Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001014

Physical Location & Seq

Genomic Coordinates Reverse (-)

15545082 .. 15550479

Gene Structure 5398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG176900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGTCGCCAGACTGCGACGTCTGCACCTGCTGCGCTTGCCAGAATGGCGGCTCCAACGTTGATCACGCCGAAGATCTGGTATGCGCGCATTACTGGAAATCTGATCCCTCTCCATCGTCGTTTTGCTATTCCTCTTCAGTCAAATACGTTCCTGTGCCGTCGAGCGATTCCAAGAAGCTACGGCGGGTCGTGACTGCTTTGATTAAGGGTTTCACCATCGGCGCCGGCCTCAAAGGCTGCCTCGCCGTCTTCTCCATCCTAGCTAAACTCAGAAAGAGAAAGCTCTTAGCCTCTCTTAGCACTGAGGGTGCGATTATGAATAATGAAGCAATTGTTGCTATTTTGAACGAGACCTTGAGATATGGTCTGTTTCTTGGGACTTTTGCAGGCATATTTGTTTCAGTGGATGAGATTATTGCTTCTTTGGGAGGCCACCGTAGGCATTTCAGGACAGCTAAGTGGAGGGCTTTGTTAGCAGGGCTTATAGCAGGACCGTCTATGGTTCTTACCGGGCATAACACGCAGCATACGTGCTTGGCTGTATACATACTTATGAGTGCTGCCGTGTTGGCCACGCGTTGTGGGATTAAAAGCAAACGGTTTGGTCGTGTTTGTAGACCTCTCACTTGGAAGCACGGTGACGTTTTCCTTATGTGTCTCTCCTCTTCGCAAATTCTAAAGATGACTCCATCTGATGAACCATTAAAAGGGATTTCACAGTTTGTTGGAGCTTCAACAGGAACTTGGAATCTTAAAATCCCTGTCAAAGACACAATAAGTGATGGTCATGGTCACAATTCTCCTCCTCCGAGAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TMEM135_C_rich

Protein Analysis

272

Amino Acids

29.27

Weight (kDa)

9.4

Isoelectric Point (pI)

43.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34630 AT1G34630 AT1G34630 AT1G34630 AT1G34630
fragaria_vesca	FvH4_5g37331 FvH4_5g37331
malus_domestica	MD08G1182800.v1.1
prunus_persica	Prupe.1G517000_v2.0.a1 Prupe.1G517000_v2.0.a1
pyrus_communis	pycom08g15660
rosa_chinensis	RchiOBHm_Chr3g0470741 RchiOBHm_Chr4g0408951 RchiOBHm_Chr7g0238981
rosa_laevigata	RLG00000000793 RLG00000007867 RLG00000014356 RLG00000015234 RLG00000016579 RLG00000020758
rosa_multiflora	Rmu_co8298683.1_g000001 Rmu_sc0002152.1_g000014 Rmu_sc0004132.1_g000004 Rmu_sc0004879.1_g000005 Rmu_sc0005866.1_g000014 Rmu_sc0010178.1_g000001 Rmu_sc0029797.1_g000001 Rmu_sc0032697.1_g000001 Rmu_sc0034117.1_g000001 Rmu_ssc0000233.1_g000066
rosa_roxburghii	Rroxscaffold_3G00221410 Rroxscaffold_3G00221420
rosa_rugosa	Rorug03G0157600 Rorug05G0148200 Rorug05G0232900 Rorug05G0238700 Rorug07G0324200.1
rosa_samantha	Rh1BG208000 Rh1DG234700 Rh2AG003700 Rh2AG216800 Rh2DG222500 Rh3AG161900 Rh3AG329400 Rh3BG186700 Rh3CG176900 Rh3DG308000 Rh4AG125400 Rh4AG152700 Rh4BG154900 Rh4CG133600 Rh4DG112900 Rh5AG299600 Rh7AG465300 Rh7AG479200 Rh7BG451800 Rh7CG251000 Rh7CG496300 Rh7DG343400 Rh7DG463900
rosa_wichuraiana	Rw7G040000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	35
AasI	GACNNNNNNGTC	1 cut(s)	17
AatII	GACGTC	1 cut(s)	21
Acc36I	ACCTGC	1 cut(s)	35
AccB1I	GGYRCC	1 cut(s)	221
AccI	GTMKAC	2 cut(s)	543, 616
AccII	CGCG	2 cut(s)	86, 577
AciI	CCGC	2 cut(s)	48, 184
AclI	AACGTT	1 cut(s)	57
AclWI	GGATC	1 cut(s)	98
AcoI	YGGCCR	1 cut(s)	570
AcsI	RAATTY	1 cut(s)	672
AcuI	CTGAAG	1 cut(s)	120
AcyI	GRCGYC	2 cut(s)	18, 222
AfiI	CCNNNNNNNGG	1 cut(s)	707
AflIII	ACRYGT	1 cut(s)	575
AgsI	TTSAA	2 cut(s)	346, 735
AluBI	AGCT	6 cut(s)	178, 263, 283, 455, 731, 815
AluI	AGCT	6 cut(s)	178, 263, 283, 455, 731, 815
Alw26I	GTCTC	2 cut(s)	344, 662
AlwI	GGATC	1 cut(s)	98
AoxI	GGCC	3 cut(s)	226, 430, 570
ApeKI	GCWGC	4 cut(s)	30, 237, 523, 560
ApoI	RAATTY	1 cut(s)	672
AspLEI	GCGC	4 cut(s)	35, 86, 88, 224
AspS9I	GGNCC	1 cut(s)	491
AsuC2I	CCSGG	1 cut(s)	511
AsuHPI	GGTGA	2 cut(s)	205, 650
AvaII	GGWCC	1 cut(s)	491
BalI	TGGCCA	1 cut(s)	572
BanI	GGYRCC	1 cut(s)	221
BbsI	GAAGAC	1 cut(s)	241
BbvI	GCAGC	4 cut(s)	17, 224, 535, 547
BccI	CCATC	5 cut(s)	121, 224, 263, 697, 776
BceAI	ACGGC	4 cut(s)	142, 197, 230, 548
BclI	TGATCA	1 cut(s)	61
BcnI	CCSGG	1 cut(s)	511
BcoDI	GTCTC	2 cut(s)	344, 662
BfaI	CTAG	1 cut(s)	260
BfoI	RGCGCY	1 cut(s)	225
BfuAI	ACCTGC	1 cut(s)	35
BglI	GCCNNNNNGGC	3 cut(s)	45, 234, 569
BglII	AGATCT	1 cut(s)	73
BisI	GCNGC	5 cut(s)	31, 49, 238, 524, 561
BlsI	GCNGC	5 cut(s)	32, 50, 239, 525, 562
Bme1390I	CCNGG	1 cut(s)	511
Bme18I	GGWCC	1 cut(s)	491
BmgT120I	GGNCC	1 cut(s)	491
BmiI	GGNNCC	2 cut(s)	52, 223
BmrFI	CCNGG	1 cut(s)	511
BpiI	GAAGAC	1 cut(s)	241
BpuEI	CTTGAG	1 cut(s)	376
BpuMI	CCSGG	1 cut(s)	511
BsaAI	YACGTR	1 cut(s)	531
BsaHI	GRCGYC	2 cut(s)	18, 222
BsaI	GGTCTC	1 cut(s)	344
Bsc4I	CCNNNNNNNGG	1 cut(s)	707
Bse118I	RCCGGY	1 cut(s)	224
Bse1I	ACTGG	1 cut(s)	98
BseGI	GGATG	2 cut(s)	255, 412
BseLI	CCNNNNNNNGG	1 cut(s)	707
BseMII	CTCAG	2 cut(s)	283, 294
BseNI	ACTGG	1 cut(s)	98
BsePI	GCGCGC	1 cut(s)	84
BseRI	GAGGAG	3 cut(s)	652, 792, 795
BseXI	GCAGC	4 cut(s)	17, 224, 535, 547
BsgI	GTGCAG	1 cut(s)	7
Bsh1236I	CGCG	2 cut(s)	86, 577
BshFI	GGCC	3 cut(s)	228, 432, 572
BshNI	GGYRCC	1 cut(s)	221
BsiSI	CCGG	2 cut(s)	225, 510
BslFI	GGGAC	1 cut(s)	391
BslI	CCNNNNNNNGG	1 cut(s)	707
BsmAI	GTCTC	2 cut(s)	344, 662
BsmFI	GGGAC	1 cut(s)	391
BsnI	GGCC	3 cut(s)	228, 432, 572
Bso31I	GGTCTC	1 cut(s)	344
Bsp143I	GATC	3 cut(s)	61, 73, 103
BspACI	CCGC	2 cut(s)	48, 184
BspANI	GGCC	3 cut(s)	228, 432, 572
BspCNI	CTCAG	2 cut(s)	282, 295
BspFNI	CGCG	2 cut(s)	86, 577
BspLI	GGNNCC	2 cut(s)	52, 223
BspMI	ACCTGC	1 cut(s)	35
BspPI	GGATC	1 cut(s)	98
BspT107I	GGYRCC	1 cut(s)	221
BspTNI	GGTCTC	1 cut(s)	344
BsrFI	RCCGGY	1 cut(s)	224
BsrI	ACTGG	1 cut(s)	98
BssAI	RCCGGY	1 cut(s)	224
BssHII	GCGCGC	1 cut(s)	84
BssMI	GATC	3 cut(s)	61, 73, 103
BssNAI	GTATAC	1 cut(s)	544
BssNI	GRCGYC	2 cut(s)	18, 222
Bst1107I	GTATAC	1 cut(s)	544
Bst4CI	ACNGT	5 cut(s)	437, 495, 600, 638, 720
Bst6I	CTCTTC	2 cut(s)	139, 670
BstACI	GRCGYC	2 cut(s)	18, 222
BstAPI	GCANNNNNTGC	2 cut(s)	30, 335
BstBAI	YACGTR	1 cut(s)	531
BstC8I	GCNNGC	4 cut(s)	37, 86, 226, 388
BstDEI	CTNAG	5 cut(s)	269, 286, 296, 303, 456
BstF5I	GGATG	2 cut(s)	255, 412
BstFNI	CGCG	2 cut(s)	86, 577
BstH2I	RGCGCY	1 cut(s)	225
BstHHI	GCGC	4 cut(s)	35, 86, 88, 224
BstKTI	GATC	3 cut(s)	64, 76, 106
BstMAI	GTCTC	2 cut(s)	344, 662
BstMBI	GATC	3 cut(s)	61, 73, 103
BstMWI	GCNNNNNNNGC	9 cut(s)	21, 30, 36, 45, 234, 335, 473, 520, 569
BstSCI	CCNGG	1 cut(s)	509
BstUI	CGCG	2 cut(s)	86, 577
BstV1I	GCAGC	4 cut(s)	17, 224, 535, 547
BstV2I	GAAGAC	1 cut(s)	241
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
BstZ17I	GTATAC	1 cut(s)	544
BsuRI	GGCC	3 cut(s)	228, 432, 572
BtsCI	GGATG	2 cut(s)	255, 412
BtsIMutI	CAGTG	2 cut(s)	300, 408
BveI	ACCTGC	1 cut(s)	35
Cac8I	GCNNGC	4 cut(s)	37, 86, 226, 388
CfoI	GCGC	4 cut(s)	35, 86, 88, 224
Cfr10I	RCCGGY	1 cut(s)	224
Cfr13I	GGNCC	1 cut(s)	491
CviAII	CATG	1 cut(s)	788
DdeI	CTNAG	5 cut(s)	269, 286, 296, 303, 456
DinI	GGCGCC	1 cut(s)	223
DpnI	GATC	3 cut(s)	63, 75, 105
DpnII	GATC	3 cut(s)	61, 73, 103
DrdI	GACNNNNNNGTC	1 cut(s)	17
DseDI	GACNNNNNNGTC	1 cut(s)	17
EaeI	YGGCCR	1 cut(s)	570
Eam1104I	CTCTTC	2 cut(s)	139, 670
EarI	CTCTTC	2 cut(s)	139, 670
Eco31I	GGTCTC	1 cut(s)	344
Eco47I	GGWCC	1 cut(s)	491
Eco57I	CTGAAG	1 cut(s)	120
EgeI	GGCGCC	1 cut(s)	223
EheI	GGCGCC	1 cut(s)	223
FaeI	CATG	1 cut(s)	791
FaqI	GGGAC	1 cut(s)	391
FatI	CATG	1 cut(s)	787
FauI	CCCGC	1 cut(s)	177
FbaI	TGATCA	1 cut(s)	61
FblI	GTMKAC	2 cut(s)	543, 616
Fnu4HI	GCNGC	5 cut(s)	31, 49, 238, 524, 561
FokI	GGATG	2 cut(s)	242, 419
Fsp4HI	GCNGC	5 cut(s)	31, 49, 238, 524, 561
FspBI	CTAG	1 cut(s)	260
GlaI	GCGC	4 cut(s)	34, 85, 87, 223
GluI	GCNGC	5 cut(s)	31, 49, 238, 524, 561
HaeII	RGCGCY	1 cut(s)	225
HaeIII	GGCC	3 cut(s)	228, 432, 572
HapII	CCGG	2 cut(s)	225, 510
HhaI	GCGC	4 cut(s)	35, 86, 88, 224
Hin1I	GRCGYC	2 cut(s)	18, 222
Hin1II	CATG	1 cut(s)	791
Hin6I	GCGC	4 cut(s)	33, 84, 86, 222
HinP1I	GCGC	4 cut(s)	33, 84, 86, 222
HinfI	GANTC	3 cut(s)	167, 685, 748
HpaII	CCGG	2 cut(s)	225, 510
HphI	GGTGA	2 cut(s)	205, 650
Hpy166II	GTNNAC	2 cut(s)	544, 617
Hpy188I	TCNGA	4 cut(s)	103, 272, 694, 810
Hpy188III	TCNNGA	2 cut(s)	190, 448
Hpy8I	GTNNAC	2 cut(s)	544, 617
Hpy99I	CGWCG	3 cut(s)	20, 121, 163
HpyCH4III	ACNGT	5 cut(s)	437, 495, 600, 638, 720
HpyCH4IV	ACGT	5 cut(s)	18, 57, 147, 530, 642
HpyCH4V	TGCA	2 cut(s)	24, 386
HpyF10VI	GCNNNNNNNGC	9 cut(s)	21, 30, 36, 45, 234, 335, 473, 520, 569
HpyF3I	CTNAG	5 cut(s)	269, 286, 296, 303, 456
HpySE526I	ACGT	5 cut(s)	18, 57, 147, 530, 642
Hsp92I	GRCGYC	2 cut(s)	18, 222
Hsp92II	CATG	1 cut(s)	791
HspAI	GCGC	4 cut(s)	33, 84, 86, 222
KasI	GGCGCC	1 cut(s)	221
KroI	GCCGGC	1 cut(s)	224
KroNI	GCCGGC	1 cut(s)	226
Ksp22I	TGATCA	1 cut(s)	61
Kzo9I	GATC	3 cut(s)	61, 73, 103
LmnI	GCTCC	2 cut(s)	56, 728
Lsp1109I	GCAGC	4 cut(s)	17, 224, 535, 547
MaeI	CTAG	1 cut(s)	260
MaeII	ACGT	5 cut(s)	18, 57, 147, 530, 642
MaeIII	GTNAC	3 cut(s)	190, 638, 791
MalI	GATC	3 cut(s)	63, 75, 105
MboI	GATC	3 cut(s)	61, 73, 103
MboII	GAAGA	4 cut(s)	83, 126, 241, 657
MfeI	CAATTG	1 cut(s)	330
MflI	RGATCY	1 cut(s)	73
MlsI	TGGCCA	1 cut(s)	572
MluCI	AATT	3 cut(s)	330, 672, 796
MluI	ACGCGT	1 cut(s)	575
MluNI	TGGCCA	1 cut(s)	572
Mly113I	GGCGCC	1 cut(s)	222
MlyI	GAGTC	1 cut(s)	679
MmeI	TCCRAC	2 cut(s)	78, 706
Mox20I	TGGCCA	1 cut(s)	572
MroNI	GCCGGC	1 cut(s)	224
MscI	TGGCCA	1 cut(s)	572
MseI	TTAA	5 cut(s)	204, 588, 704, 753, 817
MslI	CAYNNNNRTG	1 cut(s)	551
Msp20I	TGGCCA	1 cut(s)	572
MspI	CCGG	2 cut(s)	225, 510
MspR9I	CCNGG	1 cut(s)	511
MunI	CAATTG	1 cut(s)	330
MvnI	CGCG	2 cut(s)	86, 577
MwoI	GCNNNNNNNGC	9 cut(s)	21, 30, 36, 45, 234, 335, 473, 520, 569
NaeI	GCCGGC	1 cut(s)	226
NarI	GGCGCC	1 cut(s)	222
NciI	CCSGG	1 cut(s)	511
NdeII	GATC	3 cut(s)	61, 73, 103
NgoMIV	GCCGGC	1 cut(s)	224
NlaIII	CATG	1 cut(s)	791
NlaIV	GGNNCC	2 cut(s)	52, 223
NmuCI	GTSAC	3 cut(s)	190, 638, 791
PaqCI	CACCTGC	1 cut(s)	35
PauI	GCGCGC	1 cut(s)	84
PcsI	WCGNNNNNNNCGW	2 cut(s)	527, 604
PdiI	GCCGGC	1 cut(s)	226
PfeI	GAWTC	2 cut(s)	167, 748
PkrI	GCNGC	5 cut(s)	32, 50, 239, 525, 562
PleI	GAGTC	1 cut(s)	679
PluTI	GGCGCC	1 cut(s)	225
PpsI	GAGTC	1 cut(s)	679
Ppu21I	YACGTR	1 cut(s)	531
Psp1406I	AACGTT	1 cut(s)	57
PspN4I	GGNNCC	2 cut(s)	52, 223
PspPI	GGNCC	1 cut(s)	491
PsuI	RGATCY	1 cut(s)	73
PteI	GCGCGC	1 cut(s)	84
RseI	CAYNNNNRTG	1 cut(s)	551
SaqAI	TTAA	5 cut(s)	204, 588, 704, 753, 817
SatI	GCNGC	5 cut(s)	31, 49, 238, 524, 561
Sau3AI	GATC	3 cut(s)	61, 73, 103
Sau96I	GGNCC	1 cut(s)	491
SchI	GAGTC	1 cut(s)	679
ScrFI	CCNGG	1 cut(s)	511
SfoI	GGCGCC	1 cut(s)	223
SinI	GGWCC	1 cut(s)	491
SmiMI	CAYNNNNRTG	1 cut(s)	551
SmlI	CTYRAG	1 cut(s)	355
SmoI	CTYRAG	1 cut(s)	355
Sse9I	AATT	3 cut(s)	330, 672, 796
SsiI	CCGC	2 cut(s)	48, 184
SspDI	GGCGCC	1 cut(s)	221
SspMI	CTAG	1 cut(s)	260
StyD4I	CCNGG	1 cut(s)	509
TaaI	ACNGT	5 cut(s)	437, 495, 600, 638, 720
TaiI	ACGT	5 cut(s)	21, 60, 150, 533, 645
TaqI	TCGA	1 cut(s)	161
TasI	AATT	3 cut(s)	330, 672, 796
TauI	GCSGC	1 cut(s)	51
TfiI	GAWTC	2 cut(s)	167, 748
Tru1I	TTAA	5 cut(s)	204, 588, 704, 753, 817
Tru9I	TTAA	5 cut(s)	204, 588, 704, 753, 817
TscAI	CASTG	2 cut(s)	307, 408
TseFI	GTSAC	3 cut(s)	190, 638, 791
TseI	GCWGC	4 cut(s)	30, 237, 523, 560
Tsp45I	GTSAC	3 cut(s)	190, 638, 791
TspDTI	ATGAA	3 cut(s)	332, 339, 711
TspRI	CASTG	2 cut(s)	307, 408
VpaK11BI	GGWCC	1 cut(s)	491
XapI	RAATTY	1 cut(s)	672
XmiI	GTMKAC	2 cut(s)	543, 616
XspI	CTAG	1 cut(s)	260
ZraI	GACGTC	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.