Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001014

Physical Location & Seq

Genomic Coordinates Forward (+)

41910300 .. 41912023

Gene Structure 1724 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG299600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGTCGCCGGACGGCGACGTCTGCACCTGCTGCGCCAGCGAGAATGGCGGCTCCAACGGTGATCATGCCGAAGATCTGGTGTGCGCGCATTGCAGGACATCTGATCCCTCTCCGTCGTCGTTTTGCTATTCCTCTTCACTCAAATACGTTCCTGTGCCGTTGAGCGATTCCGAGAAGCTACGGCGGGTCGTGACTGCTTCAATTAAGGGTTTCACCATCGACGCTGGCCTCAAAGGTGGCCTCGCCGTCTTCTCTATCCTAGCTAGACTCAGAAAGAGAAAGCTCTTAGCCTCTCTCAGGACTGAGGGTGCGATTATGAATAATGAAGCAATTGTTACTACTTTGAAGGAGACCTTGAGATATGGTCTGTTTCTTAGGACTTTTATAGGCACATTTGTTTCAGTGGATGAGATTATTGCTTCTTTGGGAGGCCACCGTAGGCATGTTCCTTGTTCTTTTATATTCAGCTTCGCATGGACAGCTAAGTGGAGGGCTTTGTTAGCAGGGCTTATAGCAGGACCGTCTATGCTTCTTACTAGGCATAACACGCAGCATATGAGCTTGGCCGTATACATACTTGTGCGTGCTGCCGTGTTGGCCACACGTTGTGGGATTAAAAGCAAATGGTTTGGTCGTGTTTGTAGACCTCTCACTTGGAAGCGCGGTGACATTTTCCTTATGTGTCTCTCCTCTTCACAAATTCTGTCTGCTTACATATTGAAGCAGGAGAGTTTGCCTCCATCATATAAATCCTTTCTCAACAAACATGGGGGAAAGGATATCACAATTTTGCAAGGTGATTCTAGCTATTATTTCTCCAGGAGCAAAGCAAGGTTTAATCCCCCTTGCTGTACCACTTTCAAGAAATATCTCAGGTGCTGTAACTGCATTGCTCCGGTGGCCTATAGCTCTGCAAGGGTGAGTATCAGAAAATTGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TMEM135_C_rich

Protein Analysis

313

Amino Acids

34.51

Weight (kDa)

9.63

Isoelectric Point (pI)

48.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34630 AT1G34630 AT1G34630 AT1G34630 AT1G34630
fragaria_vesca	FvH4_5g37331 FvH4_5g37331
malus_domestica	MD08G1182800.v1.1
prunus_persica	Prupe.1G517000_v2.0.a1 Prupe.1G517000_v2.0.a1
pyrus_communis	pycom08g15660
rosa_chinensis	RchiOBHm_Chr3g0470741 RchiOBHm_Chr4g0408951 RchiOBHm_Chr7g0238981
rosa_laevigata	RLG00000000793 RLG00000007867 RLG00000014356 RLG00000015234 RLG00000016579 RLG00000020758
rosa_multiflora	Rmu_co8298683.1_g000001 Rmu_sc0002152.1_g000014 Rmu_sc0004132.1_g000004 Rmu_sc0004879.1_g000005 Rmu_sc0005866.1_g000014 Rmu_sc0010178.1_g000001 Rmu_sc0029797.1_g000001 Rmu_sc0032697.1_g000001 Rmu_sc0034117.1_g000001 Rmu_ssc0000233.1_g000066
rosa_roxburghii	Rroxscaffold_3G00221410 Rroxscaffold_3G00221420
rosa_rugosa	Rorug03G0157600 Rorug05G0148200 Rorug05G0232900 Rorug05G0238700 Rorug07G0324200.1
rosa_samantha	Rh1BG208000 Rh1DG234700 Rh2AG003700 Rh2AG216800 Rh2DG222500 Rh3AG161900 Rh3AG329400 Rh3BG186700 Rh3CG176900 Rh3DG308000 Rh4AG125400 Rh4AG152700 Rh4BG154900 Rh4CG133600 Rh4DG112900 Rh5AG299600 Rh7AG465300 Rh7AG479200 Rh7BG451800 Rh7CG251000 Rh7CG496300 Rh7DG343400 Rh7DG463900
rosa_wichuraiana	Rw7G040000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	35
AasI	GACNNNNNNGTC	1 cut(s)	17
AatII	GACGTC	1 cut(s)	21
Acc36I	ACCTGC	1 cut(s)	35
AccI	GTMKAC	2 cut(s)	570, 643
AccII	CGCG	2 cut(s)	86, 663
AciI	CCGC	3 cut(s)	48, 184, 663
AclWI	GGATC	1 cut(s)	98
AcoI	YGGCCR	2 cut(s)	564, 597
AcsI	RAATTY	1 cut(s)	699
AcyI	GRCGYC	1 cut(s)	18
AdeI	CACNNNGTG	1 cut(s)	608
AfaI	GTAC	1 cut(s)	853
AfiI	CCNNNNNNNGG	1 cut(s)	297
AflIII	ACRYGT	1 cut(s)	602
AgsI	TTSAA	4 cut(s)	201, 346, 721, 862
AjnI	CCWGG	1 cut(s)	818
AluBI	AGCT	8 cut(s)	178, 263, 283, 468, 482, 561, 807, 909
AluI	AGCT	8 cut(s)	178, 263, 283, 468, 482, 561, 807, 909
Alw26I	GTCTC	2 cut(s)	344, 689
AlwI	GGATC	1 cut(s)	98
AlwNI	CAGNNNCTG	1 cut(s)	879
AoxI	GGCC	6 cut(s)	226, 238, 430, 564, 597, 900
ApeKI	GCWGC	3 cut(s)	30, 550, 587
ApoI	RAATTY	1 cut(s)	699
AspLEI	GCGC	4 cut(s)	35, 86, 88, 663
AspS9I	GGNCC	1 cut(s)	518
AsuHPI	GGTGA	5 cut(s)	71, 205, 677, 809, 931
AvaII	GGWCC	1 cut(s)	518
BalI	TGGCCA	1 cut(s)	599
BbsI	GAAGAC	1 cut(s)	241
BbvI	GCAGC	3 cut(s)	17, 562, 574
BccI	CCATC	2 cut(s)	224, 748
BceAI	ACGGC	6 cut(s)	28, 142, 197, 230, 551, 575
BciT130I	CCWGG	1 cut(s)	820
BclI	TGATCA	1 cut(s)	61
BcoDI	GTCTC	2 cut(s)	344, 689
BfaI	CTAG	5 cut(s)	260, 264, 537, 804, 940
BfmI	CTRYAG	1 cut(s)	904
BfuAI	ACCTGC	1 cut(s)	35
BglI	GCCNNNNNGGC	1 cut(s)	596
BglII	AGATCT	1 cut(s)	73
BisI	GCNGC	4 cut(s)	31, 49, 551, 588
BlsI	GCNGC	4 cut(s)	32, 50, 552, 589
Bme1390I	CCNGG	1 cut(s)	820
Bme18I	GGWCC	1 cut(s)	518
BmgT120I	GGNCC	1 cut(s)	518
BmiI	GGNNCC	1 cut(s)	52
BmrFI	CCNGG	1 cut(s)	820
BpiI	GAAGAC	1 cut(s)	241
BplI	GAGNNNNNCTC	2 cut(s)	721, 753
BpmI	CTGGAG	1 cut(s)	802
BpuEI	CTTGAG	1 cut(s)	376
BsaHI	GRCGYC	1 cut(s)	18
BsaI	GGTCTC	1 cut(s)	344
BsaWI	WCCGGW	1 cut(s)	895
Bsc4I	CCNNNNNNNGG	1 cut(s)	297
Bse3DI	GCAATG	2 cut(s)	88, 888
BseBI	CCWGG	1 cut(s)	820
BseGI	GGATG	1 cut(s)	412
BseLI	CCNNNNNNNGG	1 cut(s)	297
BseMI	GCAATG	2 cut(s)	88, 888
BseMII	CTCAG	4 cut(s)	283, 294, 310, 886
BsePI	GCGCGC	1 cut(s)	84
BseRI	GAGGAG	1 cut(s)	679
BseXI	GCAGC	3 cut(s)	17, 562, 574
BsgI	GTGCAG	1 cut(s)	7
Bsh1236I	CGCG	2 cut(s)	86, 663
BshFI	GGCC	6 cut(s)	228, 240, 432, 566, 599, 902
BsiSI	CCGG	2 cut(s)	8, 896
BslI	CCNNNNNNNGG	1 cut(s)	297
BsmAI	GTCTC	2 cut(s)	344, 689
BsnI	GGCC	6 cut(s)	228, 240, 432, 566, 599, 902
Bso31I	GGTCTC	1 cut(s)	344
Bsp143I	GATC	3 cut(s)	61, 73, 103
BspACI	CCGC	3 cut(s)	48, 184, 663
BspANI	GGCC	6 cut(s)	228, 240, 432, 566, 599, 902
BspCNI	CTCAG	4 cut(s)	282, 295, 309, 885
BspFNI	CGCG	2 cut(s)	86, 663
BspLI	GGNNCC	1 cut(s)	52
BspMI	ACCTGC	1 cut(s)	35
BspPI	GGATC	1 cut(s)	98
BspTNI	GGTCTC	1 cut(s)	344
BsrDI	GCAATG	2 cut(s)	88, 888
BssHII	GCGCGC	1 cut(s)	84
BssMI	GATC	3 cut(s)	61, 73, 103
BssNAI	GTATAC	1 cut(s)	571
BssNI	GRCGYC	1 cut(s)	18
Bst1107I	GTATAC	1 cut(s)	571
Bst2UI	CCWGG	1 cut(s)	820
Bst4CI	ACNGT	3 cut(s)	59, 437, 522
Bst6I	CTCTTC	2 cut(s)	139, 697
BstACI	GRCGYC	1 cut(s)	18
BstAPI	GCANNNNNTGC	1 cut(s)	30
BstC8I	GCNNGC	4 cut(s)	37, 86, 226, 585
BstDEI	CTNAG	7 cut(s)	269, 286, 296, 303, 374, 483, 872
BstENI	CCTNNNNNAGG	1 cut(s)	295
BstF5I	GGATG	1 cut(s)	412
BstFNI	CGCG	2 cut(s)	86, 663
BstHHI	GCGC	4 cut(s)	35, 86, 88, 663
BstKTI	GATC	3 cut(s)	64, 76, 106
BstMAI	GTCTC	2 cut(s)	344, 689
BstMBI	GATC	3 cut(s)	61, 73, 103
BstNI	CCWGG	1 cut(s)	820
BstNSI	RCATGY	1 cut(s)	446
BstSCI	CCNGG	1 cut(s)	818
BstSFI	CTRYAG	1 cut(s)	904
BstUI	CGCG	2 cut(s)	86, 663
BstV1I	GCAGC	3 cut(s)	17, 562, 574
BstV2I	GAAGAC	1 cut(s)	241
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
BstZ17I	GTATAC	1 cut(s)	571
BsuRI	GGCC	6 cut(s)	228, 240, 432, 566, 599, 902
BtsCI	GGATG	1 cut(s)	412
BtsIMutI	CAGTG	1 cut(s)	408
BveI	ACCTGC	1 cut(s)	35
Cac8I	GCNNGC	4 cut(s)	37, 86, 226, 585
CaiI	CAGNNNCTG	1 cut(s)	879
CfoI	GCGC	4 cut(s)	35, 86, 88, 663
Cfr13I	GGNCC	1 cut(s)	518
CseI	GACGC	1 cut(s)	230
Csp6I	GTAC	1 cut(s)	852
CviAII	CATG	4 cut(s)	65, 443, 474, 767
CviQI	GTAC	1 cut(s)	852
DdeI	CTNAG	7 cut(s)	269, 286, 296, 303, 374, 483, 872
DpnI	GATC	3 cut(s)	63, 75, 105
DpnII	GATC	3 cut(s)	61, 73, 103
DraIII	CACNNNGTG	1 cut(s)	608
DrdI	GACNNNNNNGTC	1 cut(s)	17
DseDI	GACNNNNNNGTC	1 cut(s)	17
EaeI	YGGCCR	2 cut(s)	564, 597
Eam1104I	CTCTTC	2 cut(s)	139, 697
EarI	CTCTTC	2 cut(s)	139, 697
Eco31I	GGTCTC	1 cut(s)	344
Eco32I	GATATC	1 cut(s)	781
Eco47I	GGWCC	1 cut(s)	518
EcoNI	CCTNNNNNAGG	1 cut(s)	295
EcoRII	CCWGG	1 cut(s)	818
EcoRV	GATATC	1 cut(s)	781
FaeI	CATG	4 cut(s)	68, 446, 477, 770
FalI	AAGNNNNNCTT	2 cut(s)	338, 370
FatI	CATG	4 cut(s)	64, 442, 473, 766
FauI	CCCGC	1 cut(s)	177
FauNDI	CATATG	1 cut(s)	555
FbaI	TGATCA	1 cut(s)	61
FblI	GTMKAC	2 cut(s)	570, 643
Fnu4HI	GCNGC	4 cut(s)	31, 49, 551, 588
FokI	GGATG	1 cut(s)	419
Fsp4HI	GCNGC	4 cut(s)	31, 49, 551, 588
FspBI	CTAG	5 cut(s)	260, 264, 537, 804, 940
GlaI	GCGC	4 cut(s)	34, 85, 87, 662
GluI	GCNGC	4 cut(s)	31, 49, 551, 588
GsuI	CTGGAG	1 cut(s)	802
HaeIII	GGCC	6 cut(s)	228, 240, 432, 566, 599, 902
HapII	CCGG	2 cut(s)	8, 896
HgaI	GACGC	1 cut(s)	230
HhaI	GCGC	4 cut(s)	35, 86, 88, 663
Hin1I	GRCGYC	1 cut(s)	18
Hin1II	CATG	4 cut(s)	68, 446, 477, 770
Hin6I	GCGC	4 cut(s)	33, 84, 86, 661
HinP1I	GCGC	4 cut(s)	33, 84, 86, 661
HinfI	GANTC	3 cut(s)	167, 267, 800
HpaII	CCGG	2 cut(s)	8, 896
HphI	GGTGA	5 cut(s)	71, 205, 677, 809, 931
Hpy166II	GTNNAC	2 cut(s)	571, 644
Hpy188I	TCNGA	4 cut(s)	103, 172, 272, 929
Hpy188III	TCNNGA	3 cut(s)	190, 298, 862
Hpy8I	GTNNAC	2 cut(s)	571, 644
Hpy99I	CGWCG	4 cut(s)	20, 118, 121, 224
HpyAV	CCTTC	1 cut(s)	340
HpyCH4III	ACNGT	3 cut(s)	59, 437, 522
HpyCH4IV	ACGT	3 cut(s)	18, 147, 604
HpyCH4V	TGCA	5 cut(s)	24, 93, 793, 888, 914
HpyF3I	CTNAG	7 cut(s)	269, 286, 296, 303, 374, 483, 872
HpySE526I	ACGT	3 cut(s)	18, 147, 604
Hsp92I	GRCGYC	1 cut(s)	18
Hsp92II	CATG	4 cut(s)	68, 446, 477, 770
HspAI	GCGC	4 cut(s)	33, 84, 86, 661
Ksp22I	TGATCA	1 cut(s)	61
Kzo9I	GATC	3 cut(s)	61, 73, 103
LmnI	GCTCC	3 cut(s)	56, 822, 898
Lsp1109I	GCAGC	3 cut(s)	17, 562, 574
MaeI	CTAG	5 cut(s)	260, 264, 537, 804, 940
MaeII	ACGT	3 cut(s)	18, 147, 604
MaeIII	GTNAC	4 cut(s)	190, 334, 665, 881
MalI	GATC	3 cut(s)	63, 75, 105
MboI	GATC	3 cut(s)	61, 73, 103
MboII	GAAGA	4 cut(s)	83, 126, 241, 684
MfeI	CAATTG	1 cut(s)	330
MflI	RGATCY	1 cut(s)	73
MlsI	TGGCCA	1 cut(s)	599
MluCI	AATT	5 cut(s)	201, 330, 699, 786, 932
MluNI	TGGCCA	1 cut(s)	599
MlyI	GAGTC	1 cut(s)	261
MmeI	TCCRAC	1 cut(s)	78
Mox20I	TGGCCA	1 cut(s)	599
MscI	TGGCCA	1 cut(s)	599
MseI	TTAA	3 cut(s)	204, 615, 837
MslI	CAYNNNNRTG	1 cut(s)	578
Msp20I	TGGCCA	1 cut(s)	599
MspI	CCGG	2 cut(s)	8, 896
MspR9I	CCNGG	1 cut(s)	820
MunI	CAATTG	1 cut(s)	330
MvaI	CCWGG	1 cut(s)	820
MvnI	CGCG	2 cut(s)	86, 663
NdeI	CATATG	1 cut(s)	555
NdeII	GATC	3 cut(s)	61, 73, 103
NlaIII	CATG	4 cut(s)	68, 446, 477, 770
NlaIV	GGNNCC	1 cut(s)	52
NmuCI	GTSAC	2 cut(s)	190, 665
NspI	RCATGY	1 cut(s)	446
PaqCI	CACCTGC	1 cut(s)	35
PauI	GCGCGC	1 cut(s)	84
PfeI	GAWTC	2 cut(s)	167, 800
PfoI	TCCNGGA	1 cut(s)	818
PkrI	GCNGC	4 cut(s)	32, 50, 552, 589
PleI	GAGTC	1 cut(s)	261
PpsI	GAGTC	1 cut(s)	261
Psp6I	CCWGG	1 cut(s)	818
PspGI	CCWGG	1 cut(s)	818
PspN4I	GGNNCC	1 cut(s)	52
PspPI	GGNCC	1 cut(s)	518
PstNI	CAGNNNCTG	1 cut(s)	879
PsuI	RGATCY	1 cut(s)	73
PteI	GCGCGC	1 cut(s)	84
RsaI	GTAC	1 cut(s)	853
RsaNI	GTAC	1 cut(s)	852
RseI	CAYNNNNRTG	1 cut(s)	578
SaqAI	TTAA	3 cut(s)	204, 615, 837
SatI	GCNGC	4 cut(s)	31, 49, 551, 588
Sau3AI	GATC	3 cut(s)	61, 73, 103
Sau96I	GGNCC	1 cut(s)	518
SchI	GAGTC	1 cut(s)	261
ScrFI	CCNGG	1 cut(s)	820
SfcI	CTRYAG	1 cut(s)	904
SinI	GGWCC	1 cut(s)	518
SmiMI	CAYNNNNRTG	1 cut(s)	578
SmlI	CTYRAG	1 cut(s)	355
SmoI	CTYRAG	1 cut(s)	355
Sse9I	AATT	5 cut(s)	201, 330, 699, 786, 932
SsiI	CCGC	3 cut(s)	48, 184, 663
SspMI	CTAG	5 cut(s)	260, 264, 537, 804, 940
StyD4I	CCNGG	1 cut(s)	818
TaaI	ACNGT	3 cut(s)	59, 437, 522
TaiI	ACGT	3 cut(s)	21, 150, 607
TaqI	TCGA	1 cut(s)	219
TasI	AATT	5 cut(s)	201, 330, 699, 786, 932
TauI	GCSGC	1 cut(s)	51
TfiI	GAWTC	2 cut(s)	167, 800
Tru1I	TTAA	3 cut(s)	204, 615, 837
Tru9I	TTAA	3 cut(s)	204, 615, 837
TscAI	CASTG	1 cut(s)	408
TseFI	GTSAC	2 cut(s)	190, 665
TseI	GCWGC	3 cut(s)	30, 550, 587
Tsp45I	GTSAC	2 cut(s)	190, 665
TspDTI	ATGAA	2 cut(s)	332, 339
TspGWI	ACGGA	1 cut(s)	102
TspRI	CASTG	1 cut(s)	408
VpaK11BI	GGWCC	1 cut(s)	518
XagI	CCTNNNNNAGG	1 cut(s)	295
XapI	RAATTY	1 cut(s)	699
XceI	RCATGY	1 cut(s)	446
XmiI	GTMKAC	2 cut(s)	570, 643
XspI	CTAG	5 cut(s)	260, 264, 537, 804, 940
ZraI	GACGTC	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.