RchiOBHm_Chr3g0470741

peroxisome organization

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0001014
Physical Location & Seq
Reverse (-)
16695996 .. 16696925
930 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 681 bp
ATGTCGCCAGACTGCGACGTCTGCACCTGCTGCGCTTGCCAGAATGGCGGCTCCAACGTTGATCACGCCGAAGATCTGGTATGCGCGCATTACTGGAAATCTGATCCCTCTCCATCGTCGTTTTGCTATTCCTCTTCAGTCAAATACGTTCCTGTGCCGTCGAGCGATTCCAAGAAGCTACGGCGGGTCGTGACTGCTTTGATTAAGGGTTTCACCATCGGCGCCGGCCTCAAAGGCTGCCTCGCCGTCTTCTCCATCCTAGCTAAACTCAGAAAGAGAAAGCTCTTAGCCTCTCTTAGCACTGAGGGTGCGATTATGAATAATGAAGCAATTGTTGCTATTTTGAACGAGACCTTGAGATATGGTCTGTTTCTTGGGACTTTTGCAGGCATATTTGTTTCAGTGGATGAGATTATTGCTTCTTTGGGAGGCCACCGTAGGCATTTCAGGACAGCTAAGTGGAGGGCTTTGTTAGCAGGGCTTATAGCAGGACCGTCTATGGTTCTTACCGGGCATAACACGCAGCATACGTGCTTGGCTGTATACATACTTATGAGTGCTGCCGTGTTGGCCACGCGTTGTGGGATTAAAAGCAAACGGTTTGGTCGTGTTTGTAGACCTCTCACTTGGAAGCACGGTGACGTTTTCCTTATGTGTCTCTCCTCTTCGCAAATTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TMEM135_C_rich

Protein Analysis

226

Amino Acids

24.42

Weight (kDa)

9.38

Isoelectric Point (pI)

46.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 35
AasI GACNNNNNNGTC 1 cut(s) 17
AatII GACGTC 1 cut(s) 21
Acc36I ACCTGC 1 cut(s) 35
AccB1I GGYRCC 1 cut(s) 221
AccI GTMKAC 2 cut(s) 543, 616
AccII CGCG 2 cut(s) 86, 577
AciI CCGC 2 cut(s) 48, 184
AclI AACGTT 1 cut(s) 57
AclWI GGATC 1 cut(s) 98
AcoI YGGCCR 1 cut(s) 570
AcsI RAATTY 1 cut(s) 672
AcuI CTGAAG 1 cut(s) 120
AcyI GRCGYC 2 cut(s) 18, 222
AflIII ACRYGT 1 cut(s) 575
AgsI TTSAA 1 cut(s) 346
AluBI AGCT 4 cut(s) 178, 263, 283, 455
AluI AGCT 4 cut(s) 178, 263, 283, 455
Alw26I GTCTC 2 cut(s) 344, 662
AlwI GGATC 1 cut(s) 98
AoxI GGCC 3 cut(s) 226, 430, 570
ApeKI GCWGC 4 cut(s) 30, 237, 523, 560
ApoI RAATTY 1 cut(s) 672
AspLEI GCGC 4 cut(s) 35, 86, 88, 224
AspS9I GGNCC 1 cut(s) 491
AsuC2I CCSGG 1 cut(s) 511
AsuHPI GGTGA 2 cut(s) 205, 650
AvaII GGWCC 1 cut(s) 491
BalI TGGCCA 1 cut(s) 572
BanI GGYRCC 1 cut(s) 221
BbsI GAAGAC 1 cut(s) 241
BbvI GCAGC 4 cut(s) 17, 224, 535, 547
BccI CCATC 3 cut(s) 121, 224, 263
BceAI ACGGC 4 cut(s) 142, 197, 230, 548
BclI TGATCA 1 cut(s) 61
BcnI CCSGG 1 cut(s) 511
BcoDI GTCTC 2 cut(s) 344, 662
BfaI CTAG 1 cut(s) 260
BfoI RGCGCY 1 cut(s) 225
BfuAI ACCTGC 1 cut(s) 35
BglI GCCNNNNNGGC 3 cut(s) 45, 234, 569
BglII AGATCT 1 cut(s) 73
BisI GCNGC 5 cut(s) 31, 49, 238, 524, 561
BlsI GCNGC 5 cut(s) 32, 50, 239, 525, 562
Bme1390I CCNGG 1 cut(s) 511
Bme18I GGWCC 1 cut(s) 491
BmgT120I GGNCC 1 cut(s) 491
BmiI GGNNCC 2 cut(s) 52, 223
BmrFI CCNGG 1 cut(s) 511
BpiI GAAGAC 1 cut(s) 241
BpuEI CTTGAG 1 cut(s) 376
BpuMI CCSGG 1 cut(s) 511
BsaAI YACGTR 1 cut(s) 531
BsaHI GRCGYC 2 cut(s) 18, 222
BsaI GGTCTC 1 cut(s) 344
Bse118I RCCGGY 1 cut(s) 224
Bse1I ACTGG 1 cut(s) 98
BseGI GGATG 2 cut(s) 255, 412
BseMII CTCAG 2 cut(s) 283, 294
BseNI ACTGG 1 cut(s) 98
BsePI GCGCGC 1 cut(s) 84
BseRI GAGGAG 1 cut(s) 652
BseXI GCAGC 4 cut(s) 17, 224, 535, 547
BsgI GTGCAG 1 cut(s) 7
Bsh1236I CGCG 2 cut(s) 86, 577
BshFI GGCC 3 cut(s) 228, 432, 572
BshNI GGYRCC 1 cut(s) 221
BsiSI CCGG 2 cut(s) 225, 510
BslFI GGGAC 1 cut(s) 391
BsmAI GTCTC 2 cut(s) 344, 662
BsmFI GGGAC 1 cut(s) 391
BsnI GGCC 3 cut(s) 228, 432, 572
Bso31I GGTCTC 1 cut(s) 344
Bsp143I GATC 3 cut(s) 61, 73, 103
BspACI CCGC 2 cut(s) 48, 184
BspANI GGCC 3 cut(s) 228, 432, 572
BspCNI CTCAG 2 cut(s) 282, 295
BspFNI CGCG 2 cut(s) 86, 577
BspLI GGNNCC 2 cut(s) 52, 223
BspMI ACCTGC 1 cut(s) 35
BspPI GGATC 1 cut(s) 98
BspT107I GGYRCC 1 cut(s) 221
BspTNI GGTCTC 1 cut(s) 344
BsrFI RCCGGY 1 cut(s) 224
BsrI ACTGG 1 cut(s) 98
BssAI RCCGGY 1 cut(s) 224
BssHII GCGCGC 1 cut(s) 84
BssMI GATC 3 cut(s) 61, 73, 103
BssNAI GTATAC 1 cut(s) 544
BssNI GRCGYC 2 cut(s) 18, 222
Bst1107I GTATAC 1 cut(s) 544
Bst4CI ACNGT 4 cut(s) 437, 495, 600, 638
Bst6I CTCTTC 2 cut(s) 139, 670
BstACI GRCGYC 2 cut(s) 18, 222
BstAPI GCANNNNNTGC 2 cut(s) 30, 335
BstBAI YACGTR 1 cut(s) 531
BstC8I GCNNGC 4 cut(s) 37, 86, 226, 388
BstDEI CTNAG 5 cut(s) 269, 286, 296, 303, 456
BstF5I GGATG 2 cut(s) 255, 412
BstFNI CGCG 2 cut(s) 86, 577
BstH2I RGCGCY 1 cut(s) 225
BstHHI GCGC 4 cut(s) 35, 86, 88, 224
BstKTI GATC 3 cut(s) 64, 76, 106
BstMAI GTCTC 2 cut(s) 344, 662
BstMBI GATC 3 cut(s) 61, 73, 103
BstMWI GCNNNNNNNGC 9 cut(s) 21, 30, 36, 45, 234, 335, 473, 520, 569
BstSCI CCNGG 1 cut(s) 509
BstUI CGCG 2 cut(s) 86, 577
BstV1I GCAGC 4 cut(s) 17, 224, 535, 547
BstV2I GAAGAC 1 cut(s) 241
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
BstZ17I GTATAC 1 cut(s) 544
BsuRI GGCC 3 cut(s) 228, 432, 572
BtsCI GGATG 2 cut(s) 255, 412
BtsIMutI CAGTG 2 cut(s) 300, 408
BveI ACCTGC 1 cut(s) 35
Cac8I GCNNGC 4 cut(s) 37, 86, 226, 388
CfoI GCGC 4 cut(s) 35, 86, 88, 224
Cfr10I RCCGGY 1 cut(s) 224
Cfr13I GGNCC 1 cut(s) 491
DdeI CTNAG 5 cut(s) 269, 286, 296, 303, 456
DinI GGCGCC 1 cut(s) 223
DpnI GATC 3 cut(s) 63, 75, 105
DpnII GATC 3 cut(s) 61, 73, 103
DrdI GACNNNNNNGTC 1 cut(s) 17
DseDI GACNNNNNNGTC 1 cut(s) 17
EaeI YGGCCR 1 cut(s) 570
Eam1104I CTCTTC 2 cut(s) 139, 670
EarI CTCTTC 2 cut(s) 139, 670
Eco31I GGTCTC 1 cut(s) 344
Eco47I GGWCC 1 cut(s) 491
Eco57I CTGAAG 1 cut(s) 120
EgeI GGCGCC 1 cut(s) 223
EheI GGCGCC 1 cut(s) 223
FaqI GGGAC 1 cut(s) 391
FauI CCCGC 1 cut(s) 177
FbaI TGATCA 1 cut(s) 61
FblI GTMKAC 2 cut(s) 543, 616
Fnu4HI GCNGC 5 cut(s) 31, 49, 238, 524, 561
FokI GGATG 2 cut(s) 242, 419
Fsp4HI GCNGC 5 cut(s) 31, 49, 238, 524, 561
FspBI CTAG 1 cut(s) 260
GlaI GCGC 4 cut(s) 34, 85, 87, 223
GluI GCNGC 5 cut(s) 31, 49, 238, 524, 561
HaeII RGCGCY 1 cut(s) 225
HaeIII GGCC 3 cut(s) 228, 432, 572
HapII CCGG 2 cut(s) 225, 510
HhaI GCGC 4 cut(s) 35, 86, 88, 224
Hin1I GRCGYC 2 cut(s) 18, 222
Hin6I GCGC 4 cut(s) 33, 84, 86, 222
HinP1I GCGC 4 cut(s) 33, 84, 86, 222
HinfI GANTC 1 cut(s) 167
HpaII CCGG 2 cut(s) 225, 510
HphI GGTGA 2 cut(s) 205, 650
Hpy166II GTNNAC 2 cut(s) 544, 617
Hpy188I TCNGA 2 cut(s) 103, 272
Hpy188III TCNNGA 2 cut(s) 190, 448
Hpy8I GTNNAC 2 cut(s) 544, 617
Hpy99I CGWCG 3 cut(s) 20, 121, 163
HpyCH4III ACNGT 4 cut(s) 437, 495, 600, 638
HpyCH4IV ACGT 5 cut(s) 18, 57, 147, 530, 642
HpyCH4V TGCA 2 cut(s) 24, 386
HpyF10VI GCNNNNNNNGC 9 cut(s) 21, 30, 36, 45, 234, 335, 473, 520, 569
HpyF3I CTNAG 5 cut(s) 269, 286, 296, 303, 456
HpySE526I ACGT 5 cut(s) 18, 57, 147, 530, 642
Hsp92I GRCGYC 2 cut(s) 18, 222
HspAI GCGC 4 cut(s) 33, 84, 86, 222
KasI GGCGCC 1 cut(s) 221
KroI GCCGGC 1 cut(s) 224
KroNI GCCGGC 1 cut(s) 226
Ksp22I TGATCA 1 cut(s) 61
Kzo9I GATC 3 cut(s) 61, 73, 103
LmnI GCTCC 1 cut(s) 56
Lsp1109I GCAGC 4 cut(s) 17, 224, 535, 547
MaeI CTAG 1 cut(s) 260
MaeII ACGT 5 cut(s) 18, 57, 147, 530, 642
MaeIII GTNAC 2 cut(s) 190, 638
MalI GATC 3 cut(s) 63, 75, 105
MboI GATC 3 cut(s) 61, 73, 103
MboII GAAGA 4 cut(s) 83, 126, 241, 657
MfeI CAATTG 1 cut(s) 330
MflI RGATCY 1 cut(s) 73
MlsI TGGCCA 1 cut(s) 572
MluCI AATT 2 cut(s) 330, 672
MluI ACGCGT 1 cut(s) 575
MluNI TGGCCA 1 cut(s) 572
Mly113I GGCGCC 1 cut(s) 222
MmeI TCCRAC 1 cut(s) 78
Mox20I TGGCCA 1 cut(s) 572
MroNI GCCGGC 1 cut(s) 224
MscI TGGCCA 1 cut(s) 572
MseI TTAA 2 cut(s) 204, 588
MslI CAYNNNNRTG 1 cut(s) 551
Msp20I TGGCCA 1 cut(s) 572
MspI CCGG 2 cut(s) 225, 510
MspR9I CCNGG 1 cut(s) 511
MunI CAATTG 1 cut(s) 330
MvnI CGCG 2 cut(s) 86, 577
MwoI GCNNNNNNNGC 9 cut(s) 21, 30, 36, 45, 234, 335, 473, 520, 569
NaeI GCCGGC 1 cut(s) 226
NarI GGCGCC 1 cut(s) 222
NciI CCSGG 1 cut(s) 511
NdeII GATC 3 cut(s) 61, 73, 103
NgoMIV GCCGGC 1 cut(s) 224
NlaIV GGNNCC 2 cut(s) 52, 223
NmuCI GTSAC 2 cut(s) 190, 638
PaqCI CACCTGC 1 cut(s) 35
PauI GCGCGC 1 cut(s) 84
PcsI WCGNNNNNNNCGW 2 cut(s) 527, 604
PdiI GCCGGC 1 cut(s) 226
PfeI GAWTC 1 cut(s) 167
PkrI GCNGC 5 cut(s) 32, 50, 239, 525, 562
PluTI GGCGCC 1 cut(s) 225
Ppu21I YACGTR 1 cut(s) 531
Psp1406I AACGTT 1 cut(s) 57
PspN4I GGNNCC 2 cut(s) 52, 223
PspPI GGNCC 1 cut(s) 491
PsuI RGATCY 1 cut(s) 73
PteI GCGCGC 1 cut(s) 84
RseI CAYNNNNRTG 1 cut(s) 551
SaqAI TTAA 2 cut(s) 204, 588
SatI GCNGC 5 cut(s) 31, 49, 238, 524, 561
Sau3AI GATC 3 cut(s) 61, 73, 103
Sau96I GGNCC 1 cut(s) 491
ScrFI CCNGG 1 cut(s) 511
SfoI GGCGCC 1 cut(s) 223
SinI GGWCC 1 cut(s) 491
SmiMI CAYNNNNRTG 1 cut(s) 551
SmlI CTYRAG 1 cut(s) 355
SmoI CTYRAG 1 cut(s) 355
Sse9I AATT 2 cut(s) 330, 672
SsiI CCGC 2 cut(s) 48, 184
SspDI GGCGCC 1 cut(s) 221
SspMI CTAG 1 cut(s) 260
StyD4I CCNGG 1 cut(s) 509
TaaI ACNGT 4 cut(s) 437, 495, 600, 638
TaiI ACGT 5 cut(s) 21, 60, 150, 533, 645
TaqI TCGA 1 cut(s) 161
TasI AATT 2 cut(s) 330, 672
TauI GCSGC 1 cut(s) 51
TfiI GAWTC 1 cut(s) 167
Tru1I TTAA 2 cut(s) 204, 588
Tru9I TTAA 2 cut(s) 204, 588
TscAI CASTG 2 cut(s) 307, 408
TseFI GTSAC 2 cut(s) 190, 638
TseI GCWGC 4 cut(s) 30, 237, 523, 560
Tsp45I GTSAC 2 cut(s) 190, 638
TspDTI ATGAA 2 cut(s) 332, 339
TspRI CASTG 2 cut(s) 307, 408
VpaK11BI GGWCC 1 cut(s) 491
XapI RAATTY 1 cut(s) 672
XmiI GTMKAC 2 cut(s) 543, 616
XspI CTAG 1 cut(s) 260
ZraI GACGTC 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.