Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000870

Physical Location & Seq

Genomic Coordinates Forward (+)

7513984 .. 7515287

Gene Structure 1304 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGGCGATTCTTCATCAAAAGGACTCGCTCTGTTCTCTCCTTACAAGATGGGCAACTCCAATCTCTCTCACAGGGTCGTGCTTGCGCCAATGGCAAGGTGTCGAGCTCCGAACGAAATTCCACAGCCAGCGATGATTGAGTATTACTCTCAGAGATCAACCCCCGGTGGCCTTTCTTATCACCGAAGCCACTCCGCTCTCCGACACGAGTTAATTTGTTATGGTGGAAGCAGGTATCCACGTGTTCCTGGGATTTATAGAGATGAACAGGTTGAGGAATGGAGGAAGGTGGTCGACACCGTTCACGCCAAAGGTGCCATTATTTTCTGTCAACTTTGGCATGTAGGTCGTGCTTCTCATCAAGGTAATTTGTTATATATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009605 GO:0009607 GO:0009620 GO:0009694 GO:0009695 GO:0009791 GO:0009908 GO:0009987 GO:0010035 GO:0010193 GO:0010817 GO:0016053 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0019752 GO:0022414 GO:0031407 GO:0031408 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042579 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046677 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0090567 GO:0099402 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

127

Amino Acids

14.33

Weight (kDa)

9.47

Isoelectric Point (pI)

47.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	11 - 120	3.6e-21	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06050 AT2G06050 AT2G06050
fragaria_vesca	FvH4_1g08451 FvH4_1g08452 FvH4_1g08453 FvH4_1g08454 FvH4_1g08510 FvH4_1g08510 FvH4_1g08510 FvH4_1g08510
malus_domestica	MD00G1142600.v1.1 MD02G1089100.v1.1 MD12G1067300.v1.1 MD15G1216200.v1.1
prunus_persica	Prupe.7G200800_v2.0.a1
pyrus_communis	pycom02g07130 pycom15g19180
rosa_chinensis	RchiOBHm_Chr2g0094561 RchiOBHm_Chr2g0094611 RchiOBHm_Chr2g0094631 RchiOBHm_Chr2g0094641 RchiOBHm_Chr2g0150041 RchiOBHm_Chr7g0211621 RchiOBHm_Chr7g0230281
rosa_laevigata	RLG00000002990 RLG00000016504 RLG00000016506 RLG00000016507 RLG00000020462
rosa_multiflora	Rmu_co8133296.1_g000001 Rmu_co8390375.1_g000001 Rmu_sc0003760.1_g000017 Rmu_sc0004232.1_g000012 Rmu_sc0004359.1_g000033 Rmu_sc0004359.1_g000036 Rmu_sc0006422.1_g000001 Rmu_sc0009445.1_g000018 Rmu_sc0017068.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097490 Rroxscaffold_2G00147030 Rroxscaffold_2G00147040 Rroxscaffold_2G00147050 Rroxscaffold_3G00247670
rosa_rugosa	Rorug02G0045400 Rorug02G0045400 Rorug02G0045600 Rorug02G0045700 Rorug02G0418000 Rorug07G0126300
rosa_samantha	Rh2AG093100 Rh2BG093400 Rh2BG093700 Rh2BG489500 Rh2CG095800 Rh2CG096000 Rh2DG092200 Rh2DG092400 Rh7AG259000 Rh7BG253300 Rh7CG276100 Rh7DG266600
rosa_wichuraiana	Rw0G003550 Rw0G003560 Rw2G038940 Rw7G022140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	222
AccB1I	GGYRCC	1 cut(s)	314
AccBSI	CCGCTC	1 cut(s)	197
AccI	GTMKAC	1 cut(s)	294
AciI	CCGC	1 cut(s)	195
AcsI	RAATTY	1 cut(s)	117
AcvI	CACGTG	1 cut(s)	242
AflIII	ACRYGT	1 cut(s)	241
AjnI	CCWGG	1 cut(s)	247
AluBI	AGCT	1 cut(s)	107
AluI	AGCT	1 cut(s)	107
Alw21I	GWGCWC	1 cut(s)	109
AoxI	GGCC	1 cut(s)	169
ApoI	RAATTY	1 cut(s)	117
AspLEI	GCGC	1 cut(s)	88
AsuC2I	CCSGG	1 cut(s)	165
AsuHPI	GGTGA	1 cut(s)	173
BanI	GGYRCC	1 cut(s)	314
BanII	GRGCYC	1 cut(s)	109
BauI	CACGAG	1 cut(s)	206
BbrPI	CACGTG	1 cut(s)	242
Bbv12I	GWGCWC	1 cut(s)	109
BccI	CCATC	1 cut(s)	43
BcgI	CGANNNNNNTGC	2 cut(s)	329, 363
BciT130I	CCWGG	1 cut(s)	249
BciVI	GTATCC	1 cut(s)	246
BcnI	CCSGG	1 cut(s)	165
BfuAI	ACCTGC	1 cut(s)	222
BfuI	GTATCC	1 cut(s)	246
Bme1390I	CCNGG	2 cut(s)	165, 249
BmiI	GGNNCC	1 cut(s)	316
BmrFI	CCNGG	2 cut(s)	165, 249
BplI	GAGNNNNNCTC	2 cut(s)	131, 163
BpuMI	CCSGG	1 cut(s)	165
BsaAI	YACGTR	1 cut(s)	242
BsaJI	CCNNGG	2 cut(s)	163, 248
BseBI	CCWGG	1 cut(s)	249
BseDI	CCNNGG	2 cut(s)	163, 248
BseMII	CTCAG	1 cut(s)	164
BshFI	GGCC	1 cut(s)	171
BshNI	GGYRCC	1 cut(s)	314
BsiHKAI	GWGCWC	1 cut(s)	109
BsiSI	CCGG	1 cut(s)	165
BsnI	GGCC	1 cut(s)	171
Bsp1286I	GDGCHC	1 cut(s)	109
Bsp143I	GATC	1 cut(s)	155
BspACI	CCGC	1 cut(s)	195
BspANI	GGCC	1 cut(s)	171
BspCNI	CTCAG	1 cut(s)	163
BspLI	GGNNCC	1 cut(s)	316
BspMI	ACCTGC	1 cut(s)	222
BspT107I	GGYRCC	1 cut(s)	314
BsrBI	CCGCTC	1 cut(s)	197
BssECI	CCNNGG	2 cut(s)	163, 248
BssMI	GATC	1 cut(s)	155
BssSI	CACGAG	1 cut(s)	206
Bst2BI	CACGAG	1 cut(s)	206
Bst2UI	CCWGG	1 cut(s)	249
Bst4CI	ACNGT	1 cut(s)	301
BstBAI	YACGTR	1 cut(s)	242
BstC8I	GCNNGC	2 cut(s)	84, 129
BstDEI	CTNAG	1 cut(s)	150
BstHHI	GCGC	1 cut(s)	88
BstKTI	GATC	1 cut(s)	158
BstMBI	GATC	1 cut(s)	155
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 314
BstNI	CCWGG	1 cut(s)	249
BstNSI	RCATGY	1 cut(s)	344
BstSCI	CCNGG	2 cut(s)	163, 247
BsuI	GTATCC	1 cut(s)	246
BsuRI	GGCC	1 cut(s)	171
BtgZI	GCGATG	1 cut(s)	146
BveI	ACCTGC	1 cut(s)	222
Cac8I	GCNNGC	2 cut(s)	84, 129
CfoI	GCGC	1 cut(s)	88
CviAII	CATG	1 cut(s)	341
CviJI	RGCY	4 cut(s)	107, 127, 171, 189
CviKI_1	RGCY	4 cut(s)	107, 127, 171, 189
DdeI	CTNAG	1 cut(s)	150
DpnI	GATC	1 cut(s)	157
DpnII	GATC	1 cut(s)	155
Ecl136II	GAGCTC	1 cut(s)	107
Eco24I	GRGCYC	1 cut(s)	109
Eco53kI	GAGCTC	1 cut(s)	107
Eco72I	CACGTG	1 cut(s)	242
EcoICRI	GAGCTC	1 cut(s)	107
EcoRII	CCWGG	1 cut(s)	247
EcoT38I	GRGCYC	1 cut(s)	109
FaeI	CATG	1 cut(s)	344
FaiI	YATR	7 cut(s)	222, 258, 342, 376, 378, 380, 382
FatI	CATG	1 cut(s)	340
FblI	GTMKAC	1 cut(s)	294
FriOI	GRGCYC	1 cut(s)	109
GlaI	GCGC	1 cut(s)	87
HaeIII	GGCC	1 cut(s)	171
HapII	CCGG	1 cut(s)	165
HhaI	GCGC	1 cut(s)	88
Hin1II	CATG	1 cut(s)	344
Hin6I	GCGC	1 cut(s)	86
HinP1I	GCGC	1 cut(s)	86
HincII	GTYRAC	2 cut(s)	295, 332
HindII	GTYRAC	2 cut(s)	295, 332
HinfI	GANTC	2 cut(s)	8, 24
HpaII	CCGG	1 cut(s)	165
HphI	GGTGA	1 cut(s)	173
Hpy166II	GTNNAC	3 cut(s)	295, 304, 332
Hpy188I	TCNGA	3 cut(s)	111, 153, 203
Hpy8I	GTNNAC	3 cut(s)	295, 304, 332
HpyAV	CCTTC	1 cut(s)	280
HpyCH4III	ACNGT	1 cut(s)	301
HpyCH4IV	ACGT	1 cut(s)	241
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 314
HpyF3I	CTNAG	1 cut(s)	150
HpySE526I	ACGT	1 cut(s)	241
Hsp92II	CATG	1 cut(s)	344
HspAI	GCGC	1 cut(s)	86
Kzo9I	GATC	1 cut(s)	155
LmnI	GCTCC	1 cut(s)	112
LpnPI	CCDG	7 cut(s)	58, 141, 178, 217, 234, 254, 261
MaeII	ACGT	1 cut(s)	241
MalI	GATC	1 cut(s)	157
MbiI	CCGCTC	1 cut(s)	197
MboI	GATC	1 cut(s)	155
MboII	GAAGA	1 cut(s)	3
MhlI	GDGCHC	1 cut(s)	109
MluCI	AATT	3 cut(s)	117, 213, 367
MlyI	GAGTC	1 cut(s)	18
MmeI	TCCRAC	1 cut(s)	226
MnlI	CCTC	2 cut(s)	268, 276
MseI	TTAA	1 cut(s)	212
MspI	CCGG	1 cut(s)	165
MspR9I	CCNGG	2 cut(s)	165, 249
MvaI	CCWGG	1 cut(s)	249
MwoI	GCNNNNNNNGC	2 cut(s)	92, 314
NciI	CCSGG	1 cut(s)	165
NdeII	GATC	1 cut(s)	155
NlaIII	CATG	1 cut(s)	344
NlaIV	GGNNCC	1 cut(s)	316
NspI	RCATGY	1 cut(s)	344
PfeI	GAWTC	1 cut(s)	8
PleI	GAGTC	1 cut(s)	18
PmaCI	CACGTG	1 cut(s)	242
PmlI	CACGTG	1 cut(s)	242
PpsI	GAGTC	1 cut(s)	18
Ppu21I	YACGTR	1 cut(s)	242
Psp124BI	GAGCTC	1 cut(s)	109
Psp6I	CCWGG	1 cut(s)	247
PspCI	CACGTG	1 cut(s)	242
PspGI	CCWGG	1 cut(s)	247
PspN4I	GGNNCC	1 cut(s)	316
SacI	GAGCTC	1 cut(s)	109
SalI	GTCGAC	1 cut(s)	293
SaqAI	TTAA	1 cut(s)	212
Sau3AI	GATC	1 cut(s)	155
SchI	GAGTC	1 cut(s)	18
ScrFI	CCNGG	2 cut(s)	165, 249
SduI	GDGCHC	1 cut(s)	109
SetI	ASST	9 cut(s)	101, 109, 236, 244, 273, 291, 316, 349, 367
Sse9I	AATT	3 cut(s)	117, 213, 367
SsiI	CCGC	1 cut(s)	195
SstI	GAGCTC	1 cut(s)	109
StyD4I	CCNGG	2 cut(s)	163, 247
TaaI	ACNGT	1 cut(s)	301
TaiI	ACGT	1 cut(s)	244
TaqI	TCGA	2 cut(s)	103, 294
TasI	AATT	3 cut(s)	117, 213, 367
TfiI	GAWTC	1 cut(s)	8
Tru1I	TTAA	1 cut(s)	212
Tru9I	TTAA	1 cut(s)	212
TspDTI	ATGAA	1 cut(s)	279
XapI	RAATTY	1 cut(s)	117
XceI	RCATGY	1 cut(s)	344
XmiI	GTMKAC	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.