Rh2AG216800

peroxisome organization

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001014
Physical Location & Seq
Reverse (-)
22104530 .. 22119675
15146 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG216800.1

Sequence Viewer

Length: 594 bp
ATGACTGCTTCGATTAAGGGTTTTACCATCGGCGCTGGCCTCAAAGGCGGCCTCGCCGTCTTCTCCATCCTAGCTAGACTCAAAAAGAGAAAGCTCTTAGCCTCTCTCAGGACTGAGGGTGCGATTACGAATGAAGCAATTGTTACTGTTTTGAAGGAGACCTTGAGATGTGGTCTGTTTCTTGGGACTTTTGCAGGCACATTTGTTTCAGTGGATGAGATTATTGCTTCTTTGGAAGGCCACCGTAGGACAGCTAAGTGGAGGGCTTTGTTAGCAGGGCTTATAGCAGGACCGTCTATGCTTCTTACCGGGCATAACACGCATCATACGAGCTTGGCCGTATACATACTTATGCGTGCTGCCGTGTTAGCCACGCGTTATGGGATTAAAAGCAAACGGTTTGGTCGTGTTTGTAGACCTCTCACTTGGAAGCATGGTGACATTTTCCTTATGTGTCTCTCCTCTTCGCAAATTCTAACATTGATAAATCCCTCTGGTGAAATGTCCTGTGCTGAAGAGACTGAATTTGAACTGCATAAGAATAATGAAGGTACCTTCAATCCGAGTCAGATGGAGCCTCACCTCTCTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TMEM135_C_rich

Protein Analysis

197

Amino Acids

21.41

Weight (kDa)

9.73

Isoelectric Point (pI)

30.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 551
AccB1I GGYRCC 1 cut(s) 551
AccI GTMKAC 2 cut(s) 342, 415
AccII CGCG 1 cut(s) 376
AciI CCGC 1 cut(s) 48
AcoI YGGCCR 1 cut(s) 336
AcsI RAATTY 2 cut(s) 471, 524
AcuI CTGAAG 1 cut(s) 534
AfaI GTAC 1 cut(s) 553
AfiI CCNNNNNNNGG 1 cut(s) 108
AflIII ACRYGT 1 cut(s) 374
AgsI TTSAA 3 cut(s) 154, 530, 559
AluBI AGCT 4 cut(s) 74, 94, 254, 333
AluI AGCT 4 cut(s) 74, 94, 254, 333
Alw26I GTCTC 3 cut(s) 152, 461, 512
AoxI GGCC 4 cut(s) 37, 49, 238, 336
ApeKI GCWGC 1 cut(s) 359
ApoI RAATTY 2 cut(s) 471, 524
Asp718I GGTACC 1 cut(s) 551
AspLEI GCGC 1 cut(s) 35
AspS9I GGNCC 1 cut(s) 290
AsuC2I CCSGG 1 cut(s) 310
AsuHPI GGTGA 3 cut(s) 449, 509, 572
AvaII GGWCC 1 cut(s) 290
BanI GGYRCC 1 cut(s) 551
BbsI GAAGAC 1 cut(s) 52
BbvI GCAGC 1 cut(s) 346
BccI CCATC 3 cut(s) 35, 74, 565
BceAI ACGGC 3 cut(s) 41, 323, 347
BcnI CCSGG 1 cut(s) 310
BcoDI GTCTC 3 cut(s) 152, 461, 512
BfaI CTAG 2 cut(s) 71, 75
BfoI RGCGCY 1 cut(s) 36
BglI GCCNNNNNGGC 1 cut(s) 45
BisI GCNGC 2 cut(s) 49, 360
BlsI GCNGC 2 cut(s) 50, 361
Bme1390I CCNGG 1 cut(s) 310
Bme18I GGWCC 1 cut(s) 290
BmgT120I GGNCC 1 cut(s) 290
BmiI GGNNCC 2 cut(s) 553, 576
BmrFI CCNGG 1 cut(s) 310
BmsI GCATC 1 cut(s) 331
BpiI GAAGAC 1 cut(s) 52
BpuEI CTTGAG 1 cut(s) 184
BpuMI CCSGG 1 cut(s) 310
BsaI GGTCTC 1 cut(s) 152
Bsc4I CCNNNNNNNGG 1 cut(s) 108
BseGI GGATG 2 cut(s) 66, 220
BseLI CCNNNNNNNGG 1 cut(s) 108
BseMII CTCAG 2 cut(s) 105, 121
BseRI GAGGAG 1 cut(s) 451
BseXI GCAGC 1 cut(s) 346
Bsh1236I CGCG 1 cut(s) 376
BshFI GGCC 4 cut(s) 39, 51, 240, 338
BshNI GGYRCC 1 cut(s) 551
BsiSI CCGG 1 cut(s) 309
BslFI GGGAC 1 cut(s) 199
BslI CCNNNNNNNGG 1 cut(s) 108
BsmAI GTCTC 3 cut(s) 152, 461, 512
BsmFI GGGAC 1 cut(s) 199
BsnI GGCC 4 cut(s) 39, 51, 240, 338
Bso31I GGTCTC 1 cut(s) 152
BspACI CCGC 1 cut(s) 48
BspANI GGCC 4 cut(s) 39, 51, 240, 338
BspCNI CTCAG 2 cut(s) 106, 120
BspFNI CGCG 1 cut(s) 376
BspLI GGNNCC 2 cut(s) 553, 576
BspT107I GGYRCC 1 cut(s) 551
BspTNI GGTCTC 1 cut(s) 152
BssNAI GTATAC 1 cut(s) 343
Bst1107I GTATAC 1 cut(s) 343
Bst4CI ACNGT 4 cut(s) 148, 245, 294, 399
Bst6I CTCTTC 2 cut(s) 469, 510
BstC8I GCNNGC 3 cut(s) 37, 196, 357
BstDEI CTNAG 4 cut(s) 97, 107, 114, 255
BstENI CCTNNNNNAGG 1 cut(s) 106
BstF5I GGATG 2 cut(s) 66, 220
BstFNI CGCG 1 cut(s) 376
BstH2I RGCGCY 1 cut(s) 36
BstHHI GCGC 1 cut(s) 35
BstMAI GTCTC 3 cut(s) 152, 461, 512
BstMWI GCNNNNNNNGC 4 cut(s) 45, 272, 319, 368
BstSCI CCNGG 1 cut(s) 308
BstUI CGCG 1 cut(s) 376
BstV1I GCAGC 1 cut(s) 346
BstV2I GAAGAC 1 cut(s) 52
BstZ17I GTATAC 1 cut(s) 343
BsuRI GGCC 4 cut(s) 39, 51, 240, 338
BtsCI GGATG 2 cut(s) 66, 220
BtsIMutI CAGTG 1 cut(s) 216
Cac8I GCNNGC 3 cut(s) 37, 196, 357
CfoI GCGC 1 cut(s) 35
Cfr13I GGNCC 1 cut(s) 290
Csp6I GTAC 1 cut(s) 552
CviAII CATG 1 cut(s) 434
CviQI GTAC 1 cut(s) 552
DdeI CTNAG 4 cut(s) 97, 107, 114, 255
EaeI YGGCCR 1 cut(s) 336
Eam1104I CTCTTC 2 cut(s) 469, 510
EarI CTCTTC 2 cut(s) 469, 510
Eco31I GGTCTC 1 cut(s) 152
Eco47I GGWCC 1 cut(s) 290
Eco57I CTGAAG 1 cut(s) 534
EcoNI CCTNNNNNAGG 1 cut(s) 106
FaeI CATG 1 cut(s) 437
FalI AAGNNNNNCTT 2 cut(s) 146, 178
FaqI GGGAC 1 cut(s) 199
FatI CATG 1 cut(s) 433
FblI GTMKAC 2 cut(s) 342, 415
Fnu4HI GCNGC 2 cut(s) 49, 360
FokI GGATG 2 cut(s) 53, 227
Fsp4HI GCNGC 2 cut(s) 49, 360
FspBI CTAG 2 cut(s) 71, 75
GlaI GCGC 1 cut(s) 34
GluI GCNGC 2 cut(s) 49, 360
HaeII RGCGCY 1 cut(s) 36
HaeIII GGCC 4 cut(s) 39, 51, 240, 338
HapII CCGG 1 cut(s) 309
HhaI GCGC 1 cut(s) 35
Hin1II CATG 1 cut(s) 437
Hin6I GCGC 1 cut(s) 33
HinP1I GCGC 1 cut(s) 33
HinfI GANTC 2 cut(s) 78, 565
HpaII CCGG 1 cut(s) 309
HphI GGTGA 3 cut(s) 449, 509, 572
Hpy166II GTNNAC 2 cut(s) 343, 416
Hpy188I TCNGA 2 cut(s) 564, 570
Hpy188III TCNNGA 1 cut(s) 109
Hpy8I GTNNAC 2 cut(s) 343, 416
HpyAV CCTTC 4 cut(s) 148, 230, 542, 565
HpyCH4III ACNGT 4 cut(s) 148, 245, 294, 399
HpyCH4V TGCA 3 cut(s) 194, 535, 590
HpyF10VI GCNNNNNNNGC 4 cut(s) 45, 272, 319, 368
HpyF3I CTNAG 4 cut(s) 97, 107, 114, 255
Hsp92II CATG 1 cut(s) 437
HspAI GCGC 1 cut(s) 33
KpnI GGTACC 1 cut(s) 555
LmnI GCTCC 1 cut(s) 574
LpnPI CCDG 8 cut(s) 21, 94, 180, 261, 273, 322, 480, 520
Lsp1109I GCAGC 1 cut(s) 346
LweI GCATC 1 cut(s) 331
MaeI CTAG 2 cut(s) 71, 75
MaeIII GTNAC 2 cut(s) 142, 437
MboII GAAGA 3 cut(s) 52, 456, 527
MfeI CAATTG 1 cut(s) 138
MluCI AATT 3 cut(s) 138, 471, 524
MluI ACGCGT 1 cut(s) 374
MlyI GAGTC 2 cut(s) 72, 574
MseI TTAA 2 cut(s) 15, 387
MslI CAYNNNNRTG 1 cut(s) 350
MspI CCGG 1 cut(s) 309
MspR9I CCNGG 1 cut(s) 310
MunI CAATTG 1 cut(s) 138
MvnI CGCG 1 cut(s) 376
MwoI GCNNNNNNNGC 4 cut(s) 45, 272, 319, 368
NciI CCSGG 1 cut(s) 310
NlaIII CATG 1 cut(s) 437
NlaIV GGNNCC 2 cut(s) 553, 576
NmuCI GTSAC 1 cut(s) 437
PcsI WCGNNNNNNNCGW 2 cut(s) 326, 403
PkrI GCNGC 2 cut(s) 50, 361
PleI GAGTC 2 cut(s) 72, 573
PpsI GAGTC 2 cut(s) 72, 573
PspN4I GGNNCC 2 cut(s) 553, 576
PspPI GGNCC 1 cut(s) 290
RsaI GTAC 1 cut(s) 553
RsaNI GTAC 1 cut(s) 552
RseI CAYNNNNRTG 1 cut(s) 350
SaqAI TTAA 2 cut(s) 15, 387
SatI GCNGC 2 cut(s) 49, 360
Sau96I GGNCC 1 cut(s) 290
SchI GAGTC 2 cut(s) 72, 574
ScrFI CCNGG 1 cut(s) 310
SetI ASST 9 cut(s) 76, 96, 164, 256, 335, 421, 553, 557, 585
SfaNI GCATC 1 cut(s) 331
SinI GGWCC 1 cut(s) 290
SmiMI CAYNNNNRTG 1 cut(s) 350
SmlI CTYRAG 1 cut(s) 163
SmoI CTYRAG 1 cut(s) 163
Sse9I AATT 3 cut(s) 138, 471, 524
SsiI CCGC 1 cut(s) 48
SspMI CTAG 2 cut(s) 71, 75
StyD4I CCNGG 1 cut(s) 308
TaaI ACNGT 4 cut(s) 148, 245, 294, 399
TaqI TCGA 1 cut(s) 11
TasI AATT 3 cut(s) 138, 471, 524
TauI GCSGC 1 cut(s) 51
Tru1I TTAA 2 cut(s) 15, 387
Tru9I TTAA 2 cut(s) 15, 387
TscAI CASTG 1 cut(s) 216
TseFI GTSAC 1 cut(s) 437
TseI GCWGC 1 cut(s) 359
Tsp45I GTSAC 1 cut(s) 437
TspDTI ATGAA 2 cut(s) 147, 561
TspRI CASTG 1 cut(s) 216
VpaK11BI GGWCC 1 cut(s) 290
XagI CCTNNNNNAGG 1 cut(s) 106
XapI RAATTY 2 cut(s) 471, 524
XmiI GTMKAC 2 cut(s) 342, 415
XspI CTAG 2 cut(s) 71, 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.