Rorug05G0232900

peroxisome organization

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0001014
Physical Location & Seq
Reverse (-)
24275149 .. 24275406
258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0232900.1

Sequence Viewer

Length: 258 bp
ATGGCTATGGCGGCTTCTTTGCCCCACAAATTCGGCGATTTGATTGCGTTCAAGCTCGATTTATCGAGCAATTACATCATCTGGAAGTACGCAATGGCGATGCTTCTTCAAGCCTTCAACCTCTACGGTTATGTAGATGGGACCTTCGAGAACGACAACGGGGTTGCCGGCGAGACGGCGCTCACAAGAATGAGGACCACGGCGATGAGGAAGATGTTCGATTTGATGCCGCCGACGACAAGGCCGTCATGGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TMEM135_C_rich

Protein Analysis

85

Amino Acids

9.63

Weight (kDa)

8.06

Isoelectric Point (pI)

36.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 244
AciI CCGC 2 cut(s) 11, 230
AcsI RAATTY 1 cut(s) 29
AfaI GTAC 1 cut(s) 89
AgsI TTSAA 3 cut(s) 52, 110, 118
AluBI AGCT 1 cut(s) 55
AluI AGCT 1 cut(s) 55
Alw26I GTCTC 1 cut(s) 167
AoxI GGCC 1 cut(s) 242
ApoI RAATTY 1 cut(s) 29
Asp700I GAANNNNTTC 1 cut(s) 215
AspLEI GCGC 1 cut(s) 181
AspS9I GGNCC 2 cut(s) 141, 195
AvaII GGWCC 2 cut(s) 141, 195
BccI CCATC 1 cut(s) 131
BceAI ACGGC 3 cut(s) 192, 216, 229
BcgI CGANNNNNNTGC 2 cut(s) 26, 60
BcoDI GTCTC 1 cut(s) 167
BfoI RGCGCY 1 cut(s) 182
BglI GCCNNNNNGGC 1 cut(s) 250
BisI GCNGC 2 cut(s) 12, 230
BlsI GCNGC 2 cut(s) 13, 231
Bme18I GGWCC 2 cut(s) 141, 195
BmgT120I GGNCC 2 cut(s) 141, 195
BmiI GGNNCC 1 cut(s) 142
BmsI GCATC 2 cut(s) 90, 216
BsaJI CCNNGG 1 cut(s) 198
Bse118I RCCGGY 1 cut(s) 167
Bse3DI GCAATG 1 cut(s) 99
BseDI CCNNGG 1 cut(s) 198
BseMI GCAATG 1 cut(s) 99
BshFI GGCC 1 cut(s) 244
BsiSI CCGG 1 cut(s) 168
BslFI GGGAC 1 cut(s) 154
BsmAI GTCTC 1 cut(s) 167
BsmBI CGTCTC 1 cut(s) 167
BsmFI GGGAC 1 cut(s) 154
BsnI GGCC 1 cut(s) 244
BspACI CCGC 2 cut(s) 11, 230
BspANI GGCC 1 cut(s) 244
BspLI GGNNCC 1 cut(s) 142
BsrDI GCAATG 1 cut(s) 99
BsrFI RCCGGY 1 cut(s) 167
BssAI RCCGGY 1 cut(s) 167
BssECI CCNNGG 1 cut(s) 198
Bst4CI ACNGT 1 cut(s) 128
BstC8I GCNNGC 1 cut(s) 169
BstDSI CCRYGG 1 cut(s) 198
BstH2I RGCGCY 1 cut(s) 182
BstHHI GCGC 1 cut(s) 181
BstMAI GTCTC 1 cut(s) 167
BstMWI GCNNNNNNNGC 2 cut(s) 11, 250
BsuRI GGCC 1 cut(s) 244
BtgI CCRYGG 1 cut(s) 198
BtgZI GCGATG 2 cut(s) 113, 218
Cac8I GCNNGC 1 cut(s) 169
CfoI GCGC 1 cut(s) 181
Cfr10I RCCGGY 1 cut(s) 167
Cfr13I GGNCC 2 cut(s) 141, 195
Csp6I GTAC 1 cut(s) 88
CviAII CATG 1 cut(s) 249
CviJI RGCY 6 cut(s) 5, 14, 55, 113, 244, 253
CviKI_1 RGCY 6 cut(s) 5, 14, 55, 113, 244, 253
CviQI GTAC 1 cut(s) 88
DrdI GACNNNNNNGTC 1 cut(s) 244
DseDI GACNNNNNNGTC 1 cut(s) 244
Eco47I GGWCC 2 cut(s) 141, 195
EcoO109I RGGNCCY 1 cut(s) 141
Esp3I CGTCTC 1 cut(s) 167
FaeI CATG 1 cut(s) 252
FaiI YATR 3 cut(s) 8, 132, 250
FaqI GGGAC 1 cut(s) 154
FatI CATG 1 cut(s) 248
Fnu4HI GCNGC 2 cut(s) 12, 230
Fsp4HI GCNGC 2 cut(s) 12, 230
GlaI GCGC 1 cut(s) 180
GluI GCNGC 2 cut(s) 12, 230
HaeII RGCGCY 1 cut(s) 182
HaeIII GGCC 1 cut(s) 244
HapII CCGG 1 cut(s) 168
HhaI GCGC 1 cut(s) 181
Hin1II CATG 1 cut(s) 252
Hin6I GCGC 1 cut(s) 179
HinP1I GCGC 1 cut(s) 179
HpaII CCGG 1 cut(s) 168
Hpy188I TCNGA 1 cut(s) 257
Hpy188III TCNNGA 2 cut(s) 82, 148
Hpy99I CGWCG 1 cut(s) 238
HpyAV CCTTC 2 cut(s) 124, 154
HpyCH4III ACNGT 1 cut(s) 128
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 250
Hsp92II CATG 1 cut(s) 252
HspAI GCGC 1 cut(s) 179
KroI GCCGGC 1 cut(s) 167
KroNI GCCGGC 1 cut(s) 169
LpnPI CCDG 2 cut(s) 67, 181
LweI GCATC 2 cut(s) 90, 216
MboII GAAGA 2 cut(s) 98, 223
MluCI AATT 2 cut(s) 29, 70
MnlI CCTC 3 cut(s) 131, 186, 201
MroNI GCCGGC 1 cut(s) 167
MroXI GAANNNNTTC 1 cut(s) 215
MslI CAYNNNNRTG 2 cut(s) 188, 203
MspI CCGG 1 cut(s) 168
MwoI GCNNNNNNNGC 2 cut(s) 11, 250
NaeI GCCGGC 1 cut(s) 169
NgoMIV GCCGGC 1 cut(s) 167
NlaIII CATG 1 cut(s) 252
NlaIV GGNNCC 1 cut(s) 142
PcsI WCGNNNNNNNCGW 1 cut(s) 242
PdiI GCCGGC 1 cut(s) 169
PdmI GAANNNNTTC 1 cut(s) 215
PkrI GCNGC 2 cut(s) 13, 231
PpuMI RGGWCCY 1 cut(s) 141
Psp5II RGGWCCY 1 cut(s) 141
PspN4I GGNNCC 1 cut(s) 142
PspPI GGNCC 2 cut(s) 141, 195
PspPPI RGGWCCY 1 cut(s) 141
RsaI GTAC 1 cut(s) 89
RsaNI GTAC 1 cut(s) 88
RseI CAYNNNNRTG 2 cut(s) 188, 203
SatI GCNGC 2 cut(s) 12, 230
Sau96I GGNCC 2 cut(s) 141, 195
SetI ASST 3 cut(s) 57, 123, 146
SfaNI GCATC 2 cut(s) 90, 216
SinI GGWCC 2 cut(s) 141, 195
SmiMI CAYNNNNRTG 2 cut(s) 188, 203
Sse9I AATT 2 cut(s) 29, 70
SsiI CCGC 2 cut(s) 11, 230
TaaI ACNGT 1 cut(s) 128
TaqI TCGA 4 cut(s) 57, 65, 147, 219
TasI AATT 2 cut(s) 29, 70
TauI GCSGC 2 cut(s) 14, 232
VpaK11BI GGWCC 2 cut(s) 141, 195
XapI RAATTY 1 cut(s) 29
XmnI GAANNNNTTC 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.