Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001585

Physical Location & Seq

Genomic Coordinates Forward (+)

9861308 .. 9862537

Gene Structure 1230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGGTTTTACCAAACTCTTCCTCTTCTTCTTCTTCCTGGTCTCAAACCCATTTCAATCTTATGCTGCTGAGAATGTGAGTGTGACTCTCTACTACGAGACTCTGTGTCCTTATTGTGCCGATTTCATAGTGAACCATTTGGCCAAGATCTTCCAGAATGGGCTCATCTCCATCGTCAATCTCAGAATGGTCCCTTGGGGCAATGCTTGGCTCAATTCCGATGGCTCCTTCGCCTGCCAGCATGGAACAGATGAATGCTTGCTCAACACAATTGAGGCATGCACCATCACCATCTATCCTAATGTGGTAAAAATCGGCATTTTACATTCATCCACTGCGTTGAGAGGCTCACGTTGCAGAACAAACACAGTAAATGAGCCGATTGCTTTGAAATGTCGAAGTTGGGGACTGTACCTATCGATTGCTACAACAGTGGATATGGCAATCAGGACTACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04612 map04612

Pfam Domains

Protein Families

GILT

Protein Analysis

152

Amino Acids

17.01

Weight (kDa)

7.57

Isoelectric Point (pI)

32.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GILT	PF03227	28 - 101	7.4e-25	Gamma interferon inducible lysosomal thiol reductase (GILT)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01580
fragaria_vesca	FvH4_6g03531 FvH4_6g07560 FvH4_6g10801
malus_domestica	MD04G1164200.v1.1 MD11G1065000.v1.1
prunus_persica	Prupe.6G283300_v2.0.a1 Prupe.6G283300_v2.0.a1 Prupe.6G283300_v2.0.a1
pyrus_communis	pycom04g14660 pycom11g05510
rosa_chinensis	RchiOBHm_Chr3g0461861 RchiOBHm_Chr3g0461891 RchiOBHm_Chr3g0461941 RchiOBHm_Chr3g0462011 RchiOBHm_Chr5g0071111 RchiOBHm_Chr7g0217861
rosa_laevigata	RLG00000002432
rosa_multiflora	Rmu_sc0000540.1_g000030 Rmu_sc0000791.1_g000011 Rmu_sc0002003.1_g000003 Rmu_sc0003638.1_g000004 Rmu_sc0004530.1_g000001 Rmu_sc0005209.1_g000007 Rmu_sc0034388.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241640 Rroxscaffold_6G00417780
rosa_rugosa	Rorug01G0192300 Rorug07G0171400 Rorug07G0171500 Rorug07G0171600
rosa_samantha	Rh3AG112300 Rh3AG112400 Rh3CG117700 Rh3CG117800 Rh3CG118100 Rh3DG356800 Rh3DG357100 Rh4AG333400 Rh4BG342200 Rh4CG356700 Rh5AG465800 Rh5CG509200 Rh5DG496100 Rh7AG313600 Rh7BG304200 Rh7DG312100
rosa_wichuraiana	Rw0G007880 Rw1G014510 Rw7G026550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	141
AfaI	GTAC	1 cut(s)	413
AgsI	TTSAA	2 cut(s)	56, 391
AhdI	GACNNNNNGTC	1 cut(s)	105
AjnI	CCWGG	1 cut(s)	36
AjuI	GAANNNNNNNTTGG	2 cut(s)	178, 210
Alw26I	GTCTC	2 cut(s)	46, 92
AoxI	GGCC	1 cut(s)	141
ApeKI	GCWGC	1 cut(s)	65
AspS9I	GGNCC	1 cut(s)	190
AsuHPI	GGTGA	1 cut(s)	280
AvaII	GGWCC	1 cut(s)	190
BalI	TGGCCA	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	165
BbvI	GCAGC	1 cut(s)	52
BccI	CCATC	4 cut(s)	179, 215, 293, 299
BciT130I	CCWGG	1 cut(s)	38
BcoDI	GTCTC	2 cut(s)	46, 92
BglII	AGATCT	1 cut(s)	147
BisI	GCNGC	1 cut(s)	66
BlsI	GCNGC	1 cut(s)	67
Bme1390I	CCNGG	1 cut(s)	38
Bme18I	GGWCC	1 cut(s)	190
BmeRI	GACNNNNNGTC	1 cut(s)	105
BmgT120I	GGNCC	1 cut(s)	190
BmiI	GGNNCC	2 cut(s)	192, 226
BmrFI	CCNGG	1 cut(s)	38
BplI	GAGNNNNNCTC	2 cut(s)	70, 102
Bsa29I	ATCGAT	1 cut(s)	419
BsaI	GGTCTC	1 cut(s)	46
BsaJI	CCNNGG	1 cut(s)	194
Bse3DI	GCAATG	1 cut(s)	208
BseBI	CCWGG	1 cut(s)	38
BseCI	ATCGAT	1 cut(s)	419
BseDI	CCNNGG	1 cut(s)	194
BseGI	GGATG	1 cut(s)	329
BseMI	GCAATG	1 cut(s)	208
BseMII	CTCAG	2 cut(s)	60, 196
BseXI	GCAGC	1 cut(s)	52
BshFI	GGCC	1 cut(s)	143
BshVI	ATCGAT	1 cut(s)	419
BslFI	GGGAC	2 cut(s)	176, 420
BsmAI	GTCTC	2 cut(s)	46, 92
BsmFI	GGGAC	2 cut(s)	176, 420
BsmI	GAATGC	1 cut(s)	260
BsnI	GGCC	1 cut(s)	143
Bso31I	GGTCTC	1 cut(s)	46
Bsp1286I	GDGCHC	1 cut(s)	165
Bsp143I	GATC	1 cut(s)	147
BspANI	GGCC	1 cut(s)	143
BspCNI	CTCAG	2 cut(s)	61, 195
BspDI	ATCGAT	1 cut(s)	419
BspLI	GGNNCC	2 cut(s)	192, 226
BspTNI	GGTCTC	1 cut(s)	46
BsrDI	GCAATG	1 cut(s)	208
BssECI	CCNNGG	1 cut(s)	194
BssMI	GATC	1 cut(s)	147
BssT1I	CCWWGG	1 cut(s)	194
Bst2UI	CCWGG	1 cut(s)	38
Bst4CI	ACNGT	3 cut(s)	370, 411, 433
Bst6I	CTCTTC	2 cut(s)	23, 29
BstC8I	GCNNGC	4 cut(s)	235, 239, 260, 280
BstDEI	CTNAG	2 cut(s)	69, 182
BstF5I	GGATG	1 cut(s)	329
BstKTI	GATC	1 cut(s)	150
BstMAI	GTCTC	2 cut(s)	46, 92
BstMBI	GATC	1 cut(s)	147
BstMWI	GCNNNNNNNGC	1 cut(s)	354
BstNI	CCWGG	1 cut(s)	38
BstNSI	RCATGY	1 cut(s)	282
BstSCI	CCNGG	1 cut(s)	36
BstV1I	GCAGC	1 cut(s)	52
BstX2I	RGATCY	1 cut(s)	147
BstYI	RGATCY	1 cut(s)	147
Bsu15I	ATCGAT	1 cut(s)	419
BsuRI	GGCC	1 cut(s)	143
BsuTUI	ATCGAT	1 cut(s)	419
BtsCI	GGATG	1 cut(s)	329
BtsI	GCAGTG	1 cut(s)	333
BtsIMutI	CAGTG	2 cut(s)	333, 438
Cac8I	GCNNGC	4 cut(s)	235, 239, 260, 280
Cfr13I	GGNCC	1 cut(s)	190
ClaI	ATCGAT	1 cut(s)	419
Csp6I	GTAC	1 cut(s)	412
CviAII	CATG	2 cut(s)	242, 279
CviJI	RGCY	6 cut(s)	143, 163, 211, 225, 348, 379
CviKI_1	RGCY	6 cut(s)	143, 163, 211, 225, 348, 379
CviQI	GTAC	1 cut(s)	412
DdeI	CTNAG	2 cut(s)	69, 182
DpnI	GATC	1 cut(s)	149
DpnII	GATC	1 cut(s)	147
DriI	GACNNNNNGTC	1 cut(s)	105
EaeI	YGGCCR	1 cut(s)	141
Eam1104I	CTCTTC	2 cut(s)	23, 29
Eam1105I	GACNNNNNGTC	1 cut(s)	105
EarI	CTCTTC	2 cut(s)	23, 29
Eco130I	CCWWGG	1 cut(s)	194
Eco24I	GRGCYC	1 cut(s)	165
Eco31I	GGTCTC	1 cut(s)	46
Eco47I	GGWCC	1 cut(s)	190
EcoRII	CCWGG	1 cut(s)	36
EcoT14I	CCWWGG	1 cut(s)	194
EcoT38I	GRGCYC	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	194
FaeI	CATG	2 cut(s)	245, 282
FaiI	YATR	5 cut(s)	63, 128, 243, 280, 440
FaqI	GGGAC	2 cut(s)	176, 420
FatI	CATG	2 cut(s)	241, 278
Fnu4HI	GCNGC	1 cut(s)	66
FokI	GGATG	1 cut(s)	316
FriOI	GRGCYC	1 cut(s)	165
Fsp4HI	GCNGC	1 cut(s)	66
GluI	GCNGC	1 cut(s)	66
HaeIII	GGCC	1 cut(s)	143
Hin1II	CATG	2 cut(s)	245, 282
HinfI	GANTC	2 cut(s)	85, 100
HphI	GGTGA	1 cut(s)	280
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	2 cut(s)	185, 220
Hpy188III	TCNNGA	2 cut(s)	154, 448
Hpy8I	GTNNAC	1 cut(s)	133
HpyAV	CCTTC	1 cut(s)	238
HpyCH4III	ACNGT	3 cut(s)	370, 411, 433
HpyCH4IV	ACGT	1 cut(s)	352
HpyCH4V	TGCA	2 cut(s)	282, 357
HpyF10VI	GCNNNNNNNGC	1 cut(s)	354
HpyF3I	CTNAG	2 cut(s)	69, 182
HpySE526I	ACGT	1 cut(s)	352
Hsp92II	CATG	2 cut(s)	245, 282
Kzo9I	GATC	1 cut(s)	147
LmnI	GCTCC	1 cut(s)	230
LpnPI	CCDG	6 cut(s)	23, 50, 167, 247, 251, 433
Lsp1109I	GCAGC	1 cut(s)	52
MaeII	ACGT	1 cut(s)	352
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	1 cut(s)	149
MboI	GATC	1 cut(s)	147
MboII	GAAGA	6 cut(s)	10, 16, 19, 22, 25, 142
MfeI	CAATTG	1 cut(s)	270
MflI	RGATCY	1 cut(s)	147
MhlI	GDGCHC	1 cut(s)	165
MlsI	TGGCCA	1 cut(s)	143
MluCI	AATT	2 cut(s)	214, 270
MluNI	TGGCCA	1 cut(s)	143
MlyI	GAGTC	2 cut(s)	79, 94
MnlI	CCTC	3 cut(s)	32, 268, 338
Mox20I	TGGCCA	1 cut(s)	143
MscI	TGGCCA	1 cut(s)	143
Msp20I	TGGCCA	1 cut(s)	143
MspR9I	CCNGG	1 cut(s)	38
MunI	CAATTG	1 cut(s)	270
Mva1269I	GAATGC	1 cut(s)	260
MvaI	CCWGG	1 cut(s)	38
MwoI	GCNNNNNNNGC	1 cut(s)	354
NdeII	GATC	1 cut(s)	147
NlaIII	CATG	2 cut(s)	245, 282
NlaIV	GGNNCC	2 cut(s)	192, 226
NmuCI	GTSAC	1 cut(s)	82
NspI	RCATGY	1 cut(s)	282
PaeI	GCATGC	1 cut(s)	282
PctI	GAATGC	1 cut(s)	260
PkrI	GCNGC	1 cut(s)	67
PleI	GAGTC	2 cut(s)	79, 94
PpsI	GAGTC	2 cut(s)	79, 94
Psp6I	CCWGG	1 cut(s)	36
PspGI	CCWGG	1 cut(s)	36
PspN4I	GGNNCC	2 cut(s)	192, 226
PspPI	GGNCC	1 cut(s)	190
PsuI	RGATCY	1 cut(s)	147
RsaI	GTAC	1 cut(s)	413
RsaNI	GTAC	1 cut(s)	412
SatI	GCNGC	1 cut(s)	66
Sau3AI	GATC	1 cut(s)	147
Sau96I	GGNCC	1 cut(s)	190
SchI	GAGTC	2 cut(s)	79, 94
ScrFI	CCNGG	1 cut(s)	38
SduI	GDGCHC	1 cut(s)	165
SetI	ASST	3 cut(s)	355, 417, 458
SinI	GGWCC	1 cut(s)	190
SphI	GCATGC	1 cut(s)	282
Sse9I	AATT	2 cut(s)	214, 270
StyD4I	CCNGG	1 cut(s)	36
StyI	CCWWGG	1 cut(s)	194
TaaI	ACNGT	3 cut(s)	370, 411, 433
TaiI	ACGT	1 cut(s)	355
TaqI	TCGA	2 cut(s)	397, 419
TasI	AATT	2 cut(s)	214, 270
TscAI	CASTG	2 cut(s)	340, 438
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	1 cut(s)	65
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	3 cut(s)	115, 267, 318
TspRI	CASTG	2 cut(s)	340, 438
VpaK11BI	GGWCC	1 cut(s)	190
XceI	RCATGY	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.