Rorug05G0148200

peroxisome organization

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0001014
Physical Location & Seq
Forward (+)
13784428 .. 13784888
461 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0148200.1

Sequence Viewer

Length: 312 bp
ATGGCTGCCCTCAAGAACTACGACGGCAAGTACTGGCGCGACCTCTTCGACTCCCGCGTCGGCAAAACCACCTGGCCCTACGGCTCCAGCGTCTGGTCAAAAAAGGAATGGGTCCTCCCTAAGATCGACAGCGACGACATCATCTCCGCCTTCGAAGGCAACTCCAACCTCTTCTGGGTCGAGCGCTACGGCAAAAAAGTCCTCGGCATGAACGAGCTCTGGGTCAAGCACTGCGGCATCAGCCACACCGGCTCCTTCAAGGACCTAGGCATGACCGTCCTCGTCAGCCAGGTCAATCACCTCGCAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TMEM135_C_rich

Protein Analysis

103

Amino Acids

11.81

Weight (kDa)

9.04

Isoelectric Point (pI)

7.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 56
AccB7I CCANNNNNTGG 1 cut(s) 93
AccII CGCG 2 cut(s) 39, 57
AciI CCGC 3 cut(s) 55, 147, 234
AfaI GTAC 1 cut(s) 32
AfeI AGCGCT 1 cut(s) 185
AfiI CCNNNNNNNGG 2 cut(s) 93, 175
AgsI TTSAA 1 cut(s) 259
AjnI CCWGG 2 cut(s) 71, 288
AluBI AGCT 1 cut(s) 217
AluI AGCT 1 cut(s) 217
Alw21I GWGCWC 1 cut(s) 219
AlwNI CAGNNNCTG 1 cut(s) 93
Aor51HI AGCGCT 1 cut(s) 185
AoxI GGCC 1 cut(s) 74
ApeKI GCWGC 1 cut(s) 5
AspA2I CCTAGG 1 cut(s) 265
AspLEI GCGC 2 cut(s) 39, 186
AspS9I GGNCC 3 cut(s) 75, 112, 262
AsuHPI GGTGA 1 cut(s) 290
AsuII TTCGAA 1 cut(s) 153
AvaII GGWCC 2 cut(s) 112, 262
AvrII CCTAGG 1 cut(s) 265
BanII GRGCYC 1 cut(s) 219
Bbv12I GWGCWC 1 cut(s) 219
BceAI ACGGC 3 cut(s) 40, 97, 205
BciT130I CCWGG 2 cut(s) 73, 290
BfaI CTAG 1 cut(s) 266
BfoI RGCGCY 1 cut(s) 187
BglI GCCNNNNNGGC 1 cut(s) 249
BisI GCNGC 2 cut(s) 6, 235
BlnI CCTAGG 1 cut(s) 265
BlsI GCNGC 2 cut(s) 7, 236
BmcAI AGTACT 1 cut(s) 32
Bme1390I CCNGG 2 cut(s) 73, 290
Bme18I GGWCC 2 cut(s) 112, 262
BmgT120I GGNCC 3 cut(s) 75, 112, 262
BmiI GGNNCC 3 cut(s) 85, 113, 253
BmrFI CCNGG 2 cut(s) 73, 290
BmsI GCATC 1 cut(s) 246
BpmI CTGGAG 1 cut(s) 70
Bpu14I TTCGAA 1 cut(s) 153
BsaJI CCNNGG 2 cut(s) 202, 265
BsaXI ACNNNNNCTCC 4 cut(s) 128, 158, 236, 266
Bsc4I CCNNNNNNNGG 2 cut(s) 93, 175
Bse118I RCCGGY 1 cut(s) 248
Bse1I ACTGG 1 cut(s) 38
BseBI CCWGG 2 cut(s) 73, 290
BseDI CCNNGG 2 cut(s) 202, 265
BseLI CCNNNNNNNGG 2 cut(s) 93, 175
BseNI ACTGG 1 cut(s) 38
Bsh1236I CGCG 2 cut(s) 39, 57
BshFI GGCC 1 cut(s) 76
BsiHKAI GWGCWC 1 cut(s) 219
BsiSI CCGG 1 cut(s) 249
BslI CCNNNNNNNGG 2 cut(s) 93, 175
BsnI GGCC 1 cut(s) 76
Bsp119I TTCGAA 1 cut(s) 153
Bsp1286I GDGCHC 1 cut(s) 219
Bsp143I GATC 1 cut(s) 123
BspACI CCGC 3 cut(s) 55, 147, 234
BspANI GGCC 1 cut(s) 76
BspFNI CGCG 2 cut(s) 39, 57
BspLI GGNNCC 3 cut(s) 85, 113, 253
BspT104I TTCGAA 1 cut(s) 153
BsrFI RCCGGY 1 cut(s) 248
BsrI ACTGG 1 cut(s) 38
BssAI RCCGGY 1 cut(s) 248
BssECI CCNNGG 2 cut(s) 202, 265
BssMI GATC 1 cut(s) 123
BssT1I CCWWGG 1 cut(s) 265
Bst2UI CCWGG 2 cut(s) 73, 290
Bst4CI ACNGT 1 cut(s) 277
Bst6I CTCTTC 2 cut(s) 50, 176
BstBI TTCGAA 1 cut(s) 153
BstDEI CTNAG 1 cut(s) 120
BstFNI CGCG 2 cut(s) 39, 57
BstH2I RGCGCY 1 cut(s) 187
BstHHI GCGC 2 cut(s) 39, 186
BstKTI GATC 1 cut(s) 126
BstMBI GATC 1 cut(s) 123
BstMWI GCNNNNNNNGC 2 cut(s) 240, 249
BstNI CCWGG 2 cut(s) 73, 290
BstSCI CCNGG 2 cut(s) 71, 288
BstUI CGCG 2 cut(s) 39, 57
BsuRI GGCC 1 cut(s) 76
BtsI GCAGTG 1 cut(s) 229
BtsIMutI CAGTG 1 cut(s) 229
CaiI CAGNNNCTG 1 cut(s) 93
CfoI GCGC 2 cut(s) 39, 186
Cfr10I RCCGGY 1 cut(s) 248
Cfr13I GGNCC 3 cut(s) 75, 112, 262
CseI GACGC 2 cut(s) 46, 79
Csp6I GTAC 1 cut(s) 31
CviAII CATG 2 cut(s) 208, 271
CviJI RGCY 7 cut(s) 5, 76, 84, 217, 243, 252, 288
CviKI_1 RGCY 7 cut(s) 5, 76, 84, 217, 243, 252, 288
CviQI GTAC 1 cut(s) 31
DdeI CTNAG 1 cut(s) 120
DpnI GATC 1 cut(s) 125
DpnII GATC 1 cut(s) 123
DrdI GACNNNNNNGTC 1 cut(s) 56
DseDI GACNNNNNNGTC 1 cut(s) 56
Eam1104I CTCTTC 2 cut(s) 50, 176
EarI CTCTTC 2 cut(s) 50, 176
EciI GGCGGA 1 cut(s) 136
Ecl136II GAGCTC 1 cut(s) 217
Eco130I CCWWGG 1 cut(s) 265
Eco24I GRGCYC 1 cut(s) 219
Eco47I GGWCC 2 cut(s) 112, 262
Eco47III AGCGCT 1 cut(s) 185
Eco53kI GAGCTC 1 cut(s) 217
EcoICRI GAGCTC 1 cut(s) 217
EcoO109I RGGNCCY 2 cut(s) 112, 262
EcoRII CCWGG 2 cut(s) 71, 288
EcoT14I CCWWGG 1 cut(s) 265
EcoT38I GRGCYC 1 cut(s) 219
ErhI CCWWGG 1 cut(s) 265
FaeI CATG 2 cut(s) 211, 274
FaiI YATR 2 cut(s) 209, 272
FatI CATG 2 cut(s) 207, 270
FauI CCCGC 1 cut(s) 62
Fnu4HI GCNGC 2 cut(s) 6, 235
FriOI GRGCYC 1 cut(s) 219
Fsp4HI GCNGC 2 cut(s) 6, 235
FspBI CTAG 1 cut(s) 266
GlaI GCGC 2 cut(s) 38, 185
GluI GCNGC 2 cut(s) 6, 235
GsuI CTGGAG 1 cut(s) 70
HaeII RGCGCY 1 cut(s) 187
HaeIII GGCC 1 cut(s) 76
HapII CCGG 1 cut(s) 249
HgaI GACGC 2 cut(s) 46, 79
HhaI GCGC 2 cut(s) 39, 186
Hin1II CATG 2 cut(s) 211, 274
Hin6I GCGC 2 cut(s) 37, 184
HinP1I GCGC 2 cut(s) 37, 184
HinfI GANTC 1 cut(s) 50
HpaII CCGG 1 cut(s) 249
HphI GGTGA 1 cut(s) 290
Hpy188III TCNNGA 1 cut(s) 13
Hpy99I CGWCG 3 cut(s) 26, 62, 137
HpyAV CCTTC 3 cut(s) 149, 160, 265
HpyCH4III ACNGT 1 cut(s) 277
HpyF10VI GCNNNNNNNGC 2 cut(s) 240, 249
HpyF3I CTNAG 1 cut(s) 120
Hsp92II CATG 2 cut(s) 211, 274
HspAI GCGC 2 cut(s) 37, 184
Kzo9I GATC 1 cut(s) 123
LmnI GCTCC 2 cut(s) 89, 257
LweI GCATC 1 cut(s) 246
MaeI CTAG 1 cut(s) 266
MalI GATC 1 cut(s) 125
MboI GATC 1 cut(s) 123
MboII GAAGA 2 cut(s) 37, 163
MhlI GDGCHC 1 cut(s) 219
MlyI GAGTC 1 cut(s) 44
MmeI TCCRAC 1 cut(s) 189
MnlI CCTC 7 cut(s) 20, 53, 125, 179, 212, 290, 311
MspI CCGG 1 cut(s) 249
MspR9I CCNGG 2 cut(s) 73, 290
MvaI CCWGG 2 cut(s) 73, 290
MvnI CGCG 2 cut(s) 39, 57
MwoI GCNNNNNNNGC 2 cut(s) 240, 249
NdeII GATC 1 cut(s) 123
NlaIII CATG 2 cut(s) 211, 274
NlaIV GGNNCC 3 cut(s) 85, 113, 253
NmeAIII GCCGAG 1 cut(s) 183
NspV TTCGAA 1 cut(s) 153
PcsI WCGNNNNNNNCGW 4 cut(s) 54, 87, 132, 210
PflMI CCANNNNNTGG 1 cut(s) 93
PkrI GCNGC 2 cut(s) 7, 236
PleI GAGTC 1 cut(s) 44
PpsI GAGTC 1 cut(s) 44
PpuMI RGGWCCY 2 cut(s) 112, 262
Psp124BI GAGCTC 1 cut(s) 219
Psp5II RGGWCCY 2 cut(s) 112, 262
Psp6I CCWGG 2 cut(s) 71, 288
PspGI CCWGG 2 cut(s) 71, 288
PspN4I GGNNCC 3 cut(s) 85, 113, 253
PspPI GGNCC 3 cut(s) 75, 112, 262
PspPPI RGGWCCY 2 cut(s) 112, 262
PstNI CAGNNNCTG 1 cut(s) 93
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
SacI GAGCTC 1 cut(s) 219
SatI GCNGC 2 cut(s) 6, 235
Sau3AI GATC 1 cut(s) 123
Sau96I GGNCC 3 cut(s) 75, 112, 262
ScaI AGTACT 1 cut(s) 32
SchI GAGTC 1 cut(s) 44
ScrFI CCNGG 2 cut(s) 73, 290
SduI GDGCHC 1 cut(s) 219
SetI ASST 7 cut(s) 45, 74, 171, 219, 267, 294, 303
SfaNI GCATC 1 cut(s) 246
SfuI TTCGAA 1 cut(s) 153
SinI GGWCC 2 cut(s) 112, 262
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
SsiI CCGC 3 cut(s) 55, 147, 234
SspMI CTAG 1 cut(s) 266
SstI GAGCTC 1 cut(s) 219
StyD4I CCNGG 2 cut(s) 71, 288
StyI CCWWGG 1 cut(s) 265
TaaI ACNGT 1 cut(s) 277
TaqI TCGA 4 cut(s) 48, 126, 153, 180
TatI WGTACW 1 cut(s) 30
TauI GCSGC 1 cut(s) 237
TscAI CASTG 1 cut(s) 236
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 1 cut(s) 224
TspRI CASTG 1 cut(s) 236
Van91I CCANNNNNTGG 1 cut(s) 93
VpaK11BI GGWCC 2 cut(s) 112, 262
XmaJI CCTAGG 1 cut(s) 265
XspI CTAG 1 cut(s) 266
ZrmI AGTACT 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.