RchiOBHm_Chr3g0461861
ERF Family

Gamma-interferon-inducible lysosomal thiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0001585
Physical Location & Seq
Forward (+)
9807816 .. 9808394
579 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 435 bp
ATGGGTTTTACCAAACTCTTCCTCTTCTTCTTCTTCCTGGTATCAAACCCATCTCAATCTTATGCTGCTGAGAATGTGAGCGTGACTCTCTACTACGAGACTCTGTGTCCTTATTGTGCCGATTTCATAGTGAACCATTTGGCCAAGATCTTCCAGAATGTGCTCATCTCCATCGTCAATCTCAGAATGGTCCCTTGGGGCAACGCTTGGCTCAATTCTGATTTCTGCTTCGCCTGCCAGGTCAGCTTTCTCAAACCCCCAATTGCTCCCCCTTCTTTTATTTTCAGCTACTCACTCATTGTGTTCCAGCTGATAGCTACCTCATTGTCTGTTACGTCCTCAACGACGTCGTTCCTAGTGATGTCAGTGTGTCACGAGCGCCGCCTTATCTTTCCATCTTTTAAATTACATGCCCATGTGACGCAGTCGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04612 map04612
Pfam Domains
Protein Families
GILT

Protein Analysis

144

Amino Acids

16.34

Weight (kDa)

8.33

Isoelectric Point (pI)

34.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GILT PF03227 28 - 80 2.5e-12 Gamma interferon inducible lysosomal thiol reductase (GILT)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 350
AciI CCGC 1 cut(s) 382
AcoI YGGCCR 1 cut(s) 141
AcyI GRCGYC 1 cut(s) 347
AhdI GACNNNNNGTC 1 cut(s) 105
AjnI CCWGG 2 cut(s) 36, 237
AjuI GAANNNNNNNTTGG 2 cut(s) 178, 210
AluBI AGCT 4 cut(s) 246, 288, 310, 317
AluI AGCT 4 cut(s) 246, 288, 310, 317
Alw21I GWGCWC 1 cut(s) 165
Alw26I GTCTC 1 cut(s) 92
AoxI GGCC 1 cut(s) 141
ApeKI GCWGC 1 cut(s) 65
AspLEI GCGC 1 cut(s) 381
AspS9I GGNCC 1 cut(s) 190
AvaII GGWCC 1 cut(s) 190
BalI TGGCCA 1 cut(s) 143
BauI CACGAG 1 cut(s) 374
Bbv12I GWGCWC 1 cut(s) 165
BbvI GCAGC 1 cut(s) 52
BccI CCATC 3 cut(s) 58, 179, 403
BciT130I CCWGG 2 cut(s) 38, 239
BcoDI GTCTC 1 cut(s) 92
BfaI CTAG 1 cut(s) 356
BfoI RGCGCY 1 cut(s) 382
BglII AGATCT 1 cut(s) 147
BisI GCNGC 2 cut(s) 66, 382
BlsI GCNGC 2 cut(s) 67, 383
Bme1390I CCNGG 2 cut(s) 38, 239
Bme18I GGWCC 1 cut(s) 190
BmeRI GACNNNNNGTC 1 cut(s) 105
BmgT120I GGNCC 1 cut(s) 190
BmiI GGNNCC 1 cut(s) 192
BmrFI CCNGG 2 cut(s) 38, 239
BplI GAGNNNNNCTC 2 cut(s) 70, 102
BsaHI GRCGYC 1 cut(s) 347
BsaJI CCNNGG 1 cut(s) 194
BseBI CCWGG 2 cut(s) 38, 239
BseDI CCNNGG 1 cut(s) 194
BseMII CTCAG 2 cut(s) 60, 196
BseXI GCAGC 1 cut(s) 52
BshFI GGCC 1 cut(s) 143
BsiHKAI GWGCWC 1 cut(s) 165
BslFI GGGAC 1 cut(s) 176
BsmAI GTCTC 1 cut(s) 92
BsmFI GGGAC 1 cut(s) 176
BsnI GGCC 1 cut(s) 143
Bsp1286I GDGCHC 1 cut(s) 165
Bsp143I GATC 1 cut(s) 147
BspACI CCGC 1 cut(s) 382
BspANI GGCC 1 cut(s) 143
BspCNI CTCAG 2 cut(s) 61, 195
BspLI GGNNCC 1 cut(s) 192
BssECI CCNNGG 1 cut(s) 194
BssMI GATC 1 cut(s) 147
BssNI GRCGYC 1 cut(s) 347
BssSI CACGAG 1 cut(s) 374
BssT1I CCWWGG 1 cut(s) 194
Bst2BI CACGAG 1 cut(s) 374
Bst2UI CCWGG 2 cut(s) 38, 239
Bst6I CTCTTC 2 cut(s) 23, 29
BstACI GRCGYC 1 cut(s) 347
BstC8I GCNNGC 1 cut(s) 235
BstDEI CTNAG 2 cut(s) 69, 182
BstH2I RGCGCY 1 cut(s) 382
BstHHI GCGC 1 cut(s) 381
BstKTI GATC 1 cut(s) 150
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 1 cut(s) 147
BstMWI GCNNNNNNNGC 2 cut(s) 234, 243
BstNI CCWGG 2 cut(s) 38, 239
BstNSI RCATGY 1 cut(s) 413
BstSCI CCNGG 2 cut(s) 36, 237
BstV1I GCAGC 1 cut(s) 52
BstX2I RGATCY 1 cut(s) 147
BstYI RGATCY 1 cut(s) 147
BsuRI GGCC 1 cut(s) 143
BtsIMutI CAGTG 1 cut(s) 372
Cac8I GCNNGC 1 cut(s) 235
CfoI GCGC 1 cut(s) 381
Cfr13I GGNCC 1 cut(s) 190
CseI GACGC 1 cut(s) 430
CviAII CATG 2 cut(s) 410, 416
CviJI RGCY 6 cut(s) 143, 211, 246, 288, 310, 317
CviKI_1 RGCY 6 cut(s) 143, 211, 246, 288, 310, 317
DdeI CTNAG 2 cut(s) 69, 182
DpnI GATC 1 cut(s) 149
DpnII GATC 1 cut(s) 147
DraI TTTAAA 1 cut(s) 403
DriI GACNNNNNGTC 1 cut(s) 105
EaeI YGGCCR 1 cut(s) 141
Eam1104I CTCTTC 2 cut(s) 23, 29
Eam1105I GACNNNNNGTC 1 cut(s) 105
EarI CTCTTC 2 cut(s) 23, 29
Eco130I CCWWGG 1 cut(s) 194
Eco47I GGWCC 1 cut(s) 190
EcoRII CCWGG 2 cut(s) 36, 237
EcoT14I CCWWGG 1 cut(s) 194
ErhI CCWWGG 1 cut(s) 194
FaeI CATG 2 cut(s) 413, 419
FaiI YATR 4 cut(s) 63, 128, 411, 417
FaqI GGGAC 1 cut(s) 176
FatI CATG 2 cut(s) 409, 415
Fnu4HI GCNGC 2 cut(s) 66, 382
Fsp4HI GCNGC 2 cut(s) 66, 382
FspBI CTAG 1 cut(s) 356
GlaI GCGC 1 cut(s) 380
GluI GCNGC 2 cut(s) 66, 382
HaeII RGCGCY 1 cut(s) 382
HaeIII GGCC 1 cut(s) 143
HgaI GACGC 1 cut(s) 430
HhaI GCGC 1 cut(s) 381
Hin1I GRCGYC 1 cut(s) 347
Hin1II CATG 2 cut(s) 413, 419
Hin6I GCGC 1 cut(s) 379
HinP1I GCGC 1 cut(s) 379
HinfI GANTC 2 cut(s) 85, 100
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 2 cut(s) 185, 220
Hpy188III TCNNGA 2 cut(s) 154, 374
Hpy8I GTNNAC 1 cut(s) 133
Hpy99I CGWCG 2 cut(s) 349, 352
HpyAV CCTTC 1 cut(s) 282
HpyCH4IV ACGT 2 cut(s) 335, 347
HpyF10VI GCNNNNNNNGC 2 cut(s) 234, 243
HpyF3I CTNAG 2 cut(s) 69, 182
HpySE526I ACGT 2 cut(s) 335, 347
Hsp92I GRCGYC 1 cut(s) 347
Hsp92II CATG 2 cut(s) 413, 419
HspAI GCGC 1 cut(s) 379
Kzo9I GATC 1 cut(s) 147
LmnI GCTCC 1 cut(s) 271
LpnPI CCDG 7 cut(s) 23, 50, 167, 224, 247, 251, 320
Lsp1109I GCAGC 1 cut(s) 52
MaeI CTAG 1 cut(s) 356
MaeII ACGT 2 cut(s) 335, 347
MaeIII GTNAC 4 cut(s) 82, 331, 371, 418
MalI GATC 1 cut(s) 149
MboI GATC 1 cut(s) 147
MboII GAAGA 6 cut(s) 10, 16, 19, 22, 25, 142
MfeI CAATTG 1 cut(s) 261
MflI RGATCY 1 cut(s) 147
MhlI GDGCHC 1 cut(s) 165
MlsI TGGCCA 1 cut(s) 143
MluCI AATT 4 cut(s) 214, 261, 404, 430
MluNI TGGCCA 1 cut(s) 143
MlyI GAGTC 2 cut(s) 79, 94
MnlI CCTC 3 cut(s) 32, 331, 349
Mox20I TGGCCA 1 cut(s) 143
MscI TGGCCA 1 cut(s) 143
MseI TTAA 1 cut(s) 402
MslI CAYNNNNRTG 1 cut(s) 414
Msp20I TGGCCA 1 cut(s) 143
MspA1I CMGCKG 1 cut(s) 310
MspR9I CCNGG 2 cut(s) 38, 239
MunI CAATTG 1 cut(s) 261
MvaI CCWGG 2 cut(s) 38, 239
MwoI GCNNNNNNNGC 2 cut(s) 234, 243
NdeII GATC 1 cut(s) 147
NlaIII CATG 2 cut(s) 413, 419
NlaIV GGNNCC 1 cut(s) 192
NmuCI GTSAC 3 cut(s) 82, 371, 418
NspI RCATGY 1 cut(s) 413
PcsI WCGNNNNNNNCGW 1 cut(s) 341
PflFI GACNNNGTC 1 cut(s) 424
PkrI GCNGC 2 cut(s) 67, 383
PleI GAGTC 2 cut(s) 79, 94
PpsI GAGTC 2 cut(s) 79, 94
Psp6I CCWGG 2 cut(s) 36, 237
PspGI CCWGG 2 cut(s) 36, 237
PspN4I GGNNCC 1 cut(s) 192
PspPI GGNCC 1 cut(s) 190
PsuI RGATCY 1 cut(s) 147
PsyI GACNNNGTC 1 cut(s) 424
PvuII CAGCTG 1 cut(s) 310
RseI CAYNNNNRTG 1 cut(s) 414
SaqAI TTAA 1 cut(s) 402
SatI GCNGC 2 cut(s) 66, 382
Sau3AI GATC 1 cut(s) 147
Sau96I GGNCC 1 cut(s) 190
SchI GAGTC 2 cut(s) 79, 94
ScrFI CCNGG 2 cut(s) 38, 239
SduI GDGCHC 1 cut(s) 165
SetI ASST 8 cut(s) 243, 248, 290, 312, 319, 323, 338, 350
SinI GGWCC 1 cut(s) 190
SmiMI CAYNNNNRTG 1 cut(s) 414
Sse9I AATT 4 cut(s) 214, 261, 404, 430
SsiI CCGC 1 cut(s) 382
SspMI CTAG 1 cut(s) 356
StyD4I CCNGG 2 cut(s) 36, 237
StyI CCWWGG 1 cut(s) 194
TaiI ACGT 2 cut(s) 338, 350
TaqI TCGA 1 cut(s) 428
TasI AATT 4 cut(s) 214, 261, 404, 430
TauI GCSGC 1 cut(s) 384
Tru1I TTAA 1 cut(s) 402
Tru9I TTAA 1 cut(s) 402
TscAI CASTG 1 cut(s) 372
TseFI GTSAC 3 cut(s) 82, 371, 418
TseI GCWGC 1 cut(s) 65
Tsp45I GTSAC 3 cut(s) 82, 371, 418
TspDTI ATGAA 1 cut(s) 115
TspRI CASTG 1 cut(s) 372
Tth111I GACNNNGTC 1 cut(s) 424
VpaK11BI GGWCC 1 cut(s) 190
XceI RCATGY 1 cut(s) 413
XspI CTAG 1 cut(s) 356
ZraI GACGTC 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.