Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0001014

Physical Location & Seq

Genomic Coordinates Forward (+)

32835400 .. 32860185

Gene Structure 24786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG308000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGTCGCCGGACTGCGACGTCTACACCTGCTGCGCCTGCCAGAATGGCGGCTCCAACGGTGATCAAGCTGAAGATCTGCTACGGCGGGTCGTGACTGCTTCTATTAAGGGTTTCACCATTGGCGCAGGCCTCAAAGGTGGCCTCGCCGTCTTCTCCATCCTAGCTAGACTCAGAAAGAGAAAGCTCTTAGCCTCTCTCAGGACTGAGGGTGCGATTATGAATAATGAAGCAATTGTTGTTGTTTTGAAGGAAACCTTGAGATATGGTCTGTTTCTTGGGACTTTTGCAGGCACATTTGTTTCAGTGGATGAGATTATTGCTTCTTTGGGAGGCCACCGTAGGCATTTCAGGACAGCTAAGTGGAGGGCTTTGTTAGCAGGGCTTATAGCAGGACCGTCTATGCTTCTTACCGGGCATAACACACAGCATACGAGCTTAGCTGTATACATACTTATGAGTGCTGCCATGTTGGCCACGCGTTGTGGGATTAAAAGCAAACGGTTTGGTCGTGTTTGTAGACCTCTCACTTGGAAGCACGGTGACATTTTCCTTATGTGTCTCTCCTCTTCGCAAATTCTGTATATTTCTGCTGAGCATGTTCCTGTAAAATATGGAGGTTTGAGTGTGGATTACTGTGAGTGCAACCCAGAATTCACCATTGCTGATCCAGTCACTAAAGTAACCATCAAACTTGGGACAAAGAAGACTCAGGAAATTATAATTTATGAGCATAAAAAGAAGAAAATAAGGAATCTTACTGTCATCAGATTATCTGCTTTATCAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TMEM135_C_rich

Protein Analysis

262

Amino Acids

28.64

Weight (kDa)

9.7

Isoelectric Point (pI)

32.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34630 AT1G34630 AT1G34630 AT1G34630 AT1G34630
fragaria_vesca	FvH4_5g37331 FvH4_5g37331
malus_domestica	MD08G1182800.v1.1
prunus_persica	Prupe.1G517000_v2.0.a1 Prupe.1G517000_v2.0.a1
pyrus_communis	pycom08g15660
rosa_chinensis	RchiOBHm_Chr3g0470741 RchiOBHm_Chr4g0408951 RchiOBHm_Chr7g0238981
rosa_laevigata	RLG00000000793 RLG00000007867 RLG00000014356 RLG00000015234 RLG00000016579 RLG00000020758
rosa_multiflora	Rmu_co8298683.1_g000001 Rmu_sc0002152.1_g000014 Rmu_sc0004132.1_g000004 Rmu_sc0004879.1_g000005 Rmu_sc0005866.1_g000014 Rmu_sc0010178.1_g000001 Rmu_sc0029797.1_g000001 Rmu_sc0032697.1_g000001 Rmu_sc0034117.1_g000001 Rmu_ssc0000233.1_g000066
rosa_roxburghii	Rroxscaffold_3G00221410 Rroxscaffold_3G00221420
rosa_rugosa	Rorug03G0157600 Rorug05G0148200 Rorug05G0232900 Rorug05G0238700 Rorug07G0324200.1
rosa_samantha	Rh1BG208000 Rh1DG234700 Rh2AG003700 Rh2AG216800 Rh2DG222500 Rh3AG161900 Rh3AG329400 Rh3BG186700 Rh3CG176900 Rh3DG308000 Rh4AG125400 Rh4AG152700 Rh4BG154900 Rh4CG133600 Rh4DG112900 Rh5AG299600 Rh7AG465300 Rh7AG479200 Rh7BG451800 Rh7CG251000 Rh7CG496300 Rh7DG343400 Rh7DG463900
rosa_wichuraiana	Rw7G040000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	719
AarI	CACCTGC	1 cut(s)	35
AasI	GACNNNNNNGTC	1 cut(s)	17
AatII	GACGTC	1 cut(s)	21
Acc36I	ACCTGC	1 cut(s)	35
AccI	GTMKAC	3 cut(s)	21, 444, 517
AccII	CGCG	1 cut(s)	478
AciI	CCGC	2 cut(s)	48, 85
AclWI	GGATC	1 cut(s)	659
AcoI	YGGCCR	1 cut(s)	471
AcsI	RAATTY	2 cut(s)	573, 650
AcuI	CTGAAG	1 cut(s)	90
AcyI	GRCGYC	1 cut(s)	18
AfiI	CCNNNNNNNGG	1 cut(s)	198
AflIII	ACRYGT	1 cut(s)	476
AgsI	TTSAA	1 cut(s)	247
AluBI	AGCT	7 cut(s)	68, 164, 184, 356, 435, 440, 786
AluI	AGCT	7 cut(s)	68, 164, 184, 356, 435, 440, 786
Alw26I	GTCTC	1 cut(s)	563
AlwI	GGATC	1 cut(s)	659
AoxI	GGCC	4 cut(s)	127, 139, 331, 471
ApeKI	GCWGC	2 cut(s)	30, 461
ApoI	RAATTY	2 cut(s)	573, 650
AspLEI	GCGC	2 cut(s)	35, 125
AspS9I	GGNCC	1 cut(s)	392
AsuC2I	CCSGG	1 cut(s)	412
AsuHPI	GGTGA	4 cut(s)	71, 106, 551, 646
AvaII	GGWCC	1 cut(s)	392
BalI	TGGCCA	1 cut(s)	473
BarI	GAAGNNNNNNTAC	2 cut(s)	63, 95
BbsI	GAAGAC	2 cut(s)	142, 710
BbvI	GCAGC	2 cut(s)	17, 448
BccI	CCATC	2 cut(s)	164, 692
BceAI	ACGGC	2 cut(s)	98, 131
BclI	TGATCA	1 cut(s)	61
BcnI	CCSGG	1 cut(s)	412
BcoDI	GTCTC	1 cut(s)	563
BfaI	CTAG	2 cut(s)	161, 165
BfuAI	ACCTGC	1 cut(s)	35
BglI	GCCNNNNNGGC	2 cut(s)	45, 470
BglII	AGATCT	1 cut(s)	73
BisI	GCNGC	3 cut(s)	31, 49, 462
BlpI	GCTNAGC	2 cut(s)	436, 591
BlsI	GCNGC	3 cut(s)	32, 50, 463
Bme1390I	CCNGG	1 cut(s)	412
Bme18I	GGWCC	1 cut(s)	392
BmgT120I	GGNCC	1 cut(s)	392
BmiI	GGNNCC	1 cut(s)	52
BmrFI	CCNGG	1 cut(s)	412
BpiI	GAAGAC	2 cut(s)	142, 710
Bpu1102I	GCTNAGC	2 cut(s)	436, 591
BpuEI	CTTGAG	1 cut(s)	277
BpuMI	CCSGG	1 cut(s)	412
BsaHI	GRCGYC	1 cut(s)	18
Bsc4I	CCNNNNNNNGG	1 cut(s)	198
Bse1I	ACTGG	1 cut(s)	668
Bse3DI	GCAATG	1 cut(s)	657
BseGI	GGATG	2 cut(s)	156, 313
BseLI	CCNNNNNNNGG	1 cut(s)	198
BseMI	GCAATG	1 cut(s)	657
BseMII	CTCAG	5 cut(s)	184, 195, 211, 582, 722
BseNI	ACTGG	1 cut(s)	668
BseRI	GAGGAG	1 cut(s)	553
BseXI	GCAGC	2 cut(s)	17, 448
Bsh1236I	CGCG	1 cut(s)	478
BshFI	GGCC	4 cut(s)	129, 141, 333, 473
BsiSI	CCGG	2 cut(s)	8, 411
BslFI	GGGAC	2 cut(s)	292, 709
BslI	CCNNNNNNNGG	1 cut(s)	198
BsmAI	GTCTC	1 cut(s)	563
BsmFI	GGGAC	2 cut(s)	292, 709
BsnI	GGCC	4 cut(s)	129, 141, 333, 473
Bsp143I	GATC	3 cut(s)	61, 73, 664
Bsp1720I	GCTNAGC	2 cut(s)	436, 591
BspACI	CCGC	2 cut(s)	48, 85
BspANI	GGCC	4 cut(s)	129, 141, 333, 473
BspCNI	CTCAG	5 cut(s)	183, 196, 210, 583, 721
BspFNI	CGCG	1 cut(s)	478
BspLI	GGNNCC	1 cut(s)	52
BspMI	ACCTGC	1 cut(s)	35
BspPI	GGATC	1 cut(s)	659
BsrDI	GCAATG	1 cut(s)	657
BsrI	ACTGG	1 cut(s)	668
BssMI	GATC	3 cut(s)	61, 73, 664
BssNAI	GTATAC	1 cut(s)	445
BssNI	GRCGYC	1 cut(s)	18
Bst1107I	GTATAC	1 cut(s)	445
Bst4CI	ACNGT	7 cut(s)	59, 338, 396, 501, 539, 635, 760
Bst6I	CTCTTC	1 cut(s)	571
BstACI	GRCGYC	1 cut(s)	18
BstC8I	GCNNGC	3 cut(s)	37, 127, 289
BstDEI	CTNAG	8 cut(s)	170, 187, 197, 204, 357, 436, 591, 708
BstENI	CCTNNNNNAGG	1 cut(s)	196
BstF5I	GGATG	2 cut(s)	156, 313
BstFNI	CGCG	1 cut(s)	478
BstHHI	GCGC	2 cut(s)	35, 125
BstKTI	GATC	3 cut(s)	64, 76, 667
BstMAI	GTCTC	1 cut(s)	563
BstMBI	GATC	3 cut(s)	61, 73, 664
BstMWI	GCNNNNNNNGC	4 cut(s)	36, 45, 374, 470
BstNSI	RCATGY	1 cut(s)	599
BstSCI	CCNGG	1 cut(s)	410
BstUI	CGCG	1 cut(s)	478
BstV1I	GCAGC	2 cut(s)	17, 448
BstV2I	GAAGAC	2 cut(s)	142, 710
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
BstZ17I	GTATAC	1 cut(s)	445
BsuRI	GGCC	4 cut(s)	129, 141, 333, 473
BtsCI	GGATG	2 cut(s)	156, 313
BtsIMutI	CAGTG	1 cut(s)	309
BveI	ACCTGC	1 cut(s)	35
Cac8I	GCNNGC	3 cut(s)	37, 127, 289
CfoI	GCGC	2 cut(s)	35, 125
Cfr13I	GGNCC	1 cut(s)	392
CviAII	CATG	2 cut(s)	466, 596
DdeI	CTNAG	8 cut(s)	170, 187, 197, 204, 357, 436, 591, 708
DpnI	GATC	3 cut(s)	63, 75, 666
DpnII	GATC	3 cut(s)	61, 73, 664
DrdI	GACNNNNNNGTC	1 cut(s)	17
DseDI	GACNNNNNNGTC	1 cut(s)	17
EaeI	YGGCCR	1 cut(s)	471
Eam1104I	CTCTTC	1 cut(s)	571
EarI	CTCTTC	1 cut(s)	571
Eco147I	AGGCCT	1 cut(s)	129
Eco47I	GGWCC	1 cut(s)	392
Eco57I	CTGAAG	1 cut(s)	90
EcoNI	CCTNNNNNAGG	1 cut(s)	196
EcoRI	GAATTC	1 cut(s)	650
FaeI	CATG	2 cut(s)	469, 599
FalI	AAGNNNNNCTT	2 cut(s)	239, 271
FaqI	GGGAC	2 cut(s)	292, 709
FatI	CATG	2 cut(s)	465, 595
FauI	CCCGC	1 cut(s)	78
FbaI	TGATCA	1 cut(s)	61
FblI	GTMKAC	3 cut(s)	21, 444, 517
Fnu4HI	GCNGC	3 cut(s)	31, 49, 462
FokI	GGATG	2 cut(s)	143, 320
Fsp4HI	GCNGC	3 cut(s)	31, 49, 462
FspBI	CTAG	2 cut(s)	161, 165
GlaI	GCGC	2 cut(s)	34, 124
GluI	GCNGC	3 cut(s)	31, 49, 462
HaeIII	GGCC	4 cut(s)	129, 141, 333, 473
HapII	CCGG	2 cut(s)	8, 411
HhaI	GCGC	2 cut(s)	35, 125
Hin1I	GRCGYC	1 cut(s)	18
Hin1II	CATG	2 cut(s)	469, 599
Hin6I	GCGC	2 cut(s)	33, 123
HinP1I	GCGC	2 cut(s)	33, 123
HinfI	GANTC	3 cut(s)	168, 706, 751
HpaII	CCGG	2 cut(s)	8, 411
HphI	GGTGA	4 cut(s)	71, 106, 551, 646
Hpy166II	GTNNAC	3 cut(s)	22, 445, 518
Hpy188I	TCNGA	2 cut(s)	173, 767
Hpy188III	TCNNGA	4 cut(s)	91, 199, 349, 710
Hpy8I	GTNNAC	3 cut(s)	22, 445, 518
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	1 cut(s)	241
HpyCH4III	ACNGT	7 cut(s)	59, 338, 396, 501, 539, 635, 760
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	2 cut(s)	287, 642
HpyF10VI	GCNNNNNNNGC	4 cut(s)	36, 45, 374, 470
HpyF3I	CTNAG	8 cut(s)	170, 187, 197, 204, 357, 436, 591, 708
HpySE526I	ACGT	1 cut(s)	18
Hsp92I	GRCGYC	1 cut(s)	18
Hsp92II	CATG	2 cut(s)	469, 599
HspAI	GCGC	2 cut(s)	33, 123
Ksp22I	TGATCA	1 cut(s)	61
Kzo9I	GATC	3 cut(s)	61, 73, 664
LmnI	GCTCC	1 cut(s)	56
Lsp1109I	GCAGC	2 cut(s)	17, 448
MaeI	CTAG	2 cut(s)	161, 165
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	4 cut(s)	91, 539, 670, 679
MalI	GATC	3 cut(s)	63, 75, 666
MboI	GATC	3 cut(s)	61, 73, 664
MboII	GAAGA	5 cut(s)	83, 142, 558, 715, 751
MfeI	CAATTG	1 cut(s)	231
MflI	RGATCY	1 cut(s)	73
MlsI	TGGCCA	1 cut(s)	473
MluCI	AATT	5 cut(s)	231, 573, 650, 714, 720
MluI	ACGCGT	1 cut(s)	476
MluNI	TGGCCA	1 cut(s)	473
MlyI	GAGTC	2 cut(s)	162, 700
MmeI	TCCRAC	1 cut(s)	78
MnlI	CCTC	9 cut(s)	140, 152, 199, 202, 323, 357, 531, 574, 608
Mox20I	TGGCCA	1 cut(s)	473
MscI	TGGCCA	1 cut(s)	473
MseI	TTAA	2 cut(s)	105, 489
MslI	CAYNNNNRTG	1 cut(s)	452
Msp20I	TGGCCA	1 cut(s)	473
MspI	CCGG	2 cut(s)	8, 411
MspR9I	CCNGG	1 cut(s)	412
MunI	CAATTG	1 cut(s)	231
MvnI	CGCG	1 cut(s)	478
MwoI	GCNNNNNNNGC	4 cut(s)	36, 45, 374, 470
NciI	CCSGG	1 cut(s)	412
NdeII	GATC	3 cut(s)	61, 73, 664
NlaIII	CATG	2 cut(s)	469, 599
NlaIV	GGNNCC	1 cut(s)	52
NmuCI	GTSAC	3 cut(s)	91, 539, 670
NspI	RCATGY	1 cut(s)	599
PaqCI	CACCTGC	1 cut(s)	35
PceI	AGGCCT	1 cut(s)	129
PcsI	WCGNNNNNNNCGW	1 cut(s)	505
PfeI	GAWTC	1 cut(s)	751
PkrI	GCNGC	3 cut(s)	32, 50, 463
PleI	GAGTC	2 cut(s)	162, 700
PpsI	GAGTC	2 cut(s)	162, 700
PsiI	TTATAA	1 cut(s)	719
PspN4I	GGNNCC	1 cut(s)	52
PspPI	GGNCC	1 cut(s)	392
PsuI	RGATCY	1 cut(s)	73
RseI	CAYNNNNRTG	1 cut(s)	452
SaqAI	TTAA	2 cut(s)	105, 489
SatI	GCNGC	3 cut(s)	31, 49, 462
Sau3AI	GATC	3 cut(s)	61, 73, 664
Sau96I	GGNCC	1 cut(s)	392
SchI	GAGTC	2 cut(s)	162, 700
ScrFI	CCNGG	1 cut(s)	412
SinI	GGWCC	1 cut(s)	392
SmiMI	CAYNNNNRTG	1 cut(s)	452
SmlI	CTYRAG	1 cut(s)	256
SmoI	CTYRAG	1 cut(s)	256
Sse9I	AATT	5 cut(s)	231, 573, 650, 714, 720
SseBI	AGGCCT	1 cut(s)	129
SsiI	CCGC	2 cut(s)	48, 85
SspMI	CTAG	2 cut(s)	161, 165
StuI	AGGCCT	1 cut(s)	129
StyD4I	CCNGG	1 cut(s)	410
TaaI	ACNGT	7 cut(s)	59, 338, 396, 501, 539, 635, 760
TaiI	ACGT	1 cut(s)	21
TasI	AATT	5 cut(s)	231, 573, 650, 714, 720
TauI	GCSGC	1 cut(s)	51
TfiI	GAWTC	1 cut(s)	751
Tru1I	TTAA	2 cut(s)	105, 489
Tru9I	TTAA	2 cut(s)	105, 489
TscAI	CASTG	1 cut(s)	309
TseFI	GTSAC	3 cut(s)	91, 539, 670
TseI	GCWGC	2 cut(s)	30, 461
Tsp45I	GTSAC	3 cut(s)	91, 539, 670
TspDTI	ATGAA	2 cut(s)	233, 240
TspRI	CASTG	1 cut(s)	309
VpaK11BI	GGWCC	1 cut(s)	392
XagI	CCTNNNNNAGG	1 cut(s)	196
XapI	RAATTY	2 cut(s)	573, 650
XceI	RCATGY	1 cut(s)	599
XmiI	GTMKAC	3 cut(s)	21, 444, 517
XspI	CTAG	2 cut(s)	161, 165
ZraI	GACGTC	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.