RLG00000007867

peroxisome organization

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001014
Physical Location & Seq
Forward (+)
22193999 .. 22197125
3127 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007867

Sequence Viewer

Length: 984 bp
ATGTCGCCGGACTGCGACGTCTGCACCTGCTGCGCCTGCCAGAATGGCGGCTCCAACGGTGATAACGCCGAAGATCTGGTCAAATACGTTCCTGTGCTGTCGAGCGATTCCGAGAAGCTACGGCGGGTCGTGACTGCTTCGATTAAGGGTTTCACCATCGGCGCCGGCCTCAAAGGCGGCCTCGCCGTCTTCGCCATCCTAGCTAGACTCAGAAAGAGAAAGCTCTTAGCCTCTCTCAGGACTGAGGGTGCGATTACGAATAATGAAGCGATTGTTACTGCTTTGAAGGAGACCTTGAGATATGGTCTGTTTCTTGGGACTTTTGCAGGCACATTTGTTTCAGTGGATGAGATTATTGCTTCTTTGGGAGGCCACCGAAGGACAGCAAAGTGGAGGGCTTTGTTAGCAGGGCTTATAGTAGGACCGTCTATGCTTCTTACCGGGCATAACACGCAGCATACGAGCTTGGCCGTATACATACTTATGCGTGCTGCCGTGTTGGCCACGCGCTGTGGGATTAAAAGCAAACGGTACAAATGTCTCGATGTTAAGAACAAGGGGACCAAAACCAAGTTTGTCTTTGCAAGCCCAGCCAAATCTGCAGAGATCCTTTTCAAGTATATTTCTGCTGAGCATGTTCCTGTAAAATATGGAGGTTTGAGTGTGGATTACTGTGAGTGCAACCCAGAATTCACCATTGCTGATCCAGTCACTAAAGTAACCATCAAACTTGGGACAAAGAAGACTCAGGAAATTATAATTTATGAGAAATGTTCACGAAGTGCACCATCATATGGGAACTCTGTAGTTGGGTGGGATGTGAGCTATGGAGCTGAATTTGTTCCTGTTCCTGACTCTATACTAATCATTCAAACAGCCACAAAGATGACTCCATCTGATGAACCATTAAAAGGGATTTCACAGTTTGTTGGAGCTTCAACAGGAACTTGGAATCTTAAAATCCCTGTCAAAGACACTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TMEM135_C_rich

Protein Analysis

328

Amino Acids

35.18

Weight (kDa)

9.36

Isoelectric Point (pI)

33.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GOLD_PATL1_C PF25099 245 - 303 6e-07 Patellin-1-like, C-terminal GOLD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 758
AarI CACCTGC 1 cut(s) 35
AasI GACNNNNNNGTC 1 cut(s) 17
AatII GACGTC 1 cut(s) 21
Acc36I ACCTGC 1 cut(s) 35
AccB1I GGYRCC 1 cut(s) 161
AccB7I CCANNNNNTGG 1 cut(s) 794
AccI GTMKAC 1 cut(s) 474
AccII CGCG 1 cut(s) 508
AciI CCGC 3 cut(s) 48, 124, 177
AclWI GGATC 2 cut(s) 601, 698
AcoI YGGCCR 2 cut(s) 468, 501
AcsI RAATTY 2 cut(s) 689, 836
AcyI GRCGYC 2 cut(s) 18, 162
AdeI CACNNNGTG 2 cut(s) 782, 981
AfaI GTAC 1 cut(s) 533
AfiI CCNNNNNNNGG 3 cut(s) 237, 794, 911
AgsI TTSAA 4 cut(s) 286, 616, 872, 939
AluBI AGCT 7 cut(s) 118, 203, 223, 465, 825, 833, 935
AluI AGCT 7 cut(s) 118, 203, 223, 465, 825, 833, 935
Alw21I GWGCWC 1 cut(s) 787
Alw26I GTCTC 2 cut(s) 284, 545
Alw44I GTGCAC 1 cut(s) 783
AlwI GGATC 2 cut(s) 601, 698
AoxI GGCC 5 cut(s) 166, 178, 370, 468, 501
ApaLI GTGCAC 1 cut(s) 783
ApeKI GCWGC 3 cut(s) 30, 454, 491
ApoI RAATTY 2 cut(s) 689, 836
ArsI GACNNNNNNTTYG 2 cut(s) 63, 95
Asp700I GAANNNNTTC 1 cut(s) 840
AspLEI GCGC 3 cut(s) 35, 164, 510
AspS9I GGNCC 2 cut(s) 422, 561
AsuC2I CCSGG 1 cut(s) 442
AsuHPI GGTGA 3 cut(s) 71, 145, 685
AvaII GGWCC 2 cut(s) 422, 561
BaeGI GKGCMC 1 cut(s) 787
BaeI ACNNNNGTAYC 2 cut(s) 523, 556
BalI TGGCCA 1 cut(s) 503
BanI GGYRCC 1 cut(s) 161
BbsI GAAGAC 2 cut(s) 181, 749
Bbv12I GWGCWC 1 cut(s) 787
BbvI GCAGC 3 cut(s) 17, 466, 478
BccI CCATC 5 cut(s) 164, 203, 731, 796, 901
BceAI ACGGC 4 cut(s) 137, 170, 455, 479
BcnI CCSGG 1 cut(s) 442
BcoDI GTCTC 2 cut(s) 284, 545
BfaI CTAG 2 cut(s) 200, 204
BfmI CTRYAG 2 cut(s) 600, 804
BfoI RGCGCY 1 cut(s) 165
BfuAI ACCTGC 1 cut(s) 35
BglI GCCNNNNNGGC 3 cut(s) 45, 174, 500
BglII AGATCT 1 cut(s) 73
BisI GCNGC 5 cut(s) 31, 49, 178, 455, 492
BlpI GCTNAGC 1 cut(s) 630
BlsI GCNGC 5 cut(s) 32, 50, 179, 456, 493
Bme1390I CCNGG 1 cut(s) 442
Bme18I GGWCC 2 cut(s) 422, 561
BmgT120I GGNCC 2 cut(s) 422, 561
BmiI GGNNCC 3 cut(s) 52, 163, 562
BmrFI CCNGG 1 cut(s) 442
BpiI GAAGAC 2 cut(s) 181, 749
Bpu1102I GCTNAGC 1 cut(s) 630
BpuEI CTTGAG 1 cut(s) 316
BpuMI CCSGG 1 cut(s) 442
BsaHI GRCGYC 2 cut(s) 18, 162
BsaI GGTCTC 1 cut(s) 284
Bsc4I CCNNNNNNNGG 3 cut(s) 237, 794, 911
Bse118I RCCGGY 1 cut(s) 164
Bse1I ACTGG 1 cut(s) 707
Bse3DI GCAATG 1 cut(s) 696
BseGI GGATG 3 cut(s) 195, 352, 823
BseLI CCNNNNNNNGG 3 cut(s) 237, 794, 911
BseMI GCAATG 1 cut(s) 696
BseMII CTCAG 5 cut(s) 223, 234, 250, 621, 761
BseNI ACTGG 1 cut(s) 707
BseSI GKGCMC 1 cut(s) 787
BseXI GCAGC 3 cut(s) 17, 466, 478
BseYI CCCAGC 1 cut(s) 589
BsgI GTGCAG 1 cut(s) 7
Bsh1236I CGCG 1 cut(s) 508
BshFI GGCC 5 cut(s) 168, 180, 372, 470, 503
BshNI GGYRCC 1 cut(s) 161
BsiHKAI GWGCWC 1 cut(s) 787
BsiSI CCGG 3 cut(s) 8, 165, 441
BslFI GGGAC 3 cut(s) 331, 574, 748
BslI CCNNNNNNNGG 3 cut(s) 237, 794, 911
BsmAI GTCTC 2 cut(s) 284, 545
BsmFI GGGAC 3 cut(s) 331, 574, 748
BsnI GGCC 5 cut(s) 168, 180, 372, 470, 503
Bso31I GGTCTC 1 cut(s) 284
Bsp1286I GDGCHC 1 cut(s) 787
Bsp143I GATC 3 cut(s) 73, 606, 703
Bsp1720I GCTNAGC 1 cut(s) 630
BspACI CCGC 3 cut(s) 48, 124, 177
BspANI GGCC 5 cut(s) 168, 180, 372, 470, 503
BspCNI CTCAG 5 cut(s) 222, 235, 249, 622, 760
BspFNI CGCG 1 cut(s) 508
BspLI GGNNCC 3 cut(s) 52, 163, 562
BspMAI CTGCAG 1 cut(s) 604
BspMI ACCTGC 1 cut(s) 35
BspPI GGATC 2 cut(s) 601, 698
BspT107I GGYRCC 1 cut(s) 161
BspTNI GGTCTC 1 cut(s) 284
BsrDI GCAATG 1 cut(s) 696
BsrFI RCCGGY 1 cut(s) 164
BsrI ACTGG 1 cut(s) 707
BssAI RCCGGY 1 cut(s) 164
BssMI GATC 3 cut(s) 73, 606, 703
BssNAI GTATAC 1 cut(s) 475
BssNI GRCGYC 2 cut(s) 18, 162
Bst1107I GTATAC 1 cut(s) 475
Bst4CI ACNGT 5 cut(s) 59, 426, 531, 674, 924
BstACI GRCGYC 2 cut(s) 18, 162
BstAPI GCANNNNNTGC 1 cut(s) 30
BstC8I GCNNGC 5 cut(s) 37, 166, 328, 489, 586
BstDEI CTNAG 7 cut(s) 209, 226, 236, 243, 630, 747, 978
BstENI CCTNNNNNAGG 1 cut(s) 235
BstF5I GGATG 3 cut(s) 195, 352, 823
BstFNI CGCG 1 cut(s) 508
BstH2I RGCGCY 1 cut(s) 165
BstHHI GCGC 3 cut(s) 35, 164, 510
BstKTI GATC 3 cut(s) 76, 609, 706
BstMAI GTCTC 2 cut(s) 284, 545
BstMBI GATC 3 cut(s) 73, 606, 703
BstNSI RCATGY 1 cut(s) 638
BstSCI CCNGG 1 cut(s) 440
BstSFI CTRYAG 2 cut(s) 600, 804
BstSLI GKGCMC 1 cut(s) 787
BstUI CGCG 1 cut(s) 508
BstV1I GCAGC 3 cut(s) 17, 466, 478
BstV2I GAAGAC 2 cut(s) 181, 749
BstX2I RGATCY 2 cut(s) 73, 606
BstYI RGATCY 2 cut(s) 73, 606
BstZ17I GTATAC 1 cut(s) 475
BsuRI GGCC 5 cut(s) 168, 180, 372, 470, 503
BtsCI GGATG 3 cut(s) 195, 352, 823
BtsIMutI CAGTG 1 cut(s) 348
BveI ACCTGC 1 cut(s) 35
Cac8I GCNNGC 5 cut(s) 37, 166, 328, 489, 586
CfoI GCGC 3 cut(s) 35, 164, 510
Cfr10I RCCGGY 1 cut(s) 164
Cfr13I GGNCC 2 cut(s) 422, 561
Csp6I GTAC 1 cut(s) 532
CviAII CATG 1 cut(s) 635
CviQI GTAC 1 cut(s) 532
DdeI CTNAG 7 cut(s) 209, 226, 236, 243, 630, 747, 978
DinI GGCGCC 1 cut(s) 163
DpnI GATC 3 cut(s) 75, 608, 705
DpnII GATC 3 cut(s) 73, 606, 703
DraIII CACNNNGTG 2 cut(s) 782, 981
DrdI GACNNNNNNGTC 1 cut(s) 17
DseDI GACNNNNNNGTC 1 cut(s) 17
EaeI YGGCCR 2 cut(s) 468, 501
Eco31I GGTCTC 1 cut(s) 284
Eco47I GGWCC 2 cut(s) 422, 561
EcoNI CCTNNNNNAGG 1 cut(s) 235
EcoRI GAATTC 1 cut(s) 689
EgeI GGCGCC 1 cut(s) 163
EheI GGCGCC 1 cut(s) 163
FaeI CATG 1 cut(s) 638
FalI AAGNNNNNCTT 4 cut(s) 278, 310, 563, 595
FaqI GGGAC 3 cut(s) 331, 574, 748
FatI CATG 1 cut(s) 634
FauI CCCGC 1 cut(s) 117
FauNDI CATATG 1 cut(s) 793
FblI GTMKAC 1 cut(s) 474
Fnu4HI GCNGC 5 cut(s) 31, 49, 178, 455, 492
FokI GGATG 3 cut(s) 182, 359, 830
Fsp4HI GCNGC 5 cut(s) 31, 49, 178, 455, 492
FspBI CTAG 2 cut(s) 200, 204
GlaI GCGC 3 cut(s) 34, 163, 509
GluI GCNGC 5 cut(s) 31, 49, 178, 455, 492
GsaI CCCAGC 1 cut(s) 593
HaeII RGCGCY 1 cut(s) 165
HaeIII GGCC 5 cut(s) 168, 180, 372, 470, 503
HapII CCGG 3 cut(s) 8, 165, 441
HhaI GCGC 3 cut(s) 35, 164, 510
Hin1I GRCGYC 2 cut(s) 18, 162
Hin1II CATG 1 cut(s) 638
Hin6I GCGC 3 cut(s) 33, 162, 508
HinP1I GCGC 3 cut(s) 33, 162, 508
HinfI GANTC 6 cut(s) 107, 207, 745, 854, 889, 952
HpaII CCGG 3 cut(s) 8, 165, 441
HphI GGTGA 3 cut(s) 71, 145, 685
Hpy166II GTNNAC 3 cut(s) 475, 776, 785
Hpy188I TCNGA 3 cut(s) 112, 212, 898
Hpy188III TCNNGA 6 cut(s) 130, 238, 542, 749, 777, 851
Hpy8I GTNNAC 3 cut(s) 475, 776, 785
Hpy99I CGWCG 1 cut(s) 20
HpyAV CCTTC 2 cut(s) 280, 372
HpyCH4III ACNGT 5 cut(s) 59, 426, 531, 674, 924
HpyCH4IV ACGT 2 cut(s) 18, 87
HpyCH4V TGCA 6 cut(s) 24, 326, 584, 602, 681, 785
HpyF3I CTNAG 7 cut(s) 209, 226, 236, 243, 630, 747, 978
HpySE526I ACGT 2 cut(s) 18, 87
Hsp92I GRCGYC 2 cut(s) 18, 162
Hsp92II CATG 1 cut(s) 638
HspAI GCGC 3 cut(s) 33, 162, 508
KasI GGCGCC 1 cut(s) 161
KroI GCCGGC 1 cut(s) 164
KroNI GCCGGC 1 cut(s) 166
Kzo9I GATC 3 cut(s) 73, 606, 703
LmnI GCTCC 3 cut(s) 56, 830, 932
Lsp1109I GCAGC 3 cut(s) 17, 466, 478
MaeI CTAG 2 cut(s) 200, 204
MaeII ACGT 2 cut(s) 18, 87
MaeIII GTNAC 4 cut(s) 130, 274, 709, 718
MalI GATC 3 cut(s) 75, 608, 705
MboI GATC 3 cut(s) 73, 606, 703
MboII GAAGA 3 cut(s) 83, 181, 754
MflI RGATCY 2 cut(s) 73, 606
MhlI GDGCHC 1 cut(s) 787
MlsI TGGCCA 1 cut(s) 503
MluCI AATT 4 cut(s) 689, 753, 759, 836
MluNI TGGCCA 1 cut(s) 503
Mly113I GGCGCC 1 cut(s) 162
MlyI GAGTC 4 cut(s) 201, 739, 848, 883
MmeI TCCRAC 2 cut(s) 78, 910
MnlI CCTC 7 cut(s) 179, 191, 238, 241, 362, 387, 647
Mox20I TGGCCA 1 cut(s) 503
MroNI GCCGGC 1 cut(s) 164
MroXI GAANNNNTTC 1 cut(s) 840
MscI TGGCCA 1 cut(s) 503
MseI TTAA 5 cut(s) 144, 519, 549, 908, 957
MslI CAYNNNNRTG 2 cut(s) 482, 884
Msp20I TGGCCA 1 cut(s) 503
MspI CCGG 3 cut(s) 8, 165, 441
MspR9I CCNGG 1 cut(s) 442
MvnI CGCG 1 cut(s) 508
NaeI GCCGGC 1 cut(s) 166
NarI GGCGCC 1 cut(s) 162
NciI CCSGG 1 cut(s) 442
NdeI CATATG 1 cut(s) 793
NdeII GATC 3 cut(s) 73, 606, 703
NgoMIV GCCGGC 1 cut(s) 164
NlaIII CATG 1 cut(s) 638
NlaIV GGNNCC 3 cut(s) 52, 163, 562
NmuCI GTSAC 2 cut(s) 130, 709
NspI RCATGY 1 cut(s) 638
PaqCI CACCTGC 1 cut(s) 35
PcsI WCGNNNNNNNCGW 1 cut(s) 458
PdiI GCCGGC 1 cut(s) 166
PdmI GAANNNNTTC 1 cut(s) 840
PfeI GAWTC 2 cut(s) 107, 952
PflMI CCANNNNNTGG 1 cut(s) 794
PkrI GCNGC 5 cut(s) 32, 50, 179, 456, 493
PleI GAGTC 4 cut(s) 201, 739, 848, 883
PluTI GGCGCC 1 cut(s) 165
PpsI GAGTC 4 cut(s) 201, 739, 848, 883
PsiI TTATAA 1 cut(s) 758
PspFI CCCAGC 1 cut(s) 589
PspN4I GGNNCC 3 cut(s) 52, 163, 562
PspPI GGNCC 2 cut(s) 422, 561
PstI CTGCAG 1 cut(s) 604
PsuI RGATCY 2 cut(s) 73, 606
RsaI GTAC 1 cut(s) 533
RsaNI GTAC 1 cut(s) 532
RseI CAYNNNNRTG 2 cut(s) 482, 884
SaqAI TTAA 5 cut(s) 144, 519, 549, 908, 957
SatI GCNGC 5 cut(s) 31, 49, 178, 455, 492
Sau3AI GATC 3 cut(s) 73, 606, 703
Sau96I GGNCC 2 cut(s) 422, 561
SchI GAGTC 4 cut(s) 201, 739, 848, 883
ScrFI CCNGG 1 cut(s) 442
SduI GDGCHC 1 cut(s) 787
SfcI CTRYAG 2 cut(s) 600, 804
SfoI GGCGCC 1 cut(s) 163
SinI GGWCC 2 cut(s) 422, 561
SmiMI CAYNNNNRTG 2 cut(s) 482, 884
SmlI CTYRAG 1 cut(s) 295
SmoI CTYRAG 1 cut(s) 295
Sse9I AATT 4 cut(s) 689, 753, 759, 836
SsiI CCGC 3 cut(s) 48, 124, 177
SspDI GGCGCC 1 cut(s) 161
SspMI CTAG 2 cut(s) 200, 204
StyD4I CCNGG 1 cut(s) 440
TaaI ACNGT 5 cut(s) 59, 426, 531, 674, 924
TaiI ACGT 2 cut(s) 21, 90
TaqI TCGA 3 cut(s) 101, 140, 543
TasI AATT 4 cut(s) 689, 753, 759, 836
TauI GCSGC 2 cut(s) 51, 180
TfiI GAWTC 2 cut(s) 107, 952
Tru1I TTAA 5 cut(s) 144, 519, 549, 908, 957
Tru9I TTAA 5 cut(s) 144, 519, 549, 908, 957
TscAI CASTG 1 cut(s) 348
TseFI GTSAC 2 cut(s) 130, 709
TseI GCWGC 3 cut(s) 30, 454, 491
Tsp45I GTSAC 2 cut(s) 130, 709
TspDTI ATGAA 2 cut(s) 279, 915
TspRI CASTG 1 cut(s) 348
Van91I CCANNNNNTGG 1 cut(s) 794
VneI GTGCAC 1 cut(s) 783
VpaK11BI GGWCC 2 cut(s) 422, 561
XagI CCTNNNNNAGG 1 cut(s) 235
XapI RAATTY 2 cut(s) 689, 836
XceI RCATGY 1 cut(s) 638
XmiI GTMKAC 1 cut(s) 474
XmnI GAANNNNTTC 1 cut(s) 840
XspI CTAG 2 cut(s) 200, 204
ZraI GACGTC 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.