RchiOBHm_Chr4g0415491

Belongs to the thiolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0001874
Physical Location & Seq
Forward (+)
40208307 .. 40209071
765 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 219 bp
ATGGGCGTCACCTTAGAAAATGTTGCTTATCATTTTGGTGTTTCAAGACAGGAGCAAGATCAGGTTGCAGTTGACTCTCATAGAAAGGCAGCTGCTGATATATATGTTGATATCTTTTTACGCTGTGGCCGAGATGTTTCTTTAATTAGTTTAGAAGATGTAACTGGAGAAGGATTTGATATATGCCATGCTGCTGGAAGTGCCCAACATGGTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009507 GO:0009514 GO:0009536 GO:0009611 GO:0009657 GO:0009694 GO:0009695 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010111 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016042 GO:0016043 GO:0016053 GO:0016054 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0023051 GO:0023056 GO:0030258 GO:0031090 GO:0031974 GO:0031981 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072330 GO:0098588 GO:0098805 GO:1901419 GO:1901421 GO:1901575 GO:1901576 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko00071 ko00280 ko00592 ko01040 ko01100 ko01110 ko01130 ko01212 ko03320 ko04146 map00071 map00280 map00592 map01040 map01100 map01110 map01130 map01212 map03320 map04146
Pfam Domains
Protein Families
Thiolase_C Thiolase_N

Protein Analysis

72

Amino Acids

7.76

Weight (kDa)

4.82

Isoelectric Point (pI)

25.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thiolase_N PF00108 1 - 35 2.6e-08 Thiolase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 127
AcyI GRCGYC 1 cut(s) 6
AgsI TTSAA 1 cut(s) 45
AluBI AGCT 2 cut(s) 92, 216
AluI AGCT 2 cut(s) 92, 216
AlwNI CAGNNNCTG 1 cut(s) 95
AoxI GGCC 1 cut(s) 127
ApeKI GCWGC 3 cut(s) 89, 92, 191
BaeGI GKGCMC 1 cut(s) 205
BbvI GCAGC 3 cut(s) 79, 101, 178
BisI GCNGC 3 cut(s) 90, 93, 192
BlsI GCNGC 3 cut(s) 91, 94, 193
BpmI CTGGAG 1 cut(s) 186
BsaHI GRCGYC 1 cut(s) 6
Bse1I ACTGG 1 cut(s) 169
BseNI ACTGG 1 cut(s) 169
BseSI GKGCMC 1 cut(s) 205
BseXI GCAGC 3 cut(s) 79, 101, 178
BshFI GGCC 1 cut(s) 129
BsnI GGCC 1 cut(s) 129
Bsp1286I GDGCHC 1 cut(s) 205
Bsp143I GATC 1 cut(s) 58
BspANI GGCC 1 cut(s) 129
BsrI ACTGG 1 cut(s) 169
BssMI GATC 1 cut(s) 58
BssNI GRCGYC 1 cut(s) 6
BstACI GRCGYC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 13
BstKTI GATC 1 cut(s) 61
BstMBI GATC 1 cut(s) 58
BstMWI GCNNNNNNNGC 1 cut(s) 200
BstSLI GKGCMC 1 cut(s) 205
BstV1I GCAGC 3 cut(s) 79, 101, 178
BstXI CCANNNNNNTGG 1 cut(s) 194
BsuRI GGCC 1 cut(s) 129
CaiI CAGNNNCTG 1 cut(s) 95
CviAII CATG 2 cut(s) 188, 209
CviJI RGCY 3 cut(s) 92, 129, 216
CviKI_1 RGCY 3 cut(s) 92, 129, 216
DdeI CTNAG 1 cut(s) 13
DpnI GATC 1 cut(s) 60
DpnII GATC 1 cut(s) 58
EaeI YGGCCR 1 cut(s) 127
Eco32I GATATC 1 cut(s) 112
EcoRV GATATC 1 cut(s) 112
FaeI CATG 2 cut(s) 191, 212
FaiI YATR 8 cut(s) 81, 101, 103, 105, 182, 184, 189, 210
FatI CATG 2 cut(s) 187, 208
Fnu4HI GCNGC 3 cut(s) 90, 93, 192
Fsp4HI GCNGC 3 cut(s) 90, 93, 192
GluI GCNGC 3 cut(s) 90, 93, 192
GsuI CTGGAG 1 cut(s) 186
HaeIII GGCC 1 cut(s) 129
Hin1I GRCGYC 1 cut(s) 6
Hin1II CATG 2 cut(s) 191, 212
HincII GTYRAC 1 cut(s) 73
HindII GTYRAC 1 cut(s) 73
HinfI GANTC 1 cut(s) 74
Hpy166II GTNNAC 1 cut(s) 73
Hpy188III TCNNGA 1 cut(s) 45
Hpy8I GTNNAC 1 cut(s) 73
HpyAV CCTTC 1 cut(s) 164
HpyCH4V TGCA 1 cut(s) 68
HpyF10VI GCNNNNNNNGC 1 cut(s) 200
HpyF3I CTNAG 1 cut(s) 13
Hsp92I GRCGYC 1 cut(s) 6
Hsp92II CATG 2 cut(s) 191, 212
Kzo9I GATC 1 cut(s) 58
LmnI GCTCC 1 cut(s) 52
LpnPI CCDG 4 cut(s) 35, 47, 150, 180
Lsp1109I GCAGC 3 cut(s) 79, 101, 178
MaeIII GTNAC 2 cut(s) 7, 160
MalI GATC 1 cut(s) 60
MboI GATC 1 cut(s) 58
MboII GAAGA 1 cut(s) 167
MhlI GDGCHC 1 cut(s) 205
MluCI AATT 1 cut(s) 144
MlyI GAGTC 1 cut(s) 68
MseI TTAA 1 cut(s) 143
MslI CAYNNNNRTG 1 cut(s) 36
MspA1I CMGCKG 1 cut(s) 92
MwoI GCNNNNNNNGC 1 cut(s) 200
NdeII GATC 1 cut(s) 58
NlaIII CATG 2 cut(s) 191, 212
NmeAIII GCCGAG 1 cut(s) 155
NmuCI GTSAC 1 cut(s) 7
PcsI WCGNNNNNNNCGW 1 cut(s) 127
PkrI GCNGC 3 cut(s) 91, 94, 193
PleI GAGTC 1 cut(s) 68
PpsI GAGTC 1 cut(s) 68
PstNI CAGNNNCTG 1 cut(s) 95
PvuII CAGCTG 1 cut(s) 92
RseI CAYNNNNRTG 1 cut(s) 36
SaqAI TTAA 1 cut(s) 143
SatI GCNGC 3 cut(s) 90, 93, 192
Sau3AI GATC 1 cut(s) 58
SchI GAGTC 1 cut(s) 68
SduI GDGCHC 1 cut(s) 205
SetI ASST 4 cut(s) 14, 66, 94, 218
SgeI CNNG 8 cut(s) 57, 62, 68, 74, 143, 177, 200, 207
SmiMI CAYNNNNRTG 1 cut(s) 36
Sse9I AATT 1 cut(s) 144
TasI AATT 1 cut(s) 144
Tru1I TTAA 1 cut(s) 143
Tru9I TTAA 1 cut(s) 143
TseFI GTSAC 1 cut(s) 7
TseI GCWGC 3 cut(s) 89, 92, 191
Tsp45I GTSAC 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.