Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010178.1

Orthogroup ID

OG0001014

Physical Location & Seq

Genomic Coordinates Forward (+)

2854 .. 3893

Gene Structure 1040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010178.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

atgtcgccggacggcgacgtctgcacctgctccgccggcggtcacgccgaagatccggtgtgcgcgcattgcaggaaatccgatccctctccgtcgtcgttttgctattcctcttcgctcaaatacgttcctgtgccgttgagcgattccgagaagctacggcgggtcgtgactgcttcgattaagggcttcaccatcggcgccggcctcaaaggcggcctcgccgtcttctccatcctagctagactcagaaagagaaagctcttagcctctctcaggactgagggtgcgattacgaataatgaagcaattgttactgctttgaaggagaccttgagatatggtctgtttcttgggacttttgcaggcacatttgtttctgtggatgagattattgcttctttgggaggccaccgcaggacagctaagtggagggctttgttagcagggcttatagcaggaccgtctatgcttcttacctggcataacacacagcatacgagcttggctgtatacatacttatgcgtgctgccgtgttggccaggcgttgtgggattaaaagcaaacggtatggtcgtgtttgtagacctctcacttggaagcacggtgacattttccttatgtgtctctcctcttcgcaaattctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TMEM135_C_rich

Protein Analysis

216

Amino Acids

23.35

Weight (kDa)

9.92

Isoelectric Point (pI)

43.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34630 AT1G34630 AT1G34630 AT1G34630 AT1G34630
fragaria_vesca	FvH4_5g37331 FvH4_5g37331
malus_domestica	MD08G1182800.v1.1
prunus_persica	Prupe.1G517000_v2.0.a1 Prupe.1G517000_v2.0.a1
pyrus_communis	pycom08g15660
rosa_chinensis	RchiOBHm_Chr3g0470741 RchiOBHm_Chr4g0408951 RchiOBHm_Chr7g0238981
rosa_laevigata	RLG00000000793 RLG00000007867 RLG00000014356 RLG00000015234 RLG00000016579 RLG00000020758
rosa_multiflora	Rmu_co8298683.1_g000001 Rmu_sc0002152.1_g000014 Rmu_sc0004132.1_g000004 Rmu_sc0004879.1_g000005 Rmu_sc0005866.1_g000014 Rmu_sc0010178.1_g000001 Rmu_sc0029797.1_g000001 Rmu_sc0032697.1_g000001 Rmu_sc0034117.1_g000001 Rmu_ssc0000233.1_g000066
rosa_roxburghii	Rroxscaffold_3G00221410 Rroxscaffold_3G00221420
rosa_rugosa	Rorug03G0157600 Rorug05G0148200 Rorug05G0232900 Rorug05G0238700 Rorug07G0324200.1
rosa_samantha	Rh1BG208000 Rh1DG234700 Rh2AG003700 Rh2AG216800 Rh2DG222500 Rh3AG161900 Rh3AG329400 Rh3BG186700 Rh3CG176900 Rh3DG308000 Rh4AG125400 Rh4AG152700 Rh4BG154900 Rh4CG133600 Rh4DG112900 Rh5AG299600 Rh7AG465300 Rh7AG479200 Rh7BG451800 Rh7CG251000 Rh7CG496300 Rh7DG343400 Rh7DG463900
rosa_wichuraiana	Rw7G040000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	35
AasI	GACNNNNNNGTC	1 cut(s)	17
AatII	GACGTC	1 cut(s)	21
Acc36I	ACCTGC	1 cut(s)	35
AccB1I	GGYRCC	1 cut(s)	200
AccI	GTMKAC	2 cut(s)	513, 586
AccII	CGCG	1 cut(s)	65
AciI	CCGC	5 cut(s)	33, 39, 163, 216, 415
AclWI	GGATC	2 cut(s)	47, 77
AcoI	YGGCCR	1 cut(s)	540
AcsI	RAATTY	1 cut(s)	642
AcyI	GRCGYC	2 cut(s)	18, 201
AfiI	CCNNNNNNNGG	1 cut(s)	276
AgsI	TTSAA	1 cut(s)	325
AjnI	CCWGG	2 cut(s)	479, 542
AluBI	AGCT	5 cut(s)	157, 242, 262, 425, 504
AluI	AGCT	5 cut(s)	157, 242, 262, 425, 504
Alw26I	GTCTC	2 cut(s)	323, 632
AlwI	GGATC	2 cut(s)	47, 77
AoxI	GGCC	4 cut(s)	205, 217, 409, 540
ApeKI	GCWGC	1 cut(s)	530
ApoI	RAATTY	1 cut(s)	642
AspLEI	GCGC	3 cut(s)	65, 67, 203
AspS9I	GGNCC	1 cut(s)	461
AsuHPI	GGTGA	2 cut(s)	184, 620
AvaII	GGWCC	1 cut(s)	461
BalI	TGGCCA	1 cut(s)	542
BanI	GGYRCC	1 cut(s)	200
BbsI	GAAGAC	1 cut(s)	220
BbvI	GCAGC	1 cut(s)	517
BccI	CCATC	2 cut(s)	203, 242
BceAI	ACGGC	5 cut(s)	28, 121, 176, 209, 518
BciT130I	CCWGG	2 cut(s)	481, 544
BcoDI	GTCTC	2 cut(s)	323, 632
BfaI	CTAG	2 cut(s)	239, 243
BfoI	RGCGCY	1 cut(s)	204
BfuAI	ACCTGC	1 cut(s)	35
BglI	GCCNNNNNGGC	2 cut(s)	213, 539
BisI	GCNGC	2 cut(s)	217, 531
BlsI	GCNGC	2 cut(s)	218, 532
Bme1390I	CCNGG	2 cut(s)	481, 544
Bme18I	GGWCC	1 cut(s)	461
BmgT120I	GGNCC	1 cut(s)	461
BmiI	GGNNCC	1 cut(s)	202
BmrFI	CCNGG	2 cut(s)	481, 544
BpiI	GAAGAC	1 cut(s)	220
BpuEI	CTTGAG	1 cut(s)	355
BsaHI	GRCGYC	2 cut(s)	18, 201
BsaI	GGTCTC	1 cut(s)	323
BsaWI	WCCGGW	1 cut(s)	55
Bsc4I	CCNNNNNNNGG	1 cut(s)	276
Bse118I	RCCGGY	2 cut(s)	35, 203
Bse3DI	GCAATG	1 cut(s)	67
BseBI	CCWGG	2 cut(s)	481, 544
BseGI	GGATG	2 cut(s)	234, 391
BseLI	CCNNNNNNNGG	1 cut(s)	276
BseMI	GCAATG	1 cut(s)	67
BseMII	CTCAG	3 cut(s)	262, 273, 289
BsePI	GCGCGC	1 cut(s)	63
BseRI	GAGGAG	1 cut(s)	622
BseXI	GCAGC	1 cut(s)	517
BsgI	GTGCAG	1 cut(s)	7
Bsh1236I	CGCG	1 cut(s)	65
BshFI	GGCC	4 cut(s)	207, 219, 411, 542
BshNI	GGYRCC	1 cut(s)	200
BsiSI	CCGG	4 cut(s)	8, 36, 56, 204
BslFI	GGGAC	1 cut(s)	370
BslI	CCNNNNNNNGG	1 cut(s)	276
BsmAI	GTCTC	2 cut(s)	323, 632
BsmFI	GGGAC	1 cut(s)	370
BsnI	GGCC	4 cut(s)	207, 219, 411, 542
Bso31I	GGTCTC	1 cut(s)	323
Bsp143I	GATC	2 cut(s)	52, 82
BspACI	CCGC	5 cut(s)	33, 39, 163, 216, 415
BspANI	GGCC	4 cut(s)	207, 219, 411, 542
BspCNI	CTCAG	3 cut(s)	261, 274, 288
BspFNI	CGCG	1 cut(s)	65
BspLI	GGNNCC	1 cut(s)	202
BspMI	ACCTGC	1 cut(s)	35
BspPI	GGATC	2 cut(s)	47, 77
BspT107I	GGYRCC	1 cut(s)	200
BspTNI	GGTCTC	1 cut(s)	323
BsrDI	GCAATG	1 cut(s)	67
BsrFI	RCCGGY	2 cut(s)	35, 203
BssAI	RCCGGY	2 cut(s)	35, 203
BssHII	GCGCGC	1 cut(s)	63
BssMI	GATC	2 cut(s)	52, 82
BssNAI	GTATAC	1 cut(s)	514
BssNI	GRCGYC	2 cut(s)	18, 201
Bst1107I	GTATAC	1 cut(s)	514
Bst2UI	CCWGG	2 cut(s)	481, 544
Bst4CI	ACNGT	3 cut(s)	465, 570, 608
Bst6I	CTCTTC	2 cut(s)	118, 640
BstACI	GRCGYC	2 cut(s)	18, 201
BstC8I	GCNNGC	5 cut(s)	37, 65, 205, 367, 528
BstDEI	CTNAG	5 cut(s)	248, 265, 275, 282, 426
BstENI	CCTNNNNNAGG	1 cut(s)	274
BstF5I	GGATG	2 cut(s)	234, 391
BstFNI	CGCG	1 cut(s)	65
BstH2I	RGCGCY	1 cut(s)	204
BstHHI	GCGC	3 cut(s)	65, 67, 203
BstKTI	GATC	2 cut(s)	55, 85
BstMAI	GTCTC	2 cut(s)	323, 632
BstMBI	GATC	2 cut(s)	52, 82
BstMWI	GCNNNNNNNGC	6 cut(s)	21, 36, 69, 213, 443, 539
BstNI	CCWGG	2 cut(s)	481, 544
BstSCI	CCNGG	2 cut(s)	479, 542
BstUI	CGCG	1 cut(s)	65
BstV1I	GCAGC	1 cut(s)	517
BstV2I	GAAGAC	1 cut(s)	220
BstX2I	RGATCY	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	52
BstZ17I	GTATAC	1 cut(s)	514
BsuRI	GGCC	4 cut(s)	207, 219, 411, 542
BtsCI	GGATG	2 cut(s)	234, 391
BveI	ACCTGC	1 cut(s)	35
Cac8I	GCNNGC	5 cut(s)	37, 65, 205, 367, 528
CfoI	GCGC	3 cut(s)	65, 67, 203
Cfr10I	RCCGGY	2 cut(s)	35, 203
Cfr13I	GGNCC	1 cut(s)	461
DdeI	CTNAG	5 cut(s)	248, 265, 275, 282, 426
DinI	GGCGCC	1 cut(s)	202
DpnI	GATC	2 cut(s)	54, 84
DpnII	GATC	2 cut(s)	52, 82
DrdI	GACNNNNNNGTC	1 cut(s)	17
DseDI	GACNNNNNNGTC	1 cut(s)	17
EaeI	YGGCCR	1 cut(s)	540
Eam1104I	CTCTTC	2 cut(s)	118, 640
EarI	CTCTTC	2 cut(s)	118, 640
EciI	GGCGGA	1 cut(s)	22
Eco31I	GGTCTC	1 cut(s)	323
Eco47I	GGWCC	1 cut(s)	461
EcoNI	CCTNNNNNAGG	1 cut(s)	274
EcoRII	CCWGG	2 cut(s)	479, 542
EgeI	GGCGCC	1 cut(s)	202
EheI	GGCGCC	1 cut(s)	202
FalI	AAGNNNNNCTT	2 cut(s)	317, 349
FaqI	GGGAC	1 cut(s)	370
FauI	CCCGC	1 cut(s)	156
FblI	GTMKAC	2 cut(s)	513, 586
Fnu4HI	GCNGC	2 cut(s)	217, 531
FokI	GGATG	2 cut(s)	221, 398
Fsp4HI	GCNGC	2 cut(s)	217, 531
FspBI	CTAG	2 cut(s)	239, 243
GlaI	GCGC	3 cut(s)	64, 66, 202
GluI	GCNGC	2 cut(s)	217, 531
HaeII	RGCGCY	1 cut(s)	204
HaeIII	GGCC	4 cut(s)	207, 219, 411, 542
HapII	CCGG	4 cut(s)	8, 36, 56, 204
HhaI	GCGC	3 cut(s)	65, 67, 203
Hin1I	GRCGYC	2 cut(s)	18, 201
Hin6I	GCGC	3 cut(s)	63, 65, 201
HinP1I	GCGC	3 cut(s)	63, 65, 201
HinfI	GANTC	2 cut(s)	146, 246
HpaII	CCGG	4 cut(s)	8, 36, 56, 204
HphI	GGTGA	2 cut(s)	184, 620
Hpy166II	GTNNAC	2 cut(s)	514, 587
Hpy188I	TCNGA	3 cut(s)	82, 151, 251
Hpy188III	TCNNGA	2 cut(s)	169, 277
Hpy8I	GTNNAC	2 cut(s)	514, 587
Hpy99I	CGWCG	3 cut(s)	20, 97, 100
HpyAV	CCTTC	1 cut(s)	319
HpyCH4III	ACNGT	3 cut(s)	465, 570, 608
HpyCH4IV	ACGT	2 cut(s)	18, 126
HpyCH4V	TGCA	3 cut(s)	24, 72, 365
HpyF10VI	GCNNNNNNNGC	6 cut(s)	21, 36, 69, 213, 443, 539
HpyF3I	CTNAG	5 cut(s)	248, 265, 275, 282, 426
HpySE526I	ACGT	2 cut(s)	18, 126
Hsp92I	GRCGYC	2 cut(s)	18, 201
HspAI	GCGC	3 cut(s)	63, 65, 201
KasI	GGCGCC	1 cut(s)	200
KroI	GCCGGC	2 cut(s)	35, 203
KroNI	GCCGGC	2 cut(s)	37, 205
Kzo9I	GATC	2 cut(s)	52, 82
LmnI	GCTCC	1 cut(s)	35
Lsp1109I	GCAGC	1 cut(s)	517
MaeI	CTAG	2 cut(s)	239, 243
MaeII	ACGT	2 cut(s)	18, 126
MaeIII	GTNAC	4 cut(s)	41, 169, 313, 608
MalI	GATC	2 cut(s)	54, 84
MboI	GATC	2 cut(s)	52, 82
MboII	GAAGA	4 cut(s)	62, 105, 220, 627
MfeI	CAATTG	1 cut(s)	309
MflI	RGATCY	1 cut(s)	52
MlsI	TGGCCA	1 cut(s)	542
MluCI	AATT	2 cut(s)	309, 642
MluNI	TGGCCA	1 cut(s)	542
Mly113I	GGCGCC	1 cut(s)	201
MlyI	GAGTC	1 cut(s)	240
Mox20I	TGGCCA	1 cut(s)	542
MreI	CGCCGGCG	1 cut(s)	35
MroNI	GCCGGC	2 cut(s)	35, 203
MscI	TGGCCA	1 cut(s)	542
MseI	TTAA	2 cut(s)	183, 558
MslI	CAYNNNNRTG	1 cut(s)	521
Msp20I	TGGCCA	1 cut(s)	542
MspI	CCGG	4 cut(s)	8, 36, 56, 204
MspR9I	CCNGG	2 cut(s)	481, 544
MunI	CAATTG	1 cut(s)	309
MvaI	CCWGG	2 cut(s)	481, 544
MvnI	CGCG	1 cut(s)	65
MwoI	GCNNNNNNNGC	6 cut(s)	21, 36, 69, 213, 443, 539
NaeI	GCCGGC	2 cut(s)	37, 205
NarI	GGCGCC	1 cut(s)	201
NdeII	GATC	2 cut(s)	52, 82
NgoMIV	GCCGGC	2 cut(s)	35, 203
NlaIV	GGNNCC	1 cut(s)	202
NmuCI	GTSAC	3 cut(s)	41, 169, 608
PaqCI	CACCTGC	1 cut(s)	35
PauI	GCGCGC	1 cut(s)	63
PcsI	WCGNNNNNNNCGW	1 cut(s)	574
PdiI	GCCGGC	2 cut(s)	37, 205
PfeI	GAWTC	1 cut(s)	146
PkrI	GCNGC	2 cut(s)	218, 532
PleI	GAGTC	1 cut(s)	240
PluTI	GGCGCC	1 cut(s)	204
PpsI	GAGTC	1 cut(s)	240
Psp6I	CCWGG	2 cut(s)	479, 542
PspGI	CCWGG	2 cut(s)	479, 542
PspN4I	GGNNCC	1 cut(s)	202
PspPI	GGNCC	1 cut(s)	461
PsuI	RGATCY	1 cut(s)	52
PteI	GCGCGC	1 cut(s)	63
RseI	CAYNNNNRTG	1 cut(s)	521
SaqAI	TTAA	2 cut(s)	183, 558
SatI	GCNGC	2 cut(s)	217, 531
Sau3AI	GATC	2 cut(s)	52, 82
Sau96I	GGNCC	1 cut(s)	461
SchI	GAGTC	1 cut(s)	240
ScrFI	CCNGG	2 cut(s)	481, 544
SfoI	GGCGCC	1 cut(s)	202
SgrAI	CRCCGGYG	1 cut(s)	35
SinI	GGWCC	1 cut(s)	461
SmiMI	CAYNNNNRTG	1 cut(s)	521
SmlI	CTYRAG	1 cut(s)	334
SmoI	CTYRAG	1 cut(s)	334
Sse9I	AATT	2 cut(s)	309, 642
SsiI	CCGC	5 cut(s)	33, 39, 163, 216, 415
SspDI	GGCGCC	1 cut(s)	200
SspMI	CTAG	2 cut(s)	239, 243
StyD4I	CCNGG	2 cut(s)	479, 542
TaaI	ACNGT	3 cut(s)	465, 570, 608
TaiI	ACGT	2 cut(s)	21, 129
TaqI	TCGA	1 cut(s)	179
TasI	AATT	2 cut(s)	309, 642
TauI	GCSGC	1 cut(s)	219
TfiI	GAWTC	1 cut(s)	146
Tru1I	TTAA	2 cut(s)	183, 558
Tru9I	TTAA	2 cut(s)	183, 558
TseFI	GTSAC	3 cut(s)	41, 169, 608
TseI	GCWGC	1 cut(s)	530
Tsp45I	GTSAC	3 cut(s)	41, 169, 608
TspDTI	ATGAA	1 cut(s)	318
TspGWI	ACGGA	1 cut(s)	81
VpaK11BI	GGWCC	1 cut(s)	461
XagI	CCTNNNNNAGG	1 cut(s)	274
XapI	RAATTY	1 cut(s)	642
XmiI	GTMKAC	2 cut(s)	513, 586
XspI	CTAG	2 cut(s)	239, 243
ZraI	GACGTC	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.