Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001014

Physical Location & Seq

Genomic Coordinates Forward (+)

26386986 .. 26390568

Gene Structure 3583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG133600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGTTGCCGGACGGCGACGTCTACACCTGCTGCGCCGGTGAGAATGGAGCCTCCAACGGTGATCAAGCCGAAGATCTGGTGTGCGTGCATTACAGGAAATCTGATCCCTCTCAGTCATCGTTTTGCTATTCCTCTTCACTCAAATACGTTCCTGTGCCGTCGAGCGATTCCGAGAAGCTACGGCGGGTCGTGACTGCTTCAATTAAGGGTTTTACCATTGGCGCCGGCCTCATAGGCGGCCTTGCCGTCTTCTCCATCCTAGCTAGACTCAAAAAGAGAAAGCTCTTAGCCTCTCTCAGGACTGAGGGTGCGATTACGAATAATGAATCAATTGTTACTGTTTTGAAGGAGACCTTGAGATATGGTCTGTTTCTTGGGACTTTTGCAGGCACATTTGTTTCAGTGGATGAGATTATTGCTTCTTTGGGAGGCCACTGTAGGACAACTAAGTGGAGGGCTTTGTTAGCAGGGCTTATAGCAGGACCGTCTATGCTTCTTACCGGGCATAACACGCAGCATACGAGTTTGGCCGTATACATACTTATGCGTGCTGCCGTGTTGGCCACGCGTTGTGGGATTAAAAGCAAACGGTTTGGTCGTGTTTGTAGACCTCTCACTTGGAAGCACGTTGACATTTTCCTTATGTGTCTCTCCTCTTCGCAAATTCTGTCTGCTTACATATTGAAGCAGGAGAGTTTGCCTCCATCATATAAATTCTTTCTCAACAAACATGGGGGAAAAGATATCACAATTTTGCAAGGTGTTAAAGAGATTCCAAGTGGTTTACCGTTTACTAATTTGGAAGCAATAGAAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TMEM135_C_rich

Protein Analysis

272

Amino Acids

29.54

Weight (kDa)

9.42

Isoelectric Point (pI)

38.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34630 AT1G34630 AT1G34630 AT1G34630 AT1G34630
fragaria_vesca	FvH4_5g37331 FvH4_5g37331
malus_domestica	MD08G1182800.v1.1
prunus_persica	Prupe.1G517000_v2.0.a1 Prupe.1G517000_v2.0.a1
pyrus_communis	pycom08g15660
rosa_chinensis	RchiOBHm_Chr3g0470741 RchiOBHm_Chr4g0408951 RchiOBHm_Chr7g0238981
rosa_laevigata	RLG00000000793 RLG00000007867 RLG00000014356 RLG00000015234 RLG00000016579 RLG00000020758
rosa_multiflora	Rmu_co8298683.1_g000001 Rmu_sc0002152.1_g000014 Rmu_sc0004132.1_g000004 Rmu_sc0004879.1_g000005 Rmu_sc0005866.1_g000014 Rmu_sc0010178.1_g000001 Rmu_sc0029797.1_g000001 Rmu_sc0032697.1_g000001 Rmu_sc0034117.1_g000001 Rmu_ssc0000233.1_g000066
rosa_roxburghii	Rroxscaffold_3G00221410 Rroxscaffold_3G00221420
rosa_rugosa	Rorug03G0157600 Rorug05G0148200 Rorug05G0232900 Rorug05G0238700 Rorug07G0324200.1
rosa_samantha	Rh1BG208000 Rh1DG234700 Rh2AG003700 Rh2AG216800 Rh2DG222500 Rh3AG161900 Rh3AG329400 Rh3BG186700 Rh3CG176900 Rh3DG308000 Rh4AG125400 Rh4AG152700 Rh4BG154900 Rh4CG133600 Rh4DG112900 Rh5AG299600 Rh7AG465300 Rh7AG479200 Rh7BG451800 Rh7CG251000 Rh7CG496300 Rh7DG343400 Rh7DG463900
rosa_wichuraiana	Rw7G040000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	35
AasI	GACNNNNNNGTC	1 cut(s)	17
AatII	GACGTC	1 cut(s)	21
Acc36I	ACCTGC	1 cut(s)	35
AccB1I	GGYRCC	1 cut(s)	221
AccI	GTMKAC	3 cut(s)	21, 534, 607
AccII	CGCG	1 cut(s)	568
AciI	CCGC	2 cut(s)	184, 237
AclWI	GGATC	1 cut(s)	98
AcoI	YGGCCR	2 cut(s)	528, 561
AcsI	RAATTY	2 cut(s)	663, 713
AcyI	GRCGYC	2 cut(s)	18, 222
AfiI	CCNNNNNNNGG	1 cut(s)	297
AflIII	ACRYGT	1 cut(s)	566
AgsI	TTSAA	3 cut(s)	201, 346, 685
AluBI	AGCT	3 cut(s)	178, 263, 283
AluI	AGCT	3 cut(s)	178, 263, 283
Alw26I	GTCTC	2 cut(s)	344, 653
AlwI	GGATC	1 cut(s)	98
AoxI	GGCC	5 cut(s)	226, 238, 430, 528, 561
ApeKI	GCWGC	3 cut(s)	30, 514, 551
ApoI	RAATTY	2 cut(s)	663, 713
AspLEI	GCGC	2 cut(s)	35, 224
AspS9I	GGNCC	1 cut(s)	482
AsuC2I	CCSGG	1 cut(s)	502
AsuHPI	GGTGA	2 cut(s)	50, 71
AvaII	GGWCC	1 cut(s)	482
BalI	TGGCCA	1 cut(s)	563
BanI	GGYRCC	1 cut(s)	221
BbsI	GAAGAC	1 cut(s)	241
BbvI	GCAGC	3 cut(s)	17, 526, 538
BccI	CCATC	2 cut(s)	263, 712
BceAI	ACGGC	6 cut(s)	28, 142, 197, 230, 515, 539
BclI	TGATCA	1 cut(s)	61
BcnI	CCSGG	1 cut(s)	502
BcoDI	GTCTC	2 cut(s)	344, 653
BfaI	CTAG	2 cut(s)	260, 264
BfmI	CTRYAG	1 cut(s)	436
BfoI	RGCGCY	1 cut(s)	225
BfuAI	ACCTGC	1 cut(s)	35
BglI	GCCNNNNNGGC	2 cut(s)	234, 560
BglII	AGATCT	1 cut(s)	73
BisI	GCNGC	4 cut(s)	31, 238, 515, 552
BlsI	GCNGC	4 cut(s)	32, 239, 516, 553
Bme1390I	CCNGG	1 cut(s)	502
Bme18I	GGWCC	1 cut(s)	482
BmgT120I	GGNCC	1 cut(s)	482
BmiI	GGNNCC	2 cut(s)	49, 223
BmrFI	CCNGG	1 cut(s)	502
BpiI	GAAGAC	1 cut(s)	241
BplI	GAGNNNNNCTC	2 cut(s)	685, 717
BpuEI	CTTGAG	1 cut(s)	376
BpuMI	CCSGG	1 cut(s)	502
BsaHI	GRCGYC	2 cut(s)	18, 222
BsaI	GGTCTC	1 cut(s)	344
Bsc4I	CCNNNNNNNGG	1 cut(s)	297
Bse118I	RCCGGY	2 cut(s)	35, 224
BseGI	GGATG	2 cut(s)	255, 412
BseLI	CCNNNNNNNGG	1 cut(s)	297
BseMII	CTCAG	3 cut(s)	125, 294, 310
BseRI	GAGGAG	1 cut(s)	643
BseXI	GCAGC	3 cut(s)	17, 526, 538
Bsh1236I	CGCG	1 cut(s)	568
BshFI	GGCC	5 cut(s)	228, 240, 432, 530, 563
BshNI	GGYRCC	1 cut(s)	221
BsiSI	CCGG	4 cut(s)	8, 36, 225, 501
BslFI	GGGAC	1 cut(s)	391
BslI	CCNNNNNNNGG	1 cut(s)	297
BsmAI	GTCTC	2 cut(s)	344, 653
BsmFI	GGGAC	1 cut(s)	391
BsnI	GGCC	5 cut(s)	228, 240, 432, 530, 563
Bso31I	GGTCTC	1 cut(s)	344
Bsp143I	GATC	3 cut(s)	61, 73, 103
BspACI	CCGC	2 cut(s)	184, 237
BspANI	GGCC	5 cut(s)	228, 240, 432, 530, 563
BspCNI	CTCAG	3 cut(s)	124, 295, 309
BspFNI	CGCG	1 cut(s)	568
BspLI	GGNNCC	2 cut(s)	49, 223
BspMI	ACCTGC	1 cut(s)	35
BspPI	GGATC	1 cut(s)	98
BspT107I	GGYRCC	1 cut(s)	221
BspTNI	GGTCTC	1 cut(s)	344
BsrFI	RCCGGY	2 cut(s)	35, 224
BssAI	RCCGGY	2 cut(s)	35, 224
BssMI	GATC	3 cut(s)	61, 73, 103
BssNAI	GTATAC	1 cut(s)	535
BssNI	GRCGYC	2 cut(s)	18, 222
Bst1107I	GTATAC	1 cut(s)	535
Bst4CI	ACNGT	6 cut(s)	59, 340, 437, 486, 591, 789
Bst6I	CTCTTC	2 cut(s)	139, 661
BstACI	GRCGYC	2 cut(s)	18, 222
BstC8I	GCNNGC	4 cut(s)	86, 226, 388, 549
BstDEI	CTNAG	5 cut(s)	111, 286, 296, 303, 447
BstENI	CCTNNNNNAGG	1 cut(s)	295
BstF5I	GGATG	2 cut(s)	255, 412
BstFNI	CGCG	1 cut(s)	568
BstH2I	RGCGCY	1 cut(s)	225
BstHHI	GCGC	2 cut(s)	35, 224
BstKTI	GATC	3 cut(s)	64, 76, 106
BstMAI	GTCTC	2 cut(s)	344, 653
BstMBI	GATC	3 cut(s)	61, 73, 103
BstMWI	GCNNNNNNNGC	4 cut(s)	234, 464, 511, 560
BstSCI	CCNGG	1 cut(s)	500
BstSFI	CTRYAG	1 cut(s)	436
BstUI	CGCG	1 cut(s)	568
BstV1I	GCAGC	3 cut(s)	17, 526, 538
BstV2I	GAAGAC	1 cut(s)	241
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
BstZ17I	GTATAC	1 cut(s)	535
BsuRI	GGCC	5 cut(s)	228, 240, 432, 530, 563
BtsCI	GGATG	2 cut(s)	255, 412
BtsIMutI	CAGTG	2 cut(s)	408, 433
BveI	ACCTGC	1 cut(s)	35
Cac8I	GCNNGC	4 cut(s)	86, 226, 388, 549
CfoI	GCGC	2 cut(s)	35, 224
Cfr10I	RCCGGY	2 cut(s)	35, 224
Cfr13I	GGNCC	1 cut(s)	482
CviAII	CATG	1 cut(s)	731
DdeI	CTNAG	5 cut(s)	111, 286, 296, 303, 447
DinI	GGCGCC	1 cut(s)	223
DpnI	GATC	3 cut(s)	63, 75, 105
DpnII	GATC	3 cut(s)	61, 73, 103
DrdI	GACNNNNNNGTC	1 cut(s)	17
DseDI	GACNNNNNNGTC	1 cut(s)	17
EaeI	YGGCCR	2 cut(s)	528, 561
Eam1104I	CTCTTC	2 cut(s)	139, 661
EarI	CTCTTC	2 cut(s)	139, 661
Eco31I	GGTCTC	1 cut(s)	344
Eco32I	GATATC	1 cut(s)	745
Eco47I	GGWCC	1 cut(s)	482
EcoNI	CCTNNNNNAGG	1 cut(s)	295
EcoRV	GATATC	1 cut(s)	745
EgeI	GGCGCC	1 cut(s)	223
EheI	GGCGCC	1 cut(s)	223
FaeI	CATG	1 cut(s)	734
FalI	AAGNNNNNCTT	2 cut(s)	338, 370
FaqI	GGGAC	1 cut(s)	391
FatI	CATG	1 cut(s)	730
FauI	CCCGC	1 cut(s)	177
FbaI	TGATCA	1 cut(s)	61
FblI	GTMKAC	3 cut(s)	21, 534, 607
Fnu4HI	GCNGC	4 cut(s)	31, 238, 515, 552
FokI	GGATG	2 cut(s)	242, 419
Fsp4HI	GCNGC	4 cut(s)	31, 238, 515, 552
FspBI	CTAG	2 cut(s)	260, 264
GlaI	GCGC	2 cut(s)	34, 223
GluI	GCNGC	4 cut(s)	31, 238, 515, 552
HaeII	RGCGCY	1 cut(s)	225
HaeIII	GGCC	5 cut(s)	228, 240, 432, 530, 563
HapII	CCGG	4 cut(s)	8, 36, 225, 501
HhaI	GCGC	2 cut(s)	35, 224
Hin1I	GRCGYC	2 cut(s)	18, 222
Hin1II	CATG	1 cut(s)	734
Hin6I	GCGC	2 cut(s)	33, 222
HinP1I	GCGC	2 cut(s)	33, 222
HincII	GTYRAC	1 cut(s)	631
HindII	GTYRAC	1 cut(s)	631
HinfI	GANTC	4 cut(s)	167, 267, 326, 772
HpaII	CCGG	4 cut(s)	8, 36, 225, 501
HphI	GGTGA	2 cut(s)	50, 71
Hpy166II	GTNNAC	6 cut(s)	22, 535, 608, 631, 785, 792
Hpy188I	TCNGA	2 cut(s)	103, 172
Hpy188III	TCNNGA	2 cut(s)	190, 298
Hpy8I	GTNNAC	6 cut(s)	22, 535, 608, 631, 785, 792
Hpy99I	CGWCG	2 cut(s)	20, 163
HpyAV	CCTTC	1 cut(s)	340
HpyCH4III	ACNGT	6 cut(s)	59, 340, 437, 486, 591, 789
HpyCH4IV	ACGT	3 cut(s)	18, 147, 627
HpyCH4V	TGCA	3 cut(s)	88, 386, 757
HpyF10VI	GCNNNNNNNGC	4 cut(s)	234, 464, 511, 560
HpyF3I	CTNAG	5 cut(s)	111, 286, 296, 303, 447
HpySE526I	ACGT	3 cut(s)	18, 147, 627
Hsp92I	GRCGYC	2 cut(s)	18, 222
Hsp92II	CATG	1 cut(s)	734
HspAI	GCGC	2 cut(s)	33, 222
KasI	GGCGCC	1 cut(s)	221
KroI	GCCGGC	1 cut(s)	224
KroNI	GCCGGC	1 cut(s)	226
Ksp22I	TGATCA	1 cut(s)	61
Kzo9I	GATC	3 cut(s)	61, 73, 103
LmnI	GCTCC	1 cut(s)	47
Lsp1109I	GCAGC	3 cut(s)	17, 526, 538
MaeI	CTAG	2 cut(s)	260, 264
MaeII	ACGT	3 cut(s)	18, 147, 627
MaeIII	GTNAC	2 cut(s)	190, 334
MalI	GATC	3 cut(s)	63, 75, 105
MboI	GATC	3 cut(s)	61, 73, 103
MboII	GAAGA	4 cut(s)	83, 126, 241, 648
MfeI	CAATTG	1 cut(s)	330
MflI	RGATCY	1 cut(s)	73
MlsI	TGGCCA	1 cut(s)	563
MluCI	AATT	6 cut(s)	201, 330, 663, 713, 750, 796
MluI	ACGCGT	1 cut(s)	566
MluNI	TGGCCA	1 cut(s)	563
Mly113I	GGCGCC	1 cut(s)	222
MlyI	GAGTC	1 cut(s)	261
MmeI	TCCRAC	1 cut(s)	78
Mox20I	TGGCCA	1 cut(s)	563
MroNI	GCCGGC	1 cut(s)	224
MscI	TGGCCA	1 cut(s)	563
MseI	TTAA	3 cut(s)	204, 579, 765
MslI	CAYNNNNRTG	1 cut(s)	542
Msp20I	TGGCCA	1 cut(s)	563
MspI	CCGG	4 cut(s)	8, 36, 225, 501
MspR9I	CCNGG	1 cut(s)	502
MunI	CAATTG	1 cut(s)	330
MvnI	CGCG	1 cut(s)	568
MwoI	GCNNNNNNNGC	4 cut(s)	234, 464, 511, 560
NaeI	GCCGGC	1 cut(s)	226
NarI	GGCGCC	1 cut(s)	222
NciI	CCSGG	1 cut(s)	502
NdeII	GATC	3 cut(s)	61, 73, 103
NgoMIV	GCCGGC	1 cut(s)	224
NlaIII	CATG	1 cut(s)	734
NlaIV	GGNNCC	2 cut(s)	49, 223
NmuCI	GTSAC	1 cut(s)	190
PaqCI	CACCTGC	1 cut(s)	35
PcsI	WCGNNNNNNNCGW	2 cut(s)	518, 595
PdiI	GCCGGC	1 cut(s)	226
PfeI	GAWTC	3 cut(s)	167, 326, 772
PkrI	GCNGC	4 cut(s)	32, 239, 516, 553
PleI	GAGTC	1 cut(s)	261
PluTI	GGCGCC	1 cut(s)	225
PpsI	GAGTC	1 cut(s)	261
PspN4I	GGNNCC	2 cut(s)	49, 223
PspPI	GGNCC	1 cut(s)	482
PsuI	RGATCY	1 cut(s)	73
RseI	CAYNNNNRTG	1 cut(s)	542
SaqAI	TTAA	3 cut(s)	204, 579, 765
SatI	GCNGC	4 cut(s)	31, 238, 515, 552
Sau3AI	GATC	3 cut(s)	61, 73, 103
Sau96I	GGNCC	1 cut(s)	482
SchI	GAGTC	1 cut(s)	261
ScrFI	CCNGG	1 cut(s)	502
SfcI	CTRYAG	1 cut(s)	436
SfoI	GGCGCC	1 cut(s)	223
SgrAI	CRCCGGYG	1 cut(s)	35
SinI	GGWCC	1 cut(s)	482
SmiMI	CAYNNNNRTG	1 cut(s)	542
SmlI	CTYRAG	1 cut(s)	355
SmoI	CTYRAG	1 cut(s)	355
Sse9I	AATT	6 cut(s)	201, 330, 663, 713, 750, 796
SsiI	CCGC	2 cut(s)	184, 237
SspDI	GGCGCC	1 cut(s)	221
SspMI	CTAG	2 cut(s)	260, 264
StyD4I	CCNGG	1 cut(s)	500
TaaI	ACNGT	6 cut(s)	59, 340, 437, 486, 591, 789
TaiI	ACGT	3 cut(s)	21, 150, 630
TaqI	TCGA	1 cut(s)	161
TasI	AATT	6 cut(s)	201, 330, 663, 713, 750, 796
TauI	GCSGC	1 cut(s)	240
TfiI	GAWTC	3 cut(s)	167, 326, 772
Tru1I	TTAA	3 cut(s)	204, 579, 765
Tru9I	TTAA	3 cut(s)	204, 579, 765
TscAI	CASTG	2 cut(s)	408, 440
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	3 cut(s)	30, 514, 551
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	1 cut(s)	339
TspRI	CASTG	2 cut(s)	408, 440
VpaK11BI	GGWCC	1 cut(s)	482
XagI	CCTNNNNNAGG	1 cut(s)	295
XapI	RAATTY	2 cut(s)	663, 713
XmiI	GTMKAC	3 cut(s)	21, 534, 607
XspI	CTAG	2 cut(s)	260, 264
ZraI	GACGTC	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.