Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029797.1

Orthogroup ID

OG0001014

Physical Location & Seq

Genomic Coordinates Reverse (-)

588 .. 2697

Gene Structure 2110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029797.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

atgaaagttccctgcacgattgtacacggaggtcagtcatgtagcaggcatattatctctttcctaattcaagcctacaaaagagcattaccggtttatcttccagtatatctgattccagcgcttatagttcatcggcaagacctcttgaaaaggcattacactatactactaaagggtcttcttggcactgcaagatcaagcttgtttctttccgcatattgcacatctgcctggatgtggacatgcttgctttttaggattttcaagatgtgtaatgtaccaatggtagcaatggggacgttcccgactggcctggccttggctattgagaagaaaagcaggcgtattgagatatcactctactgtctcgctcgagcgattgagagctttttcacctgcatggctgatactggatacttgccacaaacaaaaaaattgaagagagctgacgtggtgatctttagcttatcaaccgccatcataatgcattgctatgcagaggagagggaagtgttcagatccaagtacttgaatgttcttgactgggtttttggcgtcccacctcctccttgtgaaaccccccgctgcaaaaagagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TMEM135_C_rich

Protein Analysis

200

Amino Acids

22.78

Weight (kDa)

9.58

Isoelectric Point (pI)

64.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34630 AT1G34630 AT1G34630 AT1G34630 AT1G34630
fragaria_vesca	FvH4_5g37331 FvH4_5g37331
malus_domestica	MD08G1182800.v1.1
prunus_persica	Prupe.1G517000_v2.0.a1 Prupe.1G517000_v2.0.a1
pyrus_communis	pycom08g15660
rosa_chinensis	RchiOBHm_Chr3g0470741 RchiOBHm_Chr4g0408951 RchiOBHm_Chr7g0238981
rosa_laevigata	RLG00000000793 RLG00000007867 RLG00000014356 RLG00000015234 RLG00000016579 RLG00000020758
rosa_multiflora	Rmu_co8298683.1_g000001 Rmu_sc0002152.1_g000014 Rmu_sc0004132.1_g000004 Rmu_sc0004879.1_g000005 Rmu_sc0005866.1_g000014 Rmu_sc0010178.1_g000001 Rmu_sc0029797.1_g000001 Rmu_sc0032697.1_g000001 Rmu_sc0034117.1_g000001 Rmu_ssc0000233.1_g000066
rosa_roxburghii	Rroxscaffold_3G00221410 Rroxscaffold_3G00221420
rosa_rugosa	Rorug03G0157600 Rorug05G0148200 Rorug05G0232900 Rorug05G0238700 Rorug07G0324200.1
rosa_samantha	Rh1BG208000 Rh1DG234700 Rh2AG003700 Rh2AG216800 Rh2DG222500 Rh3AG161900 Rh3AG329400 Rh3BG186700 Rh3CG176900 Rh3DG308000 Rh4AG125400 Rh4AG152700 Rh4BG154900 Rh4CG133600 Rh4DG112900 Rh5AG299600 Rh7AG465300 Rh7AG479200 Rh7BG451800 Rh7CG251000 Rh7CG496300 Rh7DG343400 Rh7DG463900
rosa_wichuraiana	Rw7G040000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	407
Acc36I	ACCTGC	1 cut(s)	407
AciI	CCGC	3 cut(s)	216, 477, 586
AclWI	GGATC	1 cut(s)	516
AcyI	GRCGYC	1 cut(s)	558
AfaI	GTAC	3 cut(s)	24, 282, 530
AfeI	AGCGCT	1 cut(s)	123
AfiI	CCNNNNNNNGG	2 cut(s)	240, 322
AgeI	ACCGGT	1 cut(s)	91
AgsI	TTSAA	5 cut(s)	71, 151, 268, 442, 535
AjiI	CACGTC	1 cut(s)	454
AjnI	CCWGG	2 cut(s)	233, 315
AluBI	AGCT	4 cut(s)	204, 390, 449, 468
AluI	AGCT	4 cut(s)	204, 390, 449, 468
Alw26I	GTCTC	1 cut(s)	374
AlwI	GGATC	1 cut(s)	516
Ama87I	CYCGRG	1 cut(s)	375
Aor51HI	AGCGCT	1 cut(s)	123
AoxI	GGCC	2 cut(s)	313, 318
ApeKI	GCWGC	1 cut(s)	588
ArsI	GACNNNNNNTTYG	2 cut(s)	536, 568
AsiGI	ACCGGT	1 cut(s)	91
AspLEI	GCGC	1 cut(s)	124
AsuHPI	GGTGA	2 cut(s)	388, 469
AvaI	CYCGRG	1 cut(s)	375
BbsI	GAAGAC	1 cut(s)	173
BbvI	GCAGC	1 cut(s)	575
BccI	CCATC	1 cut(s)	488
BciT130I	CCWGG	2 cut(s)	235, 317
BciVI	GTATCC	1 cut(s)	410
BcoDI	GTCTC	1 cut(s)	374
BfoI	RGCGCY	1 cut(s)	125
BfuAI	ACCTGC	1 cut(s)	407
BfuI	GTATCC	1 cut(s)	410
BisI	GCNGC	1 cut(s)	589
BlsI	GCNGC	1 cut(s)	590
BmcAI	AGTACT	1 cut(s)	530
Bme1390I	CCNGG	2 cut(s)	235, 317
BmeT110I	CYCGRG	1 cut(s)	375
BmgBI	CACGTC	1 cut(s)	454
BmrFI	CCNGG	2 cut(s)	235, 317
BmrI	ACTGGG	1 cut(s)	556
BmuI	ACTGGG	1 cut(s)	556
BpiI	GAAGAC	1 cut(s)	173
BsaHI	GRCGYC	1 cut(s)	558
BsaJI	CCNNGG	1 cut(s)	321
BsaWI	WCCGGW	1 cut(s)	91
Bsc4I	CCNNNNNNNGG	2 cut(s)	240, 322
Bse118I	RCCGGY	1 cut(s)	91
Bse1I	ACTGG	4 cut(s)	104, 316, 418, 551
Bse3DI	GCAATG	2 cut(s)	300, 490
BseBI	CCWGG	2 cut(s)	235, 317
BseDI	CCNNGG	1 cut(s)	321
BseGI	GGATG	1 cut(s)	243
BseLI	CCNNNNNNNGG	2 cut(s)	240, 322
BseMI	GCAATG	2 cut(s)	300, 490
BseNI	ACTGG	4 cut(s)	104, 316, 418, 551
BseRI	GAGGAG	2 cut(s)	518, 558
BseXI	GCAGC	1 cut(s)	575
BshFI	GGCC	2 cut(s)	315, 320
BshTI	ACCGGT	1 cut(s)	91
BsiHKCI	CYCGRG	1 cut(s)	375
BsiSI	CCGG	1 cut(s)	92
BslFI	GGGAC	2 cut(s)	313, 545
BslI	CCNNNNNNNGG	2 cut(s)	240, 322
BsmAI	GTCTC	1 cut(s)	374
BsmFI	GGGAC	2 cut(s)	313, 545
BsnI	GGCC	2 cut(s)	315, 320
BsoBI	CYCGRG	1 cut(s)	375
Bsp1407I	TGTACA	1 cut(s)	22
Bsp143I	GATC	3 cut(s)	197, 459, 521
BspACI	CCGC	3 cut(s)	216, 477, 586
BspANI	GGCC	2 cut(s)	315, 320
BspMI	ACCTGC	1 cut(s)	407
BspPI	GGATC	1 cut(s)	516
BsrDI	GCAATG	2 cut(s)	300, 490
BsrFI	RCCGGY	1 cut(s)	91
BsrGI	TGTACA	1 cut(s)	22
BsrI	ACTGG	4 cut(s)	104, 316, 418, 551
BssAI	RCCGGY	1 cut(s)	91
BssECI	CCNNGG	1 cut(s)	321
BssMI	GATC	3 cut(s)	197, 459, 521
BssNI	GRCGYC	1 cut(s)	558
BssT1I	CCWWGG	1 cut(s)	321
Bst2UI	CCWGG	2 cut(s)	235, 317
Bst4CI	ACNGT	1 cut(s)	368
Bst6I	CTCTTC	1 cut(s)	437
BstACI	GRCGYC	1 cut(s)	558
BstAUI	TGTACA	1 cut(s)	22
BstC8I	GCNNGC	3 cut(s)	47, 251, 344
BstF5I	GGATG	1 cut(s)	243
BstH2I	RGCGCY	1 cut(s)	125
BstHHI	GCGC	1 cut(s)	124
BstKTI	GATC	3 cut(s)	200, 462, 524
BstMAI	GTCTC	1 cut(s)	374
BstMBI	GATC	3 cut(s)	197, 459, 521
BstNI	CCWGG	2 cut(s)	235, 317
BstNSI	RCATGY	1 cut(s)	249
BstSCI	CCNGG	2 cut(s)	233, 315
BstV1I	GCAGC	1 cut(s)	575
BstV2I	GAAGAC	1 cut(s)	173
BstX2I	RGATCY	1 cut(s)	521
BstYI	RGATCY	1 cut(s)	521
BsuI	GTATCC	1 cut(s)	410
BsuRI	GGCC	2 cut(s)	315, 320
BtrI	CACGTC	1 cut(s)	454
BtsCI	GGATG	1 cut(s)	243
BtsI	GCAGTG	1 cut(s)	189
BtsIMutI	CAGTG	1 cut(s)	189
BveI	ACCTGC	1 cut(s)	407
Cac8I	GCNNGC	3 cut(s)	47, 251, 344
CfoI	GCGC	1 cut(s)	124
Cfr10I	RCCGGY	1 cut(s)	91
CseI	GACGC	1 cut(s)	547
Csp6I	GTAC	3 cut(s)	23, 281, 529
CspAI	ACCGGT	1 cut(s)	91
CviAII	CATG	3 cut(s)	39, 246, 403
CviJI	RGCY	9 cut(s)	74, 204, 315, 320, 326, 390, 407, 449, 468
CviKI_1	RGCY	9 cut(s)	74, 204, 315, 320, 326, 390, 407, 449, 468
CviQI	GTAC	3 cut(s)	23, 281, 529
DpnI	GATC	3 cut(s)	199, 461, 523
DpnII	GATC	3 cut(s)	197, 459, 521
Eam1104I	CTCTTC	1 cut(s)	437
EarI	CTCTTC	1 cut(s)	437
Eco130I	CCWWGG	1 cut(s)	321
Eco32I	GATATC	1 cut(s)	357
Eco47III	AGCGCT	1 cut(s)	123
Eco88I	CYCGRG	1 cut(s)	375
EcoRII	CCWGG	2 cut(s)	233, 315
EcoRV	GATATC	1 cut(s)	357
EcoT14I	CCWWGG	1 cut(s)	321
EcoT22I	ATGCAT	1 cut(s)	492
ErhI	CCWWGG	1 cut(s)	321
FaeI	CATG	3 cut(s)	42, 249, 406
FaqI	GGGAC	2 cut(s)	313, 545
FatI	CATG	3 cut(s)	38, 245, 402
FauI	CCCGC	1 cut(s)	593
Fnu4HI	GCNGC	1 cut(s)	589
FokI	GGATG	1 cut(s)	250
Fsp4HI	GCNGC	1 cut(s)	589
GlaI	GCGC	1 cut(s)	123
GluI	GCNGC	1 cut(s)	589
HaeII	RGCGCY	1 cut(s)	125
HaeIII	GGCC	2 cut(s)	315, 320
HapII	CCGG	1 cut(s)	92
HgaI	GACGC	1 cut(s)	547
HhaI	GCGC	1 cut(s)	124
Hin1I	GRCGYC	1 cut(s)	558
Hin1II	CATG	3 cut(s)	42, 249, 406
Hin6I	GCGC	1 cut(s)	122
HinP1I	GCGC	1 cut(s)	122
HindIII	AAGCTT	1 cut(s)	202
HinfI	GANTC	1 cut(s)	115
HpaII	CCGG	1 cut(s)	92
HphI	GGTGA	2 cut(s)	388, 469
Hpy166II	GTNNAC	2 cut(s)	25, 243
Hpy188I	TCNGA	2 cut(s)	114, 521
Hpy188III	TCNNGA	4 cut(s)	148, 268, 307, 542
Hpy8I	GTNNAC	2 cut(s)	25, 243
HpyCH4III	ACNGT	1 cut(s)	368
HpyCH4IV	ACGT	2 cut(s)	302, 453
HpyCH4V	TGCA	7 cut(s)	15, 194, 225, 402, 490, 500, 591
HpySE526I	ACGT	2 cut(s)	302, 453
Hsp92I	GRCGYC	1 cut(s)	558
Hsp92II	CATG	3 cut(s)	42, 249, 406
HspAI	GCGC	1 cut(s)	122
Kzo9I	GATC	3 cut(s)	197, 459, 521
Lsp1109I	GCAGC	1 cut(s)	575
MaeII	ACGT	2 cut(s)	302, 453
MalI	GATC	3 cut(s)	199, 461, 523
MboI	GATC	3 cut(s)	197, 459, 521
MboII	GAAGA	4 cut(s)	92, 173, 346, 454
MflI	RGATCY	1 cut(s)	521
MluCI	AATT	2 cut(s)	66, 437
MnlI	CCTC	6 cut(s)	23, 155, 496, 501, 576, 579
Mph1103I	ATGCAT	1 cut(s)	492
MseI	TTAA	1 cut(s)	601
MslI	CAYNNNNRTG	3 cut(s)	401, 485, 495
MspA1I	CMGCKG	1 cut(s)	588
MspI	CCGG	1 cut(s)	92
MspR9I	CCNGG	2 cut(s)	235, 317
MvaI	CCWGG	2 cut(s)	235, 317
NdeII	GATC	3 cut(s)	197, 459, 521
NlaIII	CATG	3 cut(s)	42, 249, 406
NsiI	ATGCAT	1 cut(s)	492
NspI	RCATGY	1 cut(s)	249
PaeR7I	CTCGAG	1 cut(s)	375
PaqCI	CACCTGC	1 cut(s)	407
PfeI	GAWTC	1 cut(s)	115
PinAI	ACCGGT	1 cut(s)	91
PkrI	GCNGC	1 cut(s)	590
Psp6I	CCWGG	2 cut(s)	233, 315
PspGI	CCWGG	2 cut(s)	233, 315
PspXI	VCTCGAGB	1 cut(s)	375
PsuI	RGATCY	1 cut(s)	521
RsaI	GTAC	3 cut(s)	24, 282, 530
RsaNI	GTAC	3 cut(s)	23, 281, 529
RseI	CAYNNNNRTG	3 cut(s)	401, 485, 495
SaqAI	TTAA	1 cut(s)	601
SatI	GCNGC	1 cut(s)	589
Sau3AI	GATC	3 cut(s)	197, 459, 521
ScaI	AGTACT	1 cut(s)	530
ScrFI	CCNGG	2 cut(s)	235, 317
Sfr274I	CTCGAG	1 cut(s)	375
SlaI	CTCGAG	1 cut(s)	375
SmiMI	CAYNNNNRTG	3 cut(s)	401, 485, 495
SmlI	CTYRAG	1 cut(s)	375
SmoI	CTYRAG	1 cut(s)	375
Sse9I	AATT	2 cut(s)	66, 437
SsiI	CCGC	3 cut(s)	216, 477, 586
StyD4I	CCNGG	2 cut(s)	233, 315
StyI	CCWWGG	1 cut(s)	321
TaaI	ACNGT	1 cut(s)	368
TaiI	ACGT	2 cut(s)	305, 456
TaqI	TCGA	1 cut(s)	376
TasI	AATT	2 cut(s)	66, 437
TatI	WGTACW	2 cut(s)	22, 528
TfiI	GAWTC	1 cut(s)	115
Tru1I	TTAA	1 cut(s)	601
Tru9I	TTAA	1 cut(s)	601
TscAI	CASTG	1 cut(s)	196
TseI	GCWGC	1 cut(s)	588
TspDTI	ATGAA	2 cut(s)	17, 122
TspGWI	ACGGA	1 cut(s)	42
TspRI	CASTG	1 cut(s)	196
XceI	RCATGY	1 cut(s)	249
XhoI	CTCGAG	1 cut(s)	375
ZrmI	AGTACT	1 cut(s)	530
Zsp2I	ATGCAT	1 cut(s)	492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.