RchiOBHm_Chr2g0129311

dnaJ homolog subfamily C member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002151
Physical Location & Seq
Reverse (-)
44980368 .. 44981513
1146 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 855 bp
ATGCAGATGGTAGCGAAGAGGGAGGTGGAGAGAAAGAGGGAGATAGAGGAGGAGAGGGAGAGGAGGAAGCGGTTGAAGAAAGAGAAGTTGGTGAAGGCTATAGAGTATGAGGAGCAGGAGTGGACGAAACCAGTTGAGAGGAAGAGAAAATATAGTAACAAGGAGGAGGAGGAGGAGGAAAAAGAGAGAGACGAATGGGAGTGTGTAGTTTGCAGGAAGGTGTACAGGAGTGAGCGGCAGTGCAGGAATCATGAGCAATCAAAAAAGCATCTCCGCATGGTTGCAAAGTTAATGGAGTTGTTGGAGGTTTTGGAGGAAAAACCAGATGAAGAAAAGGTTTTGGAGGAAGCAAAAAGGAATGAGGTGGTTGGAGGGAGTGATGGCGAAGAGGAGTTTCTTGATGGTGTTAATGATAATCAGAGGGAAAAGCTTAGTGAAACAGGTGAAGTTGATGATGAGGAAGTGGAGGAGGATGAGATGGGTGTTCTTGAAGCAATGGTGGCGAGGCGAAAGACAATGGAAGAGGTTGGTGAAGATATTCTTGAATCAATATTGGTTGAACCCATGGCGAGTAGTAGTCAAGAGGTGAAGAATGCTGACGAGGTGGCTATGGAGCATGACAAGCTAAAGAACGCCAATAAGAATGAAGGAGAAAGGAAACCGAGGAGAAGAAGAGCCAAGAGTACTAGAACTGACGAGCGTGATGGTTCAAATAATATGAAGGAATCCAAACCTGATTGTAGTGCAGAAAAAGGATATGATGAGGATCAGATCAATAAAAGGAAGGGTGGAGAGAGGAAAGAGAGGAGCGGTAAGAAGAGTAACGGTAAAGGAGATTTGAGTAGAAGAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ zf-C2H2_jaz

Protein Analysis

284

Amino Acids

33.56

Weight (kDa)

5.35

Isoelectric Point (pI)

62.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_jaz PF12171 66 - 90 4e-06 Zinc-finger double-stranded RNA-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 235, 810
AciI CCGC 4 cut(s) 70, 235, 274, 810
AclWI GGATC 1 cut(s) 774
AfaI GTAC 2 cut(s) 224, 685
AgsI TTSAA 5 cut(s) 76, 491, 545, 560, 711
AjuI GAANNNNNNNTTGG 2 cut(s) 71, 103
AluBI AGCT 2 cut(s) 430, 625
AluI AGCT 2 cut(s) 430, 625
Alw26I GTCTC 1 cut(s) 183
AlwI GGATC 1 cut(s) 774
Asp700I GAANNNNTTC 1 cut(s) 537
AsuHPI GGTGA 4 cut(s) 103, 455, 542, 598
BccI CCATC 4 cut(s) 374, 395, 472, 698
BcoDI GTCTC 1 cut(s) 183
BfaI CTAG 1 cut(s) 687
BfmI CTRYAG 1 cut(s) 99
BisI GCNGC 1 cut(s) 236
BlsI GCNGC 1 cut(s) 237
BmcAI AGTACT 1 cut(s) 685
BmsI GCATC 1 cut(s) 277
BsaBI GATNNNNATC 1 cut(s) 765
BsaJI CCNNGG 2 cut(s) 564, 662
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bse1I ACTGG 1 cut(s) 131
Bse3DI GCAATG 1 cut(s) 501
Bse8I GATNNNNATC 1 cut(s) 765
BseDI CCNNGG 2 cut(s) 564, 662
BseGI GGATG 1 cut(s) 478
BseJI GATNNNNATC 1 cut(s) 765
BseMI GCAATG 1 cut(s) 501
BseNI ACTGG 1 cut(s) 131
BsgI GTGCAG 2 cut(s) 262, 765
BsmAI GTCTC 1 cut(s) 183
BsmBI CGTCTC 1 cut(s) 183
BsmI GAATGC 1 cut(s) 598
Bsp1407I TGTACA 1 cut(s) 222
Bsp143I GATC 2 cut(s) 766, 771
Bsp19I CCATGG 1 cut(s) 564
BspACI CCGC 4 cut(s) 70, 235, 274, 810
BspHI TCATGA 1 cut(s) 250
BspPI GGATC 1 cut(s) 774
BspQI GCTCTTC 1 cut(s) 667
BsrBI CCGCTC 2 cut(s) 235, 810
BsrDI GCAATG 1 cut(s) 501
BsrGI TGTACA 1 cut(s) 222
BsrI ACTGG 1 cut(s) 131
BssECI CCNNGG 2 cut(s) 564, 662
BssMI GATC 2 cut(s) 766, 771
BssT1I CCWWGG 1 cut(s) 564
Bst4CI ACNGT 1 cut(s) 827
Bst6I CTCTTC 6 cut(s) 11, 137, 381, 516, 667, 812
BstAUI TGTACA 1 cut(s) 222
BstDEI CTNAG 1 cut(s) 431
BstDSI CCRYGG 1 cut(s) 564
BstF5I GGATG 1 cut(s) 478
BstKTI GATC 2 cut(s) 769, 774
BstMAI GTCTC 1 cut(s) 183
BstMBI GATC 2 cut(s) 766, 771
BstMWI GCNNNNNNNGC 2 cut(s) 500, 622
BstSFI CTRYAG 1 cut(s) 99
BtgI CCRYGG 1 cut(s) 564
BtsCI GGATG 1 cut(s) 478
BtsI GCAGTG 1 cut(s) 245
BtsIMutI CAGTG 1 cut(s) 245
CciI TCATGA 1 cut(s) 250
Csp6I GTAC 2 cut(s) 223, 684
CviAII CATG 4 cut(s) 251, 277, 565, 617
CviJI RGCY 5 cut(s) 98, 430, 608, 625, 677
CviKI_1 RGCY 5 cut(s) 98, 430, 608, 625, 677
CviQI GTAC 2 cut(s) 223, 684
DdeI CTNAG 1 cut(s) 431
DpnI GATC 2 cut(s) 768, 773
DpnII GATC 2 cut(s) 766, 771
Eam1104I CTCTTC 6 cut(s) 11, 137, 381, 516, 667, 812
EarI CTCTTC 6 cut(s) 11, 137, 381, 516, 667, 812
Eco130I CCWWGG 1 cut(s) 564
EcoT14I CCWWGG 1 cut(s) 564
ErhI CCWWGG 1 cut(s) 564
Esp3I CGTCTC 1 cut(s) 183
FaeI CATG 4 cut(s) 254, 280, 568, 620
FalI AAGNNNNNCTT 2 cut(s) 525, 557
FatI CATG 4 cut(s) 250, 276, 564, 616
Fnu4HI GCNGC 1 cut(s) 236
FokI GGATG 1 cut(s) 485
Fsp4HI GCNGC 1 cut(s) 236
FspBI CTAG 1 cut(s) 687
GluI GCNGC 1 cut(s) 236
Hin1II CATG 4 cut(s) 254, 280, 568, 620
HindIII AAGCTT 1 cut(s) 428
HinfI GANTC 3 cut(s) 247, 545, 725
HphI GGTGA 4 cut(s) 103, 455, 542, 598
Hpy166II GTNNAC 2 cut(s) 123, 223
Hpy188I TCNGA 2 cut(s) 420, 771
Hpy188III TCNNGA 5 cut(s) 251, 398, 488, 542, 581
Hpy8I GTNNAC 2 cut(s) 123, 223
HpyAV CCTTC 5 cut(s) 88, 211, 641, 715, 778
HpyCH4III ACNGT 1 cut(s) 827
HpyCH4V TGCA 5 cut(s) 4, 213, 243, 284, 746
HpyF10VI GCNNNNNNNGC 2 cut(s) 500, 622
HpyF3I CTNAG 1 cut(s) 431
Hsp92II CATG 4 cut(s) 254, 280, 568, 620
Kzo9I GATC 2 cut(s) 766, 771
LguI GCTCTTC 1 cut(s) 667
LmnI GCTCC 3 cut(s) 112, 613, 807
LpnPI CCDG 8 cut(s) 101, 144, 199, 211, 229, 336, 426, 747
LweI GCATC 1 cut(s) 277
MaeI CTAG 1 cut(s) 687
MaeIII GTNAC 2 cut(s) 155, 821
MalI GATC 2 cut(s) 768, 773
MbiI CCGCTC 2 cut(s) 235, 810
MboI GATC 2 cut(s) 766, 771
MmeI TCCRAC 2 cut(s) 282, 349
MroXI GAANNNNTTC 1 cut(s) 537
MseI TTAA 2 cut(s) 290, 408
Mva1269I GAATGC 1 cut(s) 598
MwoI GCNNNNNNNGC 2 cut(s) 500, 622
NcoI CCATGG 1 cut(s) 564
NdeII GATC 2 cut(s) 766, 771
NlaIII CATG 4 cut(s) 254, 280, 568, 620
PagI TCATGA 1 cut(s) 250
PciSI GCTCTTC 1 cut(s) 667
PctI GAATGC 1 cut(s) 598
PdmI GAANNNNTTC 1 cut(s) 537
PfeI GAWTC 3 cut(s) 247, 545, 725
PkrI GCNGC 1 cut(s) 237
RsaI GTAC 2 cut(s) 224, 685
RsaNI GTAC 2 cut(s) 223, 684
SapI GCTCTTC 1 cut(s) 667
SaqAI TTAA 2 cut(s) 290, 408
SatI GCNGC 1 cut(s) 236
Sau3AI GATC 2 cut(s) 766, 771
ScaI AGTACT 1 cut(s) 685
SfaNI GCATC 1 cut(s) 277
SfcI CTRYAG 1 cut(s) 99
SsiI CCGC 4 cut(s) 70, 235, 274, 810
SspI AATATT 1 cut(s) 552
SspMI CTAG 1 cut(s) 687
StyI CCWWGG 1 cut(s) 564
TaaI ACNGT 1 cut(s) 827
TatI WGTACW 2 cut(s) 222, 683
TauI GCSGC 1 cut(s) 238
TfiI GAWTC 3 cut(s) 247, 545, 725
Tru1I TTAA 2 cut(s) 290, 408
Tru9I TTAA 2 cut(s) 290, 408
TscAI CASTG 1 cut(s) 245
TspDTI ATGAA 3 cut(s) 342, 660, 734
TspRI CASTG 1 cut(s) 245
XmnI GAANNNNTTC 1 cut(s) 537
XspI CTAG 1 cut(s) 687
ZrmI AGTACT 1 cut(s) 685
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.