Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001014

Physical Location & Seq

Genomic Coordinates Reverse (-)

27877239 .. 27878209

Gene Structure 971 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG154900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGTCGCCGGGGTGCGACGTCTGCACCTGCTGCGCCTGCCAGAATGGCGGCTCCAACGGTGATCACGCCGAAGATCTGGTGTGCGCGAATTACAGGAAATCAGATCCCTCTCCGTCGTCGTTTTGCTATTTCTCTTCGCTCAAATACGTTCCTGTGCCGTCGAGCGATTCCGAGAAGCTACGGCGGGTCGTGACTGCTTCGATTAAGGGTTTCACCATCGGCGCCGGCCTCAAAGGTGGCCTCGCCGTCTTCTCCATCCTAGCTAGACTCAGAAAGAGAAATCTCTTAGCCTCTCTCAGAAATGTTCATATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TMEM135_C_rich

Protein Analysis

104

Amino Acids

11.09

Weight (kDa)

9.12

Isoelectric Point (pI)

67.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34630 AT1G34630 AT1G34630 AT1G34630 AT1G34630
fragaria_vesca	FvH4_5g37331 FvH4_5g37331
malus_domestica	MD08G1182800.v1.1
prunus_persica	Prupe.1G517000_v2.0.a1 Prupe.1G517000_v2.0.a1
pyrus_communis	pycom08g15660
rosa_chinensis	RchiOBHm_Chr3g0470741 RchiOBHm_Chr4g0408951 RchiOBHm_Chr7g0238981
rosa_laevigata	RLG00000000793 RLG00000007867 RLG00000014356 RLG00000015234 RLG00000016579 RLG00000020758
rosa_multiflora	Rmu_co8298683.1_g000001 Rmu_sc0002152.1_g000014 Rmu_sc0004132.1_g000004 Rmu_sc0004879.1_g000005 Rmu_sc0005866.1_g000014 Rmu_sc0010178.1_g000001 Rmu_sc0029797.1_g000001 Rmu_sc0032697.1_g000001 Rmu_sc0034117.1_g000001 Rmu_ssc0000233.1_g000066
rosa_roxburghii	Rroxscaffold_3G00221410 Rroxscaffold_3G00221420
rosa_rugosa	Rorug03G0157600 Rorug05G0148200 Rorug05G0232900 Rorug05G0238700 Rorug07G0324200.1
rosa_samantha	Rh1BG208000 Rh1DG234700 Rh2AG003700 Rh2AG216800 Rh2DG222500 Rh3AG161900 Rh3AG329400 Rh3BG186700 Rh3CG176900 Rh3DG308000 Rh4AG125400 Rh4AG152700 Rh4BG154900 Rh4CG133600 Rh4DG112900 Rh5AG299600 Rh7AG465300 Rh7AG479200 Rh7BG451800 Rh7CG251000 Rh7CG496300 Rh7DG343400 Rh7DG463900
rosa_wichuraiana	Rw7G040000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	35
AatII	GACGTC	1 cut(s)	21
Acc36I	ACCTGC	1 cut(s)	35
AccB1I	GGYRCC	1 cut(s)	221
AccII	CGCG	1 cut(s)	86
AciI	CCGC	2 cut(s)	48, 184
AclWI	GGATC	1 cut(s)	98
AcyI	GRCGYC	2 cut(s)	18, 222
AluBI	AGCT	2 cut(s)	178, 263
AluI	AGCT	2 cut(s)	178, 263
AlwI	GGATC	1 cut(s)	98
AoxI	GGCC	2 cut(s)	226, 238
ApeKI	GCWGC	1 cut(s)	30
AspLEI	GCGC	3 cut(s)	35, 86, 224
AsuC2I	CCSGG	1 cut(s)	9
AsuHPI	GGTGA	2 cut(s)	71, 205
BanI	GGYRCC	1 cut(s)	221
BbsI	GAAGAC	1 cut(s)	241
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	2 cut(s)	224, 263
BceAI	ACGGC	3 cut(s)	142, 197, 230
BclI	TGATCA	1 cut(s)	61
BcnI	CCSGG	1 cut(s)	9
BfaI	CTAG	2 cut(s)	260, 264
BfoI	RGCGCY	1 cut(s)	225
BfuAI	ACCTGC	1 cut(s)	35
BglI	GCCNNNNNGGC	1 cut(s)	45
BglII	AGATCT	1 cut(s)	73
BisI	GCNGC	2 cut(s)	31, 49
BlsI	GCNGC	2 cut(s)	32, 50
Bme1390I	CCNGG	1 cut(s)	9
BmiI	GGNNCC	2 cut(s)	52, 223
BmrFI	CCNGG	1 cut(s)	9
BpiI	GAAGAC	1 cut(s)	241
BpuMI	CCSGG	1 cut(s)	9
BsaHI	GRCGYC	2 cut(s)	18, 222
BsaJI	CCNNGG	1 cut(s)	8
Bse118I	RCCGGY	1 cut(s)	224
BseDI	CCNNGG	1 cut(s)	8
BseGI	GGATG	1 cut(s)	255
BseMII	CTCAG	2 cut(s)	283, 310
BseXI	GCAGC	1 cut(s)	17
BsgI	GTGCAG	1 cut(s)	7
Bsh1236I	CGCG	1 cut(s)	86
BshFI	GGCC	2 cut(s)	228, 240
BshNI	GGYRCC	1 cut(s)	221
BsiSI	CCGG	2 cut(s)	8, 225
BsnI	GGCC	2 cut(s)	228, 240
Bsp143I	GATC	3 cut(s)	61, 73, 103
BspACI	CCGC	2 cut(s)	48, 184
BspANI	GGCC	2 cut(s)	228, 240
BspCNI	CTCAG	2 cut(s)	282, 309
BspFNI	CGCG	1 cut(s)	86
BspLI	GGNNCC	2 cut(s)	52, 223
BspMI	ACCTGC	1 cut(s)	35
BspPI	GGATC	1 cut(s)	98
BspT107I	GGYRCC	1 cut(s)	221
BsrFI	RCCGGY	1 cut(s)	224
BssAI	RCCGGY	1 cut(s)	224
BssECI	CCNNGG	1 cut(s)	8
BssMI	GATC	3 cut(s)	61, 73, 103
BssNI	GRCGYC	2 cut(s)	18, 222
Bst4CI	ACNGT	1 cut(s)	59
Bst6I	CTCTTC	1 cut(s)	139
BstACI	GRCGYC	2 cut(s)	18, 222
BstAPI	GCANNNNNTGC	1 cut(s)	30
BstC8I	GCNNGC	2 cut(s)	37, 226
BstDEI	CTNAG	3 cut(s)	269, 286, 296
BstF5I	GGATG	1 cut(s)	255
BstFNI	CGCG	1 cut(s)	86
BstH2I	RGCGCY	1 cut(s)	225
BstHHI	GCGC	3 cut(s)	35, 86, 224
BstKTI	GATC	3 cut(s)	64, 76, 106
BstMBI	GATC	3 cut(s)	61, 73, 103
BstMWI	GCNNNNNNNGC	4 cut(s)	21, 30, 36, 45
BstSCI	CCNGG	1 cut(s)	7
BstUI	CGCG	1 cut(s)	86
BstV1I	GCAGC	1 cut(s)	17
BstV2I	GAAGAC	1 cut(s)	241
BstX2I	RGATCY	2 cut(s)	73, 103
BstYI	RGATCY	2 cut(s)	73, 103
BsuRI	GGCC	2 cut(s)	228, 240
BtsCI	GGATG	1 cut(s)	255
BveI	ACCTGC	1 cut(s)	35
Cac8I	GCNNGC	2 cut(s)	37, 226
CfoI	GCGC	3 cut(s)	35, 86, 224
Cfr10I	RCCGGY	1 cut(s)	224
CviJI	RGCY	6 cut(s)	51, 178, 228, 240, 263, 290
CviKI_1	RGCY	6 cut(s)	51, 178, 228, 240, 263, 290
DdeI	CTNAG	3 cut(s)	269, 286, 296
DinI	GGCGCC	1 cut(s)	223
DpnI	GATC	3 cut(s)	63, 75, 105
DpnII	GATC	3 cut(s)	61, 73, 103
Eam1104I	CTCTTC	1 cut(s)	139
EarI	CTCTTC	1 cut(s)	139
EgeI	GGCGCC	1 cut(s)	223
EheI	GGCGCC	1 cut(s)	223
FaiI	YATR	1 cut(s)	309
FauI	CCCGC	1 cut(s)	177
FbaI	TGATCA	1 cut(s)	61
Fnu4HI	GCNGC	2 cut(s)	31, 49
FokI	GGATG	1 cut(s)	242
Fsp4HI	GCNGC	2 cut(s)	31, 49
FspBI	CTAG	2 cut(s)	260, 264
GlaI	GCGC	3 cut(s)	34, 85, 223
GluI	GCNGC	2 cut(s)	31, 49
HaeII	RGCGCY	1 cut(s)	225
HaeIII	GGCC	2 cut(s)	228, 240
HapII	CCGG	2 cut(s)	8, 225
HhaI	GCGC	3 cut(s)	35, 86, 224
Hin1I	GRCGYC	2 cut(s)	18, 222
Hin6I	GCGC	3 cut(s)	33, 84, 222
HinP1I	GCGC	3 cut(s)	33, 84, 222
HinfI	GANTC	2 cut(s)	167, 267
HpaII	CCGG	2 cut(s)	8, 225
HphI	GGTGA	2 cut(s)	71, 205
Hpy188I	TCNGA	4 cut(s)	103, 172, 272, 299
Hpy188III	TCNNGA	1 cut(s)	190
Hpy99I	CGWCG	4 cut(s)	20, 118, 121, 163
HpyCH4III	ACNGT	1 cut(s)	59
HpyCH4IV	ACGT	2 cut(s)	18, 147
HpyCH4V	TGCA	1 cut(s)	24
HpyF10VI	GCNNNNNNNGC	4 cut(s)	21, 30, 36, 45
HpyF3I	CTNAG	3 cut(s)	269, 286, 296
HpySE526I	ACGT	2 cut(s)	18, 147
Hsp92I	GRCGYC	2 cut(s)	18, 222
HspAI	GCGC	3 cut(s)	33, 84, 222
KasI	GGCGCC	1 cut(s)	221
KroI	GCCGGC	1 cut(s)	224
KroNI	GCCGGC	1 cut(s)	226
Ksp22I	TGATCA	1 cut(s)	61
Kzo9I	GATC	3 cut(s)	61, 73, 103
LmnI	GCTCC	1 cut(s)	56
LpnPI	CCDG	8 cut(s)	21, 40, 49, 53, 62, 79, 165, 238
Lsp1109I	GCAGC	1 cut(s)	17
MaeI	CTAG	2 cut(s)	260, 264
MaeII	ACGT	2 cut(s)	18, 147
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	3 cut(s)	63, 75, 105
MboI	GATC	3 cut(s)	61, 73, 103
MboII	GAAGA	3 cut(s)	83, 126, 241
MflI	RGATCY	2 cut(s)	73, 103
MluCI	AATT	1 cut(s)	88
Mly113I	GGCGCC	1 cut(s)	222
MlyI	GAGTC	1 cut(s)	261
MmeI	TCCRAC	1 cut(s)	78
MnlI	CCTC	4 cut(s)	118, 239, 251, 301
MroNI	GCCGGC	1 cut(s)	224
MseI	TTAA	1 cut(s)	204
MspI	CCGG	2 cut(s)	8, 225
MspR9I	CCNGG	1 cut(s)	9
MvnI	CGCG	1 cut(s)	86
MwoI	GCNNNNNNNGC	4 cut(s)	21, 30, 36, 45
NaeI	GCCGGC	1 cut(s)	226
NarI	GGCGCC	1 cut(s)	222
NciI	CCSGG	1 cut(s)	9
NdeII	GATC	3 cut(s)	61, 73, 103
NgoMIV	GCCGGC	1 cut(s)	224
NlaIV	GGNNCC	2 cut(s)	52, 223
NmuCI	GTSAC	1 cut(s)	190
PaqCI	CACCTGC	1 cut(s)	35
PdiI	GCCGGC	1 cut(s)	226
PfeI	GAWTC	1 cut(s)	167
PkrI	GCNGC	2 cut(s)	32, 50
PleI	GAGTC	1 cut(s)	261
PluTI	GGCGCC	1 cut(s)	225
PpsI	GAGTC	1 cut(s)	261
PspN4I	GGNNCC	2 cut(s)	52, 223
PsuI	RGATCY	2 cut(s)	73, 103
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	2 cut(s)	31, 49
Sau3AI	GATC	3 cut(s)	61, 73, 103
SchI	GAGTC	1 cut(s)	261
ScrFI	CCNGG	1 cut(s)	9
SetI	ASST	6 cut(s)	21, 29, 150, 180, 238, 265
SfoI	GGCGCC	1 cut(s)	223
Sse9I	AATT	1 cut(s)	88
SsiI	CCGC	2 cut(s)	48, 184
SspDI	GGCGCC	1 cut(s)	221
SspMI	CTAG	2 cut(s)	260, 264
StyD4I	CCNGG	1 cut(s)	7
TaaI	ACNGT	1 cut(s)	59
TaiI	ACGT	2 cut(s)	21, 150
TaqI	TCGA	2 cut(s)	161, 200
TasI	AATT	1 cut(s)	88
TauI	GCSGC	1 cut(s)	51
TfiI	GAWTC	1 cut(s)	167
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	1 cut(s)	30
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	1 cut(s)	296
TspGWI	ACGGA	1 cut(s)	102
XspI	CTAG	2 cut(s)	260, 264
ZraI	GACGTC	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.