s)	451, 514, 542
LweI	GCATC	1 cut(s)	517
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	3 cut(s)	145, 223, 286
MalI	GATC	4 cut(s)	20, 32, 62, 513
MboI	GATC	4 cut(s)	18, 30, 60, 511
MboII	GAAGA	3 cut(s)	60, 81, 559
MfeI	CAATTG	1 cut(s)	219
MflI	RGATCY	1 cut(s)	30
MhlI	GDGCHC	1 cut(s)	43
MluCI	AATT	1 cut(s)	219
MmeI	TCCRAC	1 cut(s)	35
MnlI	CCTC	8 cut(s)	76, 97, 187, 193, 311, 372, 516, 525
MseI	TTAA	1 cut(s)	159
MslI	CAYNNNNRTG	1 cut(s)	467
MspA1I	CMGCKG	1 cut(s)	139
MspR9I	CCNGG	2 cut(s)	427, 486
MunI	CAATTG	1 cut(s)	219
MvaI	CCWGG	2 cut(s)	427, 486
MvnI	CGCG	1 cut(s)	179
MwoI	GCNNNNNNNGC	3 cut(s)	389, 436, 499
NdeII	GATC	4 cut(s)	18, 30, 60, 511
NlaIII	CATG	5 cut(s)	335, 366, 482, 512, 542
NlaIV	GGNNCC	1 cut(s)	9
NmuCI	GTSAC	1 cut(s)	145
NspI	RCATGY	2 cut(s)	335, 482
PaeI	GCATGC	1 cut(s)	482
PagI	TCATGA	1 cut(s)	508
PciSI	GCTCTTC	1 cut(s)	542
PcsI	WCGNNNNNNNCGW	1 cut(s)	443
PfoI	TCCNGGA	1 cut(s)	484
PkrI	GCNGC	5 cut(s)	7, 181, 441, 504, 532
Psp6I	CCWGG	2 cut(s)	425, 484
PspGI	CCWGG	2 cut(s)	425, 484
PspN4I	GGNNCC	1 cut(s)	9
PsuI	RGATCY	1 cut(s)	30
RseI	CAYNNNNRTG	1 cut(s)	467
SapI	GCTCTTC	1 cut(s)	542
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	5 cut(s)	6, 180, 440, 503, 531
Sau3AI	GATC	4 cut(s)	18, 30, 60, 511
ScrFI	CCNGG	2 cut(s)	427, 486
SduI	GDGCHC	1 cut(s)	43
SetI	ASST	6 cut(s)	105, 135, 245, 359, 409, 452
SfaNI	GCATC	1 cut(s)	517
SfcI	CTRYAG	1 cut(s)	134
SmiMI	CAYNNNNRTG	1 cut(s)	467
SmlI	CTYRAG	2 cut(s)	244, 516
SmoI	CTYRAG	2 cut(s)	244, 516
SphI	GCATGC	1 cut(s)	482
Sse9I	AATT	1 cut(s)	219
SsiI	CCGC	3 cut(s)	5, 139, 179
StyD4I	CCNGG	2 cut(s)	425, 484
TaaI	ACNGT	3 cut(s)	16, 292, 326
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	2 cut(s)	126, 155
TasI	AATT	1 cut(s)	219
TauI	GCSGC	2 cut(s)	8, 182
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TscAI	CASTG	1 cut(s)	297
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	3 cut(s)	439, 502, 530
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	2 cut(s)	228, 399
TspRI	CASTG	1 cut(s)	297
XceI	RCATGY	2 cut(s)	335, 482
XmiI	GTMKAC	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.