Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034117.1

Orthogroup ID

OG0001014

Physical Location & Seq

Genomic Coordinates Reverse (-)

107 .. 1800

Gene Structure 1694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034117.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

atgtcgccggactgcggcgtctacacttgctgcgcctgccagaatggcggctccaacggtgatcaagctgaaggatccctctccgtcgtcgttttgctattcctcttcggcctcaaaggcgacctcgccgtcttctccatcctagctagactcagaaagagaaagctcttatcctctctcaggactgagggtgcgattatgaataatgaagcaattgttgctgttttgaaggagaccttgagatatggtctgtttcttgggacttttgcaggcacatttgtttcagtggatgagattattgcttctttgggaggccatcataagcatgttccttgttcttttatattcagcttcgcatggacagctaagtggagggctttgttagcagggcttatagcaggaccgtctatgcttcttaccgggcataacacgcaacatacgagcttagctgtatacatacttatgagtgctgccatgttggccacgcgttgtgggattcaaagcaaacggtttggtcgtattggagatattgttaaaagcaagacggcgagcatcgcggagccgcagttcgcgacagcaaaaacgtcaaggtacctggtctcattagtggatagccacaccattgcccagaacataagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TMEM135_C_rich

Protein Analysis

213

Amino Acids

22.86

Weight (kDa)

9.51

Isoelectric Point (pI)

29.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34630 AT1G34630 AT1G34630 AT1G34630 AT1G34630
fragaria_vesca	FvH4_5g37331 FvH4_5g37331
malus_domestica	MD08G1182800.v1.1
prunus_persica	Prupe.1G517000_v2.0.a1 Prupe.1G517000_v2.0.a1
pyrus_communis	pycom08g15660
rosa_chinensis	RchiOBHm_Chr3g0470741 RchiOBHm_Chr4g0408951 RchiOBHm_Chr7g0238981
rosa_laevigata	RLG00000000793 RLG00000007867 RLG00000014356 RLG00000015234 RLG00000016579 RLG00000020758
rosa_multiflora	Rmu_co8298683.1_g000001 Rmu_sc0002152.1_g000014 Rmu_sc0004132.1_g000004 Rmu_sc0004879.1_g000005 Rmu_sc0005866.1_g000014 Rmu_sc0010178.1_g000001 Rmu_sc0029797.1_g000001 Rmu_sc0032697.1_g000001 Rmu_sc0034117.1_g000001 Rmu_ssc0000233.1_g000066
rosa_roxburghii	Rroxscaffold_3G00221410 Rroxscaffold_3G00221420
rosa_rugosa	Rorug03G0157600 Rorug05G0148200 Rorug05G0232900 Rorug05G0238700 Rorug07G0324200.1
rosa_samantha	Rh1BG208000 Rh1DG234700 Rh2AG003700 Rh2AG216800 Rh2DG222500 Rh3AG161900 Rh3AG329400 Rh3BG186700 Rh3CG176900 Rh3DG308000 Rh4AG125400 Rh4AG152700 Rh4BG154900 Rh4CG133600 Rh4DG112900 Rh5AG299600 Rh7AG465300 Rh7AG479200 Rh7BG451800 Rh7CG251000 Rh7CG496300 Rh7DG343400 Rh7DG463900
rosa_wichuraiana	Rw7G040000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	17, 128
Acc65I	GGTACC	1 cut(s)	591
AccB1I	GGYRCC	1 cut(s)	591
AccI	GTMKAC	2 cut(s)	21, 453
AccII	CGCG	3 cut(s)	487, 557, 572
AciI	CCGC	4 cut(s)	15, 48, 557, 563
AclWI	GGATC	2 cut(s)	69, 82
AcoI	YGGCCR	1 cut(s)	480
AcuI	CTGAAG	1 cut(s)	90
AcyI	GRCGYC	1 cut(s)	18
AfaI	GTAC	1 cut(s)	593
AfiI	CCNNNNNNNGG	2 cut(s)	14, 180
AflIII	ACRYGT	1 cut(s)	485
AgsI	TTSAA	2 cut(s)	229, 500
AjnI	CCWGG	1 cut(s)	594
AloI	GAACNNNNNNTCC	2 cut(s)	551, 583
AluBI	AGCT	7 cut(s)	68, 146, 166, 351, 365, 444, 449
AluI	AGCT	7 cut(s)	68, 146, 166, 351, 365, 444, 449
Alw26I	GTCTC	2 cut(s)	227, 604
AlwI	GGATC	2 cut(s)	69, 82
AoxI	GGCC	3 cut(s)	109, 313, 480
ApeKI	GCWGC	2 cut(s)	30, 470
Asp718I	GGTACC	1 cut(s)	591
AspLEI	GCGC	1 cut(s)	35
AspS9I	GGNCC	1 cut(s)	401
AsuC2I	CCSGG	1 cut(s)	421
AsuHPI	GGTGA	1 cut(s)	71
AvaII	GGWCC	1 cut(s)	401
BalI	TGGCCA	1 cut(s)	482
BamHI	GGATCC	1 cut(s)	74
BanI	GGYRCC	1 cut(s)	591
BbsI	GAAGAC	1 cut(s)	124
BbvI	GCAGC	2 cut(s)	17, 457
BccI	CCATC	2 cut(s)	146, 324
BceAI	ACGGC	2 cut(s)	113, 561
BciT130I	CCWGG	1 cut(s)	596
BclI	TGATCA	1 cut(s)	61
BcnI	CCSGG	1 cut(s)	421
BcoDI	GTCTC	2 cut(s)	227, 604
BfaI	CTAG	2 cut(s)	143, 147
BglI	GCCNNNNNGGC	3 cut(s)	45, 117, 479
BisI	GCNGC	5 cut(s)	16, 31, 49, 471, 563
BlpI	GCTNAGC	1 cut(s)	445
BlsI	GCNGC	5 cut(s)	17, 32, 50, 472, 564
Bme1390I	CCNGG	2 cut(s)	421, 596
Bme18I	GGWCC	1 cut(s)	401
BmgT120I	GGNCC	1 cut(s)	401
BmiI	GGNNCC	4 cut(s)	52, 76, 561, 593
BmrFI	CCNGG	2 cut(s)	421, 596
BmsI	GCATC	1 cut(s)	561
BpiI	GAAGAC	1 cut(s)	124
Bpu1102I	GCTNAGC	1 cut(s)	445
BpuEI	CTTGAG	1 cut(s)	259
BpuMI	CCSGG	1 cut(s)	421
BsaHI	GRCGYC	1 cut(s)	18
BsaI	GGTCTC	2 cut(s)	227, 604
BsaXI	ACNNNNNCTCC	4 cut(s)	516, 546, 551, 581
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 180
Bse3DI	GCAATG	1 cut(s)	621
BseBI	CCWGG	1 cut(s)	596
BseGI	GGATG	2 cut(s)	138, 295
BseLI	CCNNNNNNNGG	2 cut(s)	14, 180
BseMI	GCAATG	1 cut(s)	621
BseMII	CTCAG	3 cut(s)	166, 177, 193
BseXI	GCAGC	2 cut(s)	17, 457
Bsh1236I	CGCG	3 cut(s)	487, 557, 572
BshFI	GGCC	3 cut(s)	111, 315, 482
BshNI	GGYRCC	1 cut(s)	591
BsiSI	CCGG	2 cut(s)	8, 420
BslFI	GGGAC	1 cut(s)	274
BslI	CCNNNNNNNGG	2 cut(s)	14, 180
BsmAI	GTCTC	2 cut(s)	227, 604
BsmFI	GGGAC	1 cut(s)	274
BsnI	GGCC	3 cut(s)	111, 315, 482
Bso31I	GGTCTC	2 cut(s)	227, 604
Bsp143I	GATC	2 cut(s)	61, 74
Bsp1720I	GCTNAGC	1 cut(s)	445
Bsp68I	TCGCGA	1 cut(s)	572
BspACI	CCGC	4 cut(s)	15, 48, 557, 563
BspANI	GGCC	3 cut(s)	111, 315, 482
BspCNI	CTCAG	3 cut(s)	165, 178, 192
BspFNI	CGCG	3 cut(s)	487, 557, 572
BspLI	GGNNCC	4 cut(s)	52, 76, 561, 593
BspPI	GGATC	2 cut(s)	69, 82
BspT107I	GGYRCC	1 cut(s)	591
BspTNI	GGTCTC	2 cut(s)	227, 604
BsrDI	GCAATG	1 cut(s)	621
BssMI	GATC	2 cut(s)	61, 74
BssNAI	GTATAC	1 cut(s)	454
BssNI	GRCGYC	1 cut(s)	18
Bst1107I	GTATAC	1 cut(s)	454
Bst2UI	CCWGG	1 cut(s)	596
Bst4CI	ACNGT	3 cut(s)	59, 405, 510
Bst6I	CTCTTC	1 cut(s)	110
BstACI	GRCGYC	1 cut(s)	18
BstAPI	GCANNNNNTGC	1 cut(s)	218
BstC8I	GCNNGC	3 cut(s)	37, 271, 550
BstDEI	CTNAG	5 cut(s)	152, 179, 186, 366, 445
BstENI	CCTNNNNNAGG	1 cut(s)	178
BstF5I	GGATG	2 cut(s)	138, 295
BstFNI	CGCG	3 cut(s)	487, 557, 572
BstHHI	GCGC	1 cut(s)	35
BstKTI	GATC	2 cut(s)	64, 77
BstMAI	GTCTC	2 cut(s)	227, 604
BstMBI	GATC	2 cut(s)	61, 74
BstMWI	GCNNNNNNNGC	9 cut(s)	36, 45, 117, 218, 362, 383, 430, 479, 554
BstNI	CCWGG	1 cut(s)	596
BstNSI	RCATGY	1 cut(s)	329
BstSCI	CCNGG	2 cut(s)	419, 594
BstUI	CGCG	3 cut(s)	487, 557, 572
BstV1I	GCAGC	2 cut(s)	17, 457
BstV2I	GAAGAC	1 cut(s)	124
BstX2I	RGATCY	1 cut(s)	74
BstYI	RGATCY	1 cut(s)	74
BstZ17I	GTATAC	1 cut(s)	454
BsuRI	GGCC	3 cut(s)	111, 315, 482
BtgZI	GCGATG	1 cut(s)	538
BtsCI	GGATG	2 cut(s)	138, 295
BtsIMutI	CAGTG	1 cut(s)	291
BtuMI	TCGCGA	1 cut(s)	572
Cac8I	GCNNGC	3 cut(s)	37, 271, 550
CfoI	GCGC	1 cut(s)	35
Cfr13I	GGNCC	1 cut(s)	401
CseI	GACGC	1 cut(s)	7
CsiI	ACCWGGT	1 cut(s)	594
Csp6I	GTAC	1 cut(s)	592
CviAII	CATG	3 cut(s)	326, 357, 475
CviQI	GTAC	1 cut(s)	592
DdeI	CTNAG	5 cut(s)	152, 179, 186, 366, 445
DpnI	GATC	2 cut(s)	63, 76
DpnII	GATC	2 cut(s)	61, 74
DrdI	GACNNNNNNGTC	2 cut(s)	17, 128
DseDI	GACNNNNNNGTC	2 cut(s)	17, 128
EaeI	YGGCCR	1 cut(s)	480
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
Eco31I	GGTCTC	2 cut(s)	227, 604
Eco47I	GGWCC	1 cut(s)	401
Eco57I	CTGAAG	1 cut(s)	90
EcoNI	CCTNNNNNAGG	1 cut(s)	178
EcoRII	CCWGG	1 cut(s)	594
FaeI	CATG	3 cut(s)	329, 360, 478
FalI	AAGNNNNNCTT	2 cut(s)	221, 253
FaqI	GGGAC	1 cut(s)	274
FatI	CATG	3 cut(s)	325, 356, 474
FbaI	TGATCA	1 cut(s)	61
FblI	GTMKAC	2 cut(s)	21, 453
Fnu4HI	GCNGC	5 cut(s)	16, 31, 49, 471, 563
FokI	GGATG	2 cut(s)	125, 302
Fsp4HI	GCNGC	5 cut(s)	16, 31, 49, 471, 563
FspBI	CTAG	2 cut(s)	143, 147
GlaI	GCGC	1 cut(s)	34
GluI	GCNGC	5 cut(s)	16, 31, 49, 471, 563
HaeIII	GGCC	3 cut(s)	111, 315, 482
HapII	CCGG	2 cut(s)	8, 420
HgaI	GACGC	1 cut(s)	7
HhaI	GCGC	1 cut(s)	35
Hin1I	GRCGYC	1 cut(s)	18
Hin1II	CATG	3 cut(s)	329, 360, 478
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HinfI	GANTC	2 cut(s)	150, 496
HpaII	CCGG	2 cut(s)	8, 420
HphI	GGTGA	1 cut(s)	71
Hpy166II	GTNNAC	2 cut(s)	22, 454
Hpy188I	TCNGA	1 cut(s)	155
Hpy188III	TCNNGA	2 cut(s)	181, 571
Hpy8I	GTNNAC	2 cut(s)	22, 454
Hpy99I	CGWCG	2 cut(s)	89, 92
HpyAV	CCTTC	2 cut(s)	65, 223
HpyCH4III	ACNGT	3 cut(s)	59, 405, 510
HpyCH4IV	ACGT	1 cut(s)	584
HpyCH4V	TGCA	1 cut(s)	269
HpyF10VI	GCNNNNNNNGC	9 cut(s)	36, 45, 117, 218, 362, 383, 430, 479, 554
HpyF3I	CTNAG	5 cut(s)	152, 179, 186, 366, 445
HpySE526I	ACGT	1 cut(s)	584
Hsp92I	GRCGYC	1 cut(s)	18
Hsp92II	CATG	3 cut(s)	329, 360, 478
HspAI	GCGC	1 cut(s)	33
KpnI	GGTACC	1 cut(s)	595
Ksp22I	TGATCA	1 cut(s)	61
Kzo9I	GATC	2 cut(s)	61, 74
LmnI	GCTCC	2 cut(s)	56, 559
Lsp1109I	GCAGC	2 cut(s)	17, 457
LweI	GCATC	1 cut(s)	561
MabI	ACCWGGT	1 cut(s)	594
MaeI	CTAG	2 cut(s)	143, 147
MaeII	ACGT	1 cut(s)	584
MalI	GATC	2 cut(s)	63, 76
MboI	GATC	2 cut(s)	61, 74
MboII	GAAGA	2 cut(s)	97, 124
MfeI	CAATTG	1 cut(s)	213
MflI	RGATCY	1 cut(s)	74
MlsI	TGGCCA	1 cut(s)	482
MluCI	AATT	1 cut(s)	213
MluI	ACGCGT	1 cut(s)	485
MluNI	TGGCCA	1 cut(s)	482
MlyI	GAGTC	1 cut(s)	144
MmeI	TCCRAC	1 cut(s)	78
MnlI	CCTC	8 cut(s)	89, 113, 122, 134, 181, 184, 305, 366
Mox20I	TGGCCA	1 cut(s)	482
MscI	TGGCCA	1 cut(s)	482
MseI	TTAA	1 cut(s)	534
MslI	CAYNNNNRTG	2 cut(s)	324, 461
Msp20I	TGGCCA	1 cut(s)	482
MspI	CCGG	2 cut(s)	8, 420
MspR9I	CCNGG	2 cut(s)	421, 596
MunI	CAATTG	1 cut(s)	213
MvaI	CCWGG	1 cut(s)	596
MvnI	CGCG	3 cut(s)	487, 557, 572
MwoI	GCNNNNNNNGC	9 cut(s)	36, 45, 117, 218, 362, 383, 430, 479, 554
NciI	CCSGG	1 cut(s)	421
NdeII	GATC	2 cut(s)	61, 74
NlaIII	CATG	3 cut(s)	329, 360, 478
NlaIV	GGNNCC	4 cut(s)	52, 76, 561, 593
NruI	TCGCGA	1 cut(s)	572
NspI	RCATGY	1 cut(s)	329
PcsI	WCGNNNNNNNCGW	2 cut(s)	437, 514
PfeI	GAWTC	1 cut(s)	496
PkrI	GCNGC	5 cut(s)	17, 32, 50, 472, 564
PleI	GAGTC	1 cut(s)	144
PpsI	GAGTC	1 cut(s)	144
Psp6I	CCWGG	1 cut(s)	594
PspGI	CCWGG	1 cut(s)	594
PspN4I	GGNNCC	4 cut(s)	52, 76, 561, 593
PspPI	GGNCC	1 cut(s)	401
PsuI	RGATCY	1 cut(s)	74
RruI	TCGCGA	1 cut(s)	572
RsaI	GTAC	1 cut(s)	593
RsaNI	GTAC	1 cut(s)	592
RseI	CAYNNNNRTG	2 cut(s)	324, 461
SaqAI	TTAA	1 cut(s)	534
SatI	GCNGC	5 cut(s)	16, 31, 49, 471, 563
Sau3AI	GATC	2 cut(s)	61, 74
Sau96I	GGNCC	1 cut(s)	401
SchI	GAGTC	1 cut(s)	144
ScrFI	CCNGG	2 cut(s)	421, 596
SexAI	ACCWGGT	1 cut(s)	594
SfaNI	GCATC	1 cut(s)	561
SinI	GGWCC	1 cut(s)	401
SmiMI	CAYNNNNRTG	2 cut(s)	324, 461
SmlI	CTYRAG	1 cut(s)	238
SmoI	CTYRAG	1 cut(s)	238
Sse9I	AATT	1 cut(s)	213
SsiI	CCGC	4 cut(s)	15, 48, 557, 563
SspMI	CTAG	2 cut(s)	143, 147
StyD4I	CCNGG	2 cut(s)	419, 594
TaaI	ACNGT	3 cut(s)	59, 405, 510
TaiI	ACGT	1 cut(s)	587
TasI	AATT	1 cut(s)	213
TauI	GCSGC	3 cut(s)	18, 51, 565
TfiI	GAWTC	1 cut(s)	496
Tru1I	TTAA	1 cut(s)	534
Tru9I	TTAA	1 cut(s)	534
TscAI	CASTG	1 cut(s)	291
TseI	GCWGC	2 cut(s)	30, 470
TspDTI	ATGAA	2 cut(s)	215, 222
TspGWI	ACGGA	1 cut(s)	73
TspRI	CASTG	1 cut(s)	291
VpaK11BI	GGWCC	1 cut(s)	401
XagI	CCTNNNNNAGG	1 cut(s)	178
XceI	RCATGY	1 cut(s)	329
XmiI	GTMKAC	2 cut(s)	21, 453
XspI	CTAG	2 cut(s)	143, 147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.