Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001014

Physical Location & Seq

Genomic Coordinates Forward (+)

32603362 .. 32605126

Gene Structure 1765 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG208000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGTTGCTGGACGGCGACGTCTGCACCTGCTGCGCCGGCGAGAATGGCGGCTCCAACGGTGATCACGCCGAAGATCTGGTGTGCGCGCATTACAGGAAATCCGATCCCTCTCCGTCGTCATTTTGCTATTCCTCTTCGCTCAAATACGTTCCTGTGCCGTCGAGCGATTCTGAGAAGCTACGCCGGGTCGTGACTGCTTTGATTAAGGGTTTCACTATCGGCGCCGGCCTCAAAGGCGGCCTCGCTGTCTTCTCCATCCTAGCTAGACTCAGAAAGAGAAAGCTCTTAGCCTCTCTCAGGACTGAGGGTGCGATTACGAATAATGAAGCAATTGTTACTGTTTTGAAGGAGACCTTGAGATATGGTCTGTTTCTTGGGACTTTTGCAGGCACATTTGTTTCAGTGGATGAGATTATTGCTTCTTTGGGAGGCCACCGTAGGCATGTTCCTTGTTCTTTTATATTCAGCTTCGCATGGCTTATAGCAGGACCGTCTATGCTTCTTACCGGGCATAACACGCAGCATATGAGCTTGGCTGTATACATACTTATGCGTGCTGCCGTGTTGGCCACGCGTTGTGGGATTAAAAGCAAACGGTTTGGTCGTGTTTGTAGACCTCTCACTTGGAAGCACGGTGACATTTTCCTTATGTGTCTCTCCTCTTCGCAAATTCTGTCTGCTTACATATTGAAGCAGGAGAGTTTGCCTCCATCATATAAATTCTTTCTCAACAAACATGGGGGAAAGGATATCACAATTTTGCAAGGTGTTAAAGAGATTATGTCTGGAAATAATTGGAAAAGACTTGATAATGTTTTAGGGTGTGAAAATTACTCTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TMEM135_C_rich

Protein Analysis

280

Amino Acids

30.62

Weight (kDa)

9.39

Isoelectric Point (pI)

44.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34630 AT1G34630 AT1G34630 AT1G34630 AT1G34630
fragaria_vesca	FvH4_5g37331 FvH4_5g37331
malus_domestica	MD08G1182800.v1.1
prunus_persica	Prupe.1G517000_v2.0.a1 Prupe.1G517000_v2.0.a1
pyrus_communis	pycom08g15660
rosa_chinensis	RchiOBHm_Chr3g0470741 RchiOBHm_Chr4g0408951 RchiOBHm_Chr7g0238981
rosa_laevigata	RLG00000000793 RLG00000007867 RLG00000014356 RLG00000015234 RLG00000016579 RLG00000020758
rosa_multiflora	Rmu_co8298683.1_g000001 Rmu_sc0002152.1_g000014 Rmu_sc0004132.1_g000004 Rmu_sc0004879.1_g000005 Rmu_sc0005866.1_g000014 Rmu_sc0010178.1_g000001 Rmu_sc0029797.1_g000001 Rmu_sc0032697.1_g000001 Rmu_sc0034117.1_g000001 Rmu_ssc0000233.1_g000066
rosa_roxburghii	Rroxscaffold_3G00221410 Rroxscaffold_3G00221420
rosa_rugosa	Rorug03G0157600 Rorug05G0148200 Rorug05G0232900 Rorug05G0238700 Rorug07G0324200.1
rosa_samantha	Rh1BG208000 Rh1DG234700 Rh2AG003700 Rh2AG216800 Rh2DG222500 Rh3AG161900 Rh3AG329400 Rh3BG186700 Rh3CG176900 Rh3DG308000 Rh4AG125400 Rh4AG152700 Rh4BG154900 Rh4CG133600 Rh4DG112900 Rh5AG299600 Rh7AG465300 Rh7AG479200 Rh7BG451800 Rh7CG251000 Rh7CG496300 Rh7DG343400 Rh7DG463900
rosa_wichuraiana	Rw7G040000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	35
AasI	GACNNNNNNGTC	1 cut(s)	17
AatII	GACGTC	1 cut(s)	21
Acc36I	ACCTGC	1 cut(s)	35
AccB1I	GGYRCC	1 cut(s)	221
AccI	GTMKAC	2 cut(s)	540, 613
AccII	CGCG	2 cut(s)	86, 574
AciI	CCGC	2 cut(s)	48, 237
AclWI	GGATC	1 cut(s)	98
AcoI	YGGCCR	1 cut(s)	567
AcsI	RAATTY	2 cut(s)	669, 719
AcyI	GRCGYC	2 cut(s)	18, 222
AfiI	CCNNNNNNNGG	1 cut(s)	297
AflIII	ACRYGT	1 cut(s)	572
AgsI	TTSAA	2 cut(s)	346, 691
AluBI	AGCT	5 cut(s)	178, 263, 283, 468, 531
AluI	AGCT	5 cut(s)	178, 263, 283, 468, 531
Alw26I	GTCTC	2 cut(s)	344, 659
AlwI	GGATC	1 cut(s)	98
AoxI	GGCC	4 cut(s)	226, 238, 430, 567
ApeKI	GCWGC	3 cut(s)	30, 520, 557
ApoI	RAATTY	2 cut(s)	669, 719
AspLEI	GCGC	4 cut(s)	35, 86, 88, 224
AspS9I	GGNCC	1 cut(s)	488
AsuC2I	CCSGG	2 cut(s)	185, 508
AsuHPI	GGTGA	2 cut(s)	71, 647
AvaII	GGWCC	1 cut(s)	488
BalI	TGGCCA	1 cut(s)	569
BanI	GGYRCC	1 cut(s)	221
BbsI	GAAGAC	1 cut(s)	241
BbvI	GCAGC	3 cut(s)	17, 532, 544
BccI	CCATC	2 cut(s)	263, 718
BceAI	ACGGC	3 cut(s)	28, 142, 545
BclI	TGATCA	1 cut(s)	61
BcnI	CCSGG	2 cut(s)	185, 508
BcoDI	GTCTC	2 cut(s)	344, 659
BfaI	CTAG	3 cut(s)	260, 264, 841
BfoI	RGCGCY	1 cut(s)	225
BfuAI	ACCTGC	1 cut(s)	35
BglI	GCCNNNNNGGC	2 cut(s)	234, 566
BglII	AGATCT	1 cut(s)	73
BisI	GCNGC	5 cut(s)	31, 49, 238, 521, 558
BlsI	GCNGC	5 cut(s)	32, 50, 239, 522, 559
Bme1390I	CCNGG	2 cut(s)	185, 508
Bme18I	GGWCC	1 cut(s)	488
BmgT120I	GGNCC	1 cut(s)	488
BmiI	GGNNCC	2 cut(s)	52, 223
BmrFI	CCNGG	2 cut(s)	185, 508
BpiI	GAAGAC	1 cut(s)	241
BplI	GAGNNNNNCTC	2 cut(s)	691, 723
BpuEI	CTTGAG	1 cut(s)	376
BpuMI	CCSGG	2 cut(s)	185, 508
BsaHI	GRCGYC	2 cut(s)	18, 222
BsaI	GGTCTC	1 cut(s)	344
Bsc4I	CCNNNNNNNGG	1 cut(s)	297
Bse118I	RCCGGY	2 cut(s)	35, 224
BseGI	GGATG	2 cut(s)	255, 412
BseLI	CCNNNNNNNGG	1 cut(s)	297
BseMII	CTCAG	4 cut(s)	162, 283, 294, 310
BsePI	GCGCGC	1 cut(s)	84
BseRI	GAGGAG	1 cut(s)	649
BseXI	GCAGC	3 cut(s)	17, 532, 544
BsgI	GTGCAG	1 cut(s)	7
Bsh1236I	CGCG	2 cut(s)	86, 574
BshFI	GGCC	4 cut(s)	228, 240, 432, 569
BshNI	GGYRCC	1 cut(s)	221
BsiSI	CCGG	4 cut(s)	36, 184, 225, 507
BslFI	GGGAC	1 cut(s)	391
BslI	CCNNNNNNNGG	1 cut(s)	297
BsmAI	GTCTC	2 cut(s)	344, 659
BsmFI	GGGAC	1 cut(s)	391
BsnI	GGCC	4 cut(s)	228, 240, 432, 569
Bso31I	GGTCTC	1 cut(s)	344
Bsp143I	GATC	3 cut(s)	61, 73, 103
BspACI	CCGC	2 cut(s)	48, 237
BspANI	GGCC	4 cut(s)	228, 240, 432, 569
BspCNI	CTCAG	4 cut(s)	163, 282, 295, 309
BspFNI	CGCG	2 cut(s)	86, 574
BspLI	GGNNCC	2 cut(s)	52, 223
BspMI	ACCTGC	1 cut(s)	35
BspPI	GGATC	1 cut(s)	98
BspT107I	GGYRCC	1 cut(s)	221
BspTNI	GGTCTC	1 cut(s)	344
BsrFI	RCCGGY	2 cut(s)	35, 224
BssAI	RCCGGY	2 cut(s)	35, 224
BssHII	GCGCGC	1 cut(s)	84
BssMI	GATC	3 cut(s)	61, 73, 103
BssNAI	GTATAC	1 cut(s)	541
BssNI	GRCGYC	2 cut(s)	18, 222
Bst1107I	GTATAC	1 cut(s)	541
Bst4CI	ACNGT	6 cut(s)	59, 340, 437, 492, 597, 635
Bst6I	CTCTTC	2 cut(s)	139, 667
BstACI	GRCGYC	2 cut(s)	18, 222
BstAPI	GCANNNNNTGC	1 cut(s)	30
BstC8I	GCNNGC	5 cut(s)	37, 86, 226, 388, 555
BstDEI	CTNAG	5 cut(s)	171, 269, 286, 296, 303
BstENI	CCTNNNNNAGG	1 cut(s)	295
BstF5I	GGATG	2 cut(s)	255, 412
BstFNI	CGCG	2 cut(s)	86, 574
BstH2I	RGCGCY	1 cut(s)	225
BstHHI	GCGC	4 cut(s)	35, 86, 88, 224
BstKTI	GATC	3 cut(s)	64, 76, 106
BstMAI	GTCTC	2 cut(s)	344, 659
BstMBI	GATC	3 cut(s)	61, 73, 103
BstMWI	GCNNNNNNNGC	7 cut(s)	21, 30, 36, 45, 234, 517, 566
BstNSI	RCATGY	1 cut(s)	446
BstSCI	CCNGG	2 cut(s)	183, 506
BstUI	CGCG	2 cut(s)	86, 574
BstV1I	GCAGC	3 cut(s)	17, 532, 544
BstV2I	GAAGAC	1 cut(s)	241
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
BstZ17I	GTATAC	1 cut(s)	541
BsuRI	GGCC	4 cut(s)	228, 240, 432, 569
BtsCI	GGATG	2 cut(s)	255, 412
BtsIMutI	CAGTG	1 cut(s)	408
BveI	ACCTGC	1 cut(s)	35
Cac8I	GCNNGC	5 cut(s)	37, 86, 226, 388, 555
CfoI	GCGC	4 cut(s)	35, 86, 88, 224
Cfr10I	RCCGGY	2 cut(s)	35, 224
Cfr13I	GGNCC	1 cut(s)	488
CviAII	CATG	3 cut(s)	443, 474, 737
DdeI	CTNAG	5 cut(s)	171, 269, 286, 296, 303
DinI	GGCGCC	1 cut(s)	223
DpnI	GATC	3 cut(s)	63, 75, 105
DpnII	GATC	3 cut(s)	61, 73, 103
DrdI	GACNNNNNNGTC	1 cut(s)	17
DseDI	GACNNNNNNGTC	1 cut(s)	17
EaeI	YGGCCR	1 cut(s)	567
Eam1104I	CTCTTC	2 cut(s)	139, 667
EarI	CTCTTC	2 cut(s)	139, 667
Eco31I	GGTCTC	1 cut(s)	344
Eco32I	GATATC	1 cut(s)	751
Eco47I	GGWCC	1 cut(s)	488
EcoNI	CCTNNNNNAGG	1 cut(s)	295
EcoRV	GATATC	1 cut(s)	751
EgeI	GGCGCC	1 cut(s)	223
EheI	GGCGCC	1 cut(s)	223
FaeI	CATG	3 cut(s)	446, 477, 740
FalI	AAGNNNNNCTT	2 cut(s)	338, 370
FaqI	GGGAC	1 cut(s)	391
FatI	CATG	3 cut(s)	442, 473, 736
FauNDI	CATATG	1 cut(s)	525
FbaI	TGATCA	1 cut(s)	61
FblI	GTMKAC	2 cut(s)	540, 613
Fnu4HI	GCNGC	5 cut(s)	31, 49, 238, 521, 558
FokI	GGATG	2 cut(s)	242, 419
Fsp4HI	GCNGC	5 cut(s)	31, 49, 238, 521, 558
FspBI	CTAG	3 cut(s)	260, 264, 841
GlaI	GCGC	4 cut(s)	34, 85, 87, 223
GluI	GCNGC	5 cut(s)	31, 49, 238, 521, 558
HaeII	RGCGCY	1 cut(s)	225
HaeIII	GGCC	4 cut(s)	228, 240, 432, 569
HapII	CCGG	4 cut(s)	36, 184, 225, 507
HhaI	GCGC	4 cut(s)	35, 86, 88, 224
Hin1I	GRCGYC	2 cut(s)	18, 222
Hin1II	CATG	3 cut(s)	446, 477, 740
Hin6I	GCGC	4 cut(s)	33, 84, 86, 222
HinP1I	GCGC	4 cut(s)	33, 84, 86, 222
HinfI	GANTC	2 cut(s)	167, 267
HpaII	CCGG	4 cut(s)	36, 184, 225, 507
HphI	GGTGA	2 cut(s)	71, 647
Hpy166II	GTNNAC	2 cut(s)	541, 614
Hpy188I	TCNGA	3 cut(s)	103, 172, 272
Hpy188III	TCNNGA	3 cut(s)	190, 298, 786
Hpy8I	GTNNAC	2 cut(s)	541, 614
Hpy99I	CGWCG	3 cut(s)	20, 118, 163
HpyAV	CCTTC	1 cut(s)	340
HpyCH4III	ACNGT	6 cut(s)	59, 340, 437, 492, 597, 635
HpyCH4IV	ACGT	2 cut(s)	18, 147
HpyCH4V	TGCA	3 cut(s)	24, 386, 763
HpyF10VI	GCNNNNNNNGC	7 cut(s)	21, 30, 36, 45, 234, 517, 566
HpyF3I	CTNAG	5 cut(s)	171, 269, 286, 296, 303
HpySE526I	ACGT	2 cut(s)	18, 147
Hsp92I	GRCGYC	2 cut(s)	18, 222
Hsp92II	CATG	3 cut(s)	446, 477, 740
HspAI	GCGC	4 cut(s)	33, 84, 86, 222
KasI	GGCGCC	1 cut(s)	221
KroI	GCCGGC	2 cut(s)	35, 224
KroNI	GCCGGC	2 cut(s)	37, 226
Ksp22I	TGATCA	1 cut(s)	61
Kzo9I	GATC	3 cut(s)	61, 73, 103
LmnI	GCTCC	1 cut(s)	56
Lsp1109I	GCAGC	3 cut(s)	17, 532, 544
MaeI	CTAG	3 cut(s)	260, 264, 841
MaeII	ACGT	2 cut(s)	18, 147
MaeIII	GTNAC	3 cut(s)	190, 334, 635
MalI	GATC	3 cut(s)	63, 75, 105
MboI	GATC	3 cut(s)	61, 73, 103
MboII	GAAGA	4 cut(s)	83, 126, 241, 654
MfeI	CAATTG	1 cut(s)	330
MflI	RGATCY	1 cut(s)	73
MlsI	TGGCCA	1 cut(s)	569
MluCI	AATT	6 cut(s)	330, 669, 719, 756, 793, 829
MluI	ACGCGT	1 cut(s)	572
MluNI	TGGCCA	1 cut(s)	569
Mly113I	GGCGCC	1 cut(s)	222
MlyI	GAGTC	1 cut(s)	261
MmeI	TCCRAC	1 cut(s)	78
Mox20I	TGGCCA	1 cut(s)	569
MreI	CGCCGGCG	1 cut(s)	35
MroNI	GCCGGC	2 cut(s)	35, 224
MscI	TGGCCA	1 cut(s)	569
MseI	TTAA	3 cut(s)	204, 585, 771
MslI	CAYNNNNRTG	1 cut(s)	548
Msp20I	TGGCCA	1 cut(s)	569
MspI	CCGG	4 cut(s)	36, 184, 225, 507
MspR9I	CCNGG	2 cut(s)	185, 508
MunI	CAATTG	1 cut(s)	330
MvnI	CGCG	2 cut(s)	86, 574
MwoI	GCNNNNNNNGC	7 cut(s)	21, 30, 36, 45, 234, 517, 566
NaeI	GCCGGC	2 cut(s)	37, 226
NarI	GGCGCC	1 cut(s)	222
NciI	CCSGG	2 cut(s)	185, 508
NdeI	CATATG	1 cut(s)	525
NdeII	GATC	3 cut(s)	61, 73, 103
NgoMIV	GCCGGC	2 cut(s)	35, 224
NlaIII	CATG	3 cut(s)	446, 477, 740
NlaIV	GGNNCC	2 cut(s)	52, 223
NmuCI	GTSAC	2 cut(s)	190, 635
NspI	RCATGY	1 cut(s)	446
PaqCI	CACCTGC	1 cut(s)	35
PauI	GCGCGC	1 cut(s)	84
PcsI	WCGNNNNNNNCGW	1 cut(s)	601
PdiI	GCCGGC	2 cut(s)	37, 226
PfeI	GAWTC	1 cut(s)	167
PkrI	GCNGC	5 cut(s)	32, 50, 239, 522, 559
PleI	GAGTC	1 cut(s)	261
PluTI	GGCGCC	1 cut(s)	225
PpsI	GAGTC	1 cut(s)	261
PspN4I	GGNNCC	2 cut(s)	52, 223
PspPI	GGNCC	1 cut(s)	488
PsuI	RGATCY	1 cut(s)	73
PteI	GCGCGC	1 cut(s)	84
RseI	CAYNNNNRTG	1 cut(s)	548
SaqAI	TTAA	3 cut(s)	204, 585, 771
SatI	GCNGC	5 cut(s)	31, 49, 238, 521, 558
Sau3AI	GATC	3 cut(s)	61, 73, 103
Sau96I	GGNCC	1 cut(s)	488
SchI	GAGTC	1 cut(s)	261
ScrFI	CCNGG	2 cut(s)	185, 508
SfoI	GGCGCC	1 cut(s)	223
SgrAI	CRCCGGYG	1 cut(s)	35
SinI	GGWCC	1 cut(s)	488
SmiMI	CAYNNNNRTG	1 cut(s)	548
SmlI	CTYRAG	1 cut(s)	355
SmoI	CTYRAG	1 cut(s)	355
Sse9I	AATT	6 cut(s)	330, 669, 719, 756, 793, 829
SsiI	CCGC	2 cut(s)	48, 237
SspDI	GGCGCC	1 cut(s)	221
SspMI	CTAG	3 cut(s)	260, 264, 841
StyD4I	CCNGG	2 cut(s)	183, 506
TaaI	ACNGT	6 cut(s)	59, 340, 437, 492, 597, 635
TaiI	ACGT	2 cut(s)	21, 150
TaqI	TCGA	1 cut(s)	161
TasI	AATT	6 cut(s)	330, 669, 719, 756, 793, 829
TauI	GCSGC	2 cut(s)	51, 240
TfiI	GAWTC	1 cut(s)	167
Tru1I	TTAA	3 cut(s)	204, 585, 771
Tru9I	TTAA	3 cut(s)	204, 585, 771
TscAI	CASTG	1 cut(s)	408
TseFI	GTSAC	2 cut(s)	190, 635
TseI	GCWGC	3 cut(s)	30, 520, 557
Tsp45I	GTSAC	2 cut(s)	190, 635
TspDTI	ATGAA	1 cut(s)	339
TspGWI	ACGGA	1 cut(s)	102
TspRI	CASTG	1 cut(s)	408
VpaK11BI	GGWCC	1 cut(s)	488
XagI	CCTNNNNNAGG	1 cut(s)	295
XapI	RAATTY	2 cut(s)	669, 719
XceI	RCATGY	1 cut(s)	446
XmiI	GTMKAC	2 cut(s)	540, 613
XspI	CTAG	3 cut(s)	260, 264, 841
ZraI	GACGTC	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.