Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004132.1

Orthogroup ID

OG0001014

Physical Location & Seq

Genomic Coordinates Forward (+)

23525 .. 25067

Gene Structure 1543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004132.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

atgtcgccggacggcgacgtctgcacctgctccgccggcggtcacgccgaagatccggtgtgcgcgcattgcaggaaatccgatccctctccgtcgtcgttttgctattcctcttcgctcaaatacgttcctgtgccgttgagcgattccgagaagctacggcgggtcgtgactgcttcgattaagggcttcaccatcggcgccggcctcaaaggcggcctcgccgtcttctccatcctagctagactcagaaagagaaagctcttagcctctctcaggatgtggacatgcttgctttttaggattttcaagatgtgtaatgtaccaatggtagcaatggggacgttcccgactggcctggccttggctattgagaagaaaagcaggcgtattgagatatcactctactgtctcgctcgagcgattgagagctttttcacctgcatggctgatactggatacttgccacaaacaaaaaaattgaagagagctgacgtggtgatctttagcttatcaaccgccatcataatgcattgctatgcagaggagagggaagtgttcagatccaagtacttgaatgttcttgactgggtttttggcgtcccacctcctccttgtgaaaccccccgctgcaaaaagagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TMEM135_C_rich

Protein Analysis

214

Amino Acids

23.69

Weight (kDa)

9.4

Isoelectric Point (pI)

59.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34630 AT1G34630 AT1G34630 AT1G34630 AT1G34630
fragaria_vesca	FvH4_5g37331 FvH4_5g37331
malus_domestica	MD08G1182800.v1.1
prunus_persica	Prupe.1G517000_v2.0.a1 Prupe.1G517000_v2.0.a1
pyrus_communis	pycom08g15660
rosa_chinensis	RchiOBHm_Chr3g0470741 RchiOBHm_Chr4g0408951 RchiOBHm_Chr7g0238981
rosa_laevigata	RLG00000000793 RLG00000007867 RLG00000014356 RLG00000015234 RLG00000016579 RLG00000020758
rosa_multiflora	Rmu_co8298683.1_g000001 Rmu_sc0002152.1_g000014 Rmu_sc0004132.1_g000004 Rmu_sc0004879.1_g000005 Rmu_sc0005866.1_g000014 Rmu_sc0010178.1_g000001 Rmu_sc0029797.1_g000001 Rmu_sc0032697.1_g000001 Rmu_sc0034117.1_g000001 Rmu_ssc0000233.1_g000066
rosa_roxburghii	Rroxscaffold_3G00221410 Rroxscaffold_3G00221420
rosa_rugosa	Rorug03G0157600 Rorug05G0148200 Rorug05G0232900 Rorug05G0238700 Rorug07G0324200.1
rosa_samantha	Rh1BG208000 Rh1DG234700 Rh2AG003700 Rh2AG216800 Rh2DG222500 Rh3AG161900 Rh3AG329400 Rh3BG186700 Rh3CG176900 Rh3DG308000 Rh4AG125400 Rh4AG152700 Rh4BG154900 Rh4CG133600 Rh4DG112900 Rh5AG299600 Rh7AG465300 Rh7AG479200 Rh7BG451800 Rh7CG251000 Rh7CG496300 Rh7DG343400 Rh7DG463900
rosa_wichuraiana	Rw7G040000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	35, 449
AasI	GACNNNNNNGTC	1 cut(s)	17
AatII	GACGTC	1 cut(s)	21
Acc36I	ACCTGC	2 cut(s)	35, 449
AccB1I	GGYRCC	1 cut(s)	200
AccII	CGCG	1 cut(s)	65
AciI	CCGC	6 cut(s)	33, 39, 163, 216, 519, 628
AclWI	GGATC	3 cut(s)	47, 77, 558
AcyI	GRCGYC	3 cut(s)	18, 201, 600
AfaI	GTAC	2 cut(s)	324, 572
AfiI	CCNNNNNNNGG	2 cut(s)	276, 364
AgsI	TTSAA	3 cut(s)	310, 484, 577
AjiI	CACGTC	1 cut(s)	496
AjnI	CCWGG	1 cut(s)	357
AluBI	AGCT	6 cut(s)	157, 242, 262, 432, 491, 510
AluI	AGCT	6 cut(s)	157, 242, 262, 432, 491, 510
Alw26I	GTCTC	1 cut(s)	416
AlwI	GGATC	3 cut(s)	47, 77, 558
Ama87I	CYCGRG	1 cut(s)	417
AoxI	GGCC	4 cut(s)	205, 217, 355, 360
ApeKI	GCWGC	1 cut(s)	630
ArsI	GACNNNNNNTTYG	2 cut(s)	578, 610
AspLEI	GCGC	3 cut(s)	65, 67, 203
AsuHPI	GGTGA	3 cut(s)	184, 430, 511
AvaI	CYCGRG	1 cut(s)	417
BanI	GGYRCC	1 cut(s)	200
BbsI	GAAGAC	1 cut(s)	220
BbvI	GCAGC	1 cut(s)	617
BccI	CCATC	3 cut(s)	203, 242, 530
BceAI	ACGGC	4 cut(s)	28, 121, 176, 209
BciT130I	CCWGG	1 cut(s)	359
BciVI	GTATCC	1 cut(s)	452
BcoDI	GTCTC	1 cut(s)	416
BfaI	CTAG	2 cut(s)	239, 243
BfoI	RGCGCY	1 cut(s)	204
BfuAI	ACCTGC	2 cut(s)	35, 449
BfuI	GTATCC	1 cut(s)	452
BglI	GCCNNNNNGGC	1 cut(s)	213
BisI	GCNGC	2 cut(s)	217, 631
BlsI	GCNGC	2 cut(s)	218, 632
BmcAI	AGTACT	1 cut(s)	572
Bme1390I	CCNGG	1 cut(s)	359
BmeT110I	CYCGRG	1 cut(s)	417
BmgBI	CACGTC	1 cut(s)	496
BmiI	GGNNCC	1 cut(s)	202
BmrFI	CCNGG	1 cut(s)	359
BmrI	ACTGGG	1 cut(s)	598
BmuI	ACTGGG	1 cut(s)	598
BpiI	GAAGAC	1 cut(s)	220
BsaHI	GRCGYC	3 cut(s)	18, 201, 600
BsaJI	CCNNGG	1 cut(s)	363
BsaWI	WCCGGW	1 cut(s)	55
Bsc4I	CCNNNNNNNGG	2 cut(s)	276, 364
Bse118I	RCCGGY	2 cut(s)	35, 203
Bse1I	ACTGG	3 cut(s)	358, 460, 593
Bse3DI	GCAATG	3 cut(s)	67, 342, 532
BseBI	CCWGG	1 cut(s)	359
BseDI	CCNNGG	1 cut(s)	363
BseGI	GGATG	2 cut(s)	234, 285
BseLI	CCNNNNNNNGG	2 cut(s)	276, 364
BseMI	GCAATG	3 cut(s)	67, 342, 532
BseMII	CTCAG	2 cut(s)	262, 289
BseNI	ACTGG	3 cut(s)	358, 460, 593
BsePI	GCGCGC	1 cut(s)	63
BseRI	GAGGAG	2 cut(s)	560, 600
BseXI	GCAGC	1 cut(s)	617
BsgI	GTGCAG	1 cut(s)	7
Bsh1236I	CGCG	1 cut(s)	65
BshFI	GGCC	4 cut(s)	207, 219, 357, 362
BshNI	GGYRCC	1 cut(s)	200
BsiHKCI	CYCGRG	1 cut(s)	417
BsiSI	CCGG	4 cut(s)	8, 36, 56, 204
BslFI	GGGAC	2 cut(s)	355, 587
BslI	CCNNNNNNNGG	2 cut(s)	276, 364
BsmAI	GTCTC	1 cut(s)	416
BsmFI	GGGAC	2 cut(s)	355, 587
BsnI	GGCC	4 cut(s)	207, 219, 357, 362
BsoBI	CYCGRG	1 cut(s)	417
Bsp143I	GATC	4 cut(s)	52, 82, 501, 563
BspACI	CCGC	6 cut(s)	33, 39, 163, 216, 519, 628
BspANI	GGCC	4 cut(s)	207, 219, 357, 362
BspCNI	CTCAG	2 cut(s)	261, 288
BspFNI	CGCG	1 cut(s)	65
BspLI	GGNNCC	1 cut(s)	202
BspMI	ACCTGC	2 cut(s)	35, 449
BspPI	GGATC	3 cut(s)	47, 77, 558
BspT107I	GGYRCC	1 cut(s)	200
BsrDI	GCAATG	3 cut(s)	67, 342, 532
BsrFI	RCCGGY	2 cut(s)	35, 203
BsrI	ACTGG	3 cut(s)	358, 460, 593
BssAI	RCCGGY	2 cut(s)	35, 203
BssECI	CCNNGG	1 cut(s)	363
BssHII	GCGCGC	1 cut(s)	63
BssMI	GATC	4 cut(s)	52, 82, 501, 563
BssNI	GRCGYC	3 cut(s)	18, 201, 600
BssT1I	CCWWGG	1 cut(s)	363
Bst2UI	CCWGG	1 cut(s)	359
Bst4CI	ACNGT	1 cut(s)	410
Bst6I	CTCTTC	2 cut(s)	118, 479
BstACI	GRCGYC	3 cut(s)	18, 201, 600
BstC8I	GCNNGC	5 cut(s)	37, 65, 205, 293, 386
BstDEI	CTNAG	3 cut(s)	248, 265, 275
BstENI	CCTNNNNNAGG	1 cut(s)	274
BstF5I	GGATG	2 cut(s)	234, 285
BstFNI	CGCG	1 cut(s)	65
BstH2I	RGCGCY	1 cut(s)	204
BstHHI	GCGC	3 cut(s)	65, 67, 203
BstKTI	GATC	4 cut(s)	55, 85, 504, 566
BstMAI	GTCTC	1 cut(s)	416
BstMBI	GATC	4 cut(s)	52, 82, 501, 563
BstMWI	GCNNNNNNNGC	4 cut(s)	21, 36, 69, 213
BstNI	CCWGG	1 cut(s)	359
BstNSI	RCATGY	1 cut(s)	291
BstSCI	CCNGG	1 cut(s)	357
BstUI	CGCG	1 cut(s)	65
BstV1I	GCAGC	1 cut(s)	617
BstV2I	GAAGAC	1 cut(s)	220
BstX2I	RGATCY	2 cut(s)	52, 563
BstYI	RGATCY	2 cut(s)	52, 563
BsuI	GTATCC	1 cut(s)	452
BsuRI	GGCC	4 cut(s)	207, 219, 357, 362
BtrI	CACGTC	1 cut(s)	496
BtsCI	GGATG	2 cut(s)	234, 285
BveI	ACCTGC	2 cut(s)	35, 449
Cac8I	GCNNGC	5 cut(s)	37, 65, 205, 293, 386
CfoI	GCGC	3 cut(s)	65, 67, 203
Cfr10I	RCCGGY	2 cut(s)	35, 203
CseI	GACGC	1 cut(s)	589
Csp6I	GTAC	2 cut(s)	323, 571
CviAII	CATG	2 cut(s)	288, 445
CviQI	GTAC	2 cut(s)	323, 571
DdeI	CTNAG	3 cut(s)	248, 265, 275
DinI	GGCGCC	1 cut(s)	202
DpnI	GATC	4 cut(s)	54, 84, 503, 565
DpnII	GATC	4 cut(s)	52, 82, 501, 563
DrdI	GACNNNNNNGTC	1 cut(s)	17
DseDI	GACNNNNNNGTC	1 cut(s)	17
Eam1104I	CTCTTC	2 cut(s)	118, 479
EarI	CTCTTC	2 cut(s)	118, 479
EciI	GGCGGA	1 cut(s)	22
Eco130I	CCWWGG	1 cut(s)	363
Eco32I	GATATC	1 cut(s)	399
Eco88I	CYCGRG	1 cut(s)	417
EcoNI	CCTNNNNNAGG	1 cut(s)	274
EcoRII	CCWGG	1 cut(s)	357
EcoRV	GATATC	1 cut(s)	399
EcoT14I	CCWWGG	1 cut(s)	363
EcoT22I	ATGCAT	1 cut(s)	534
EgeI	GGCGCC	1 cut(s)	202
EheI	GGCGCC	1 cut(s)	202
ErhI	CCWWGG	1 cut(s)	363
FaeI	CATG	2 cut(s)	291, 448
FaiI	YATR	4 cut(s)	289, 446, 527, 540
FaqI	GGGAC	2 cut(s)	355, 587
FatI	CATG	2 cut(s)	287, 444
FauI	CCCGC	2 cut(s)	156, 635
Fnu4HI	GCNGC	2 cut(s)	217, 631
FokI	GGATG	2 cut(s)	221, 292
Fsp4HI	GCNGC	2 cut(s)	217, 631
FspBI	CTAG	2 cut(s)	239, 243
GlaI	GCGC	3 cut(s)	64, 66, 202
GluI	GCNGC	2 cut(s)	217, 631
HaeII	RGCGCY	1 cut(s)	204
HaeIII	GGCC	4 cut(s)	207, 219, 357, 362
HapII	CCGG	4 cut(s)	8, 36, 56, 204
HgaI	GACGC	1 cut(s)	589
HhaI	GCGC	3 cut(s)	65, 67, 203
Hin1I	GRCGYC	3 cut(s)	18, 201, 600
Hin1II	CATG	2 cut(s)	291, 448
Hin6I	GCGC	3 cut(s)	63, 65, 201
HinP1I	GCGC	3 cut(s)	63, 65, 201
HinfI	GANTC	2 cut(s)	146, 246
HpaII	CCGG	4 cut(s)	8, 36, 56, 204
HphI	GGTGA	3 cut(s)	184, 430, 511
Hpy166II	GTNNAC	1 cut(s)	285
Hpy188I	TCNGA	4 cut(s)	82, 151, 251, 563
Hpy188III	TCNNGA	5 cut(s)	169, 277, 310, 349, 584
Hpy8I	GTNNAC	1 cut(s)	285
Hpy99I	CGWCG	3 cut(s)	20, 97, 100
HpyCH4III	ACNGT	1 cut(s)	410
HpyCH4IV	ACGT	4 cut(s)	18, 126, 344, 495
HpyCH4V	TGCA	6 cut(s)	24, 72, 444, 532, 542, 633
HpyF10VI	GCNNNNNNNGC	4 cut(s)	21, 36, 69, 213
HpyF3I	CTNAG	3 cut(s)	248, 265, 275
HpySE526I	ACGT	4 cut(s)	18, 126, 344, 495
Hsp92I	GRCGYC	3 cut(s)	18, 201, 600
Hsp92II	CATG	2 cut(s)	291, 448
HspAI	GCGC	3 cut(s)	63, 65, 201
KasI	GGCGCC	1 cut(s)	200
KroI	GCCGGC	2 cut(s)	35, 203
KroNI	GCCGGC	2 cut(s)	37, 205
Kzo9I	GATC	4 cut(s)	52, 82, 501, 563
LmnI	GCTCC	1 cut(s)	35
Lsp1109I	GCAGC	1 cut(s)	617
MaeI	CTAG	2 cut(s)	239, 243
MaeII	ACGT	4 cut(s)	18, 126, 344, 495
MaeIII	GTNAC	2 cut(s)	41, 169
MalI	GATC	4 cut(s)	54, 84, 503, 565
MboI	GATC	4 cut(s)	52, 82, 501, 563
MboII	GAAGA	5 cut(s)	62, 105, 220, 388, 496
MflI	RGATCY	2 cut(s)	52, 563
MluCI	AATT	1 cut(s)	479
Mly113I	GGCGCC	1 cut(s)	201
MlyI	GAGTC	1 cut(s)	240
MnlI	CCTC	9 cut(s)	97, 121, 218, 230, 280, 538, 543, 618, 621
Mph1103I	ATGCAT	1 cut(s)	534
MreI	CGCCGGCG	1 cut(s)	35
MroNI	GCCGGC	2 cut(s)	35, 203
MseI	TTAA	2 cut(s)	183, 643
MslI	CAYNNNNRTG	3 cut(s)	443, 527, 537
MspA1I	CMGCKG	1 cut(s)	630
MspI	CCGG	4 cut(s)	8, 36, 56, 204
MspR9I	CCNGG	1 cut(s)	359
MvaI	CCWGG	1 cut(s)	359
MvnI	CGCG	1 cut(s)	65
MwoI	GCNNNNNNNGC	4 cut(s)	21, 36, 69, 213
NaeI	GCCGGC	2 cut(s)	37, 205
NarI	GGCGCC	1 cut(s)	201
NdeII	GATC	4 cut(s)	52, 82, 501, 563
NgoMIV	GCCGGC	2 cut(s)	35, 203
NlaIII	CATG	2 cut(s)	291, 448
NlaIV	GGNNCC	1 cut(s)	202
NmuCI	GTSAC	2 cut(s)	41, 169
NsiI	ATGCAT	1 cut(s)	534
NspI	RCATGY	1 cut(s)	291
PaeR7I	CTCGAG	1 cut(s)	417
PaqCI	CACCTGC	2 cut(s)	35, 449
PauI	GCGCGC	1 cut(s)	63
PdiI	GCCGGC	2 cut(s)	37, 205
PfeI	GAWTC	1 cut(s)	146
PkrI	GCNGC	2 cut(s)	218, 632
PleI	GAGTC	1 cut(s)	240
PluTI	GGCGCC	1 cut(s)	204
PpsI	GAGTC	1 cut(s)	240
Psp6I	CCWGG	1 cut(s)	357
PspGI	CCWGG	1 cut(s)	357
PspN4I	GGNNCC	1 cut(s)	202
PspXI	VCTCGAGB	1 cut(s)	417
PsuI	RGATCY	2 cut(s)	52, 563
PteI	GCGCGC	1 cut(s)	63
RsaI	GTAC	2 cut(s)	324, 572
RsaNI	GTAC	2 cut(s)	323, 571
RseI	CAYNNNNRTG	3 cut(s)	443, 527, 537
SaqAI	TTAA	2 cut(s)	183, 643
SatI	GCNGC	2 cut(s)	217, 631
Sau3AI	GATC	4 cut(s)	52, 82, 501, 563
ScaI	AGTACT	1 cut(s)	572
SchI	GAGTC	1 cut(s)	240
ScrFI	CCNGG	1 cut(s)	359
SfoI	GGCGCC	1 cut(s)	202
Sfr274I	CTCGAG	1 cut(s)	417
SgrAI	CRCCGGYG	1 cut(s)	35
SlaI	CTCGAG	1 cut(s)	417
SmiMI	CAYNNNNRTG	3 cut(s)	443, 527, 537
SmlI	CTYRAG	1 cut(s)	417
SmoI	CTYRAG	1 cut(s)	417
Sse9I	AATT	1 cut(s)	479
SsiI	CCGC	6 cut(s)	33, 39, 163, 216, 519, 628
SspDI	GGCGCC	1 cut(s)	200
SspMI	CTAG	2 cut(s)	239, 243
StyD4I	CCNGG	1 cut(s)	357
StyI	CCWWGG	1 cut(s)	363
TaaI	ACNGT	1 cut(s)	410
TaiI	ACGT	4 cut(s)	21, 129, 347, 498
TaqI	TCGA	2 cut(s)	179, 418
TasI	AATT	1 cut(s)	479
TatI	WGTACW	1 cut(s)	570
TauI	GCSGC	1 cut(s)	219
TfiI	GAWTC	1 cut(s)	146
Tru1I	TTAA	2 cut(s)	183, 643
Tru9I	TTAA	2 cut(s)	183, 643
TseFI	GTSAC	2 cut(s)	41, 169
TseI	GCWGC	1 cut(s)	630
Tsp45I	GTSAC	2 cut(s)	41, 169
TspGWI	ACGGA	1 cut(s)	81
XagI	CCTNNNNNAGG	1 cut(s)	274
XceI	RCATGY	1 cut(s)	291
XhoI	CTCGAG	1 cut(s)	417
XspI	CTAG	2 cut(s)	239, 243
ZraI	GACGTC	1 cut(s)	19
ZrmI	AGTACT	1 cut(s)	572
Zsp2I	ATGCAT	1 cut(s)	534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.