Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000823

Physical Location & Seq

Genomic Coordinates Forward (+)

5558187 .. 5558699

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGAAGTTTTTTTGTGCTGATTTGGTTCGCTGTGCCAAGGACAGGAGGCTCAGGGTGAAGGGACCAGTGAGGATGCCTACCAAGATTCTGCACATTACCACTAGGAAGTCACCCTGTGGAGAAGGTACCAACACATGGGACAGATTTGAGTTGTATGGGCATAAGCGTGTTATTGATCTCTTCAGCTCTCCTGATGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 ko03010 map00520 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

66

Amino Acids

7.69

Weight (kDa)

9.94

Isoelectric Point (pI)

46.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S10	PF00338	2 - 62	4.7e-17	Ribosomal protein S10p/S20e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45030 AT3G47370 AT3G47370 AT3G47370 AT5G62300 AT5G62300
fragaria_vesca	FvH4_4g30020 FvH4_7g28020 FvH4_7g28020 FvH4_7g28020
malus_domestica	MD01G1184700.v1.1 MD07G1256900.v1.1
prunus_persica	Prupe.1G120500_v2.0.a1 Prupe.1G287000_v2.0.a1 Prupe.2G281000_v2.0.a1 Prupe.2G281100_v2.0.a1 Prupe.5G012000_v2.0.a1 Prupe.5G059500_v2.0.a1
pyrus_communis	pycom01g19640 pycom07g22980
rosa_chinensis	RchiOBHm_Chr1g0318011 RchiOBHm_Chr1g0324851 RchiOBHm_Chr1g0350101 RchiOBHm_Chr1g0374951 RchiOBHm_Chr4g0396241 RchiOBHm_Chr4g0438311
rosa_laevigata	RLG00000006371 RLG00000010263 RLG00000018308 RLG00000026704
rosa_multiflora	Rmu_sc0001225.1_g000007 Rmu_sc0002962.1_g000010 Rmu_sc0011129.1_g000002
rosa_roxburghii	Rroxscaffold_2G00109290 Rroxscaffold_2G00154010 Rroxscaffold_4G00283150 Rroxscaffold_4G00305070 Rroxscaffold_5G00379400
rosa_rugosa	Rorug01G0386300 Rorug03G0329000 Rorug03G0329100 Rorug03G0329200 Rorug03G0329200 Rorug03G0329300 Rorug03G0329400 Rorug03G0329500 Rorug04G0308900 Rorug06G0060300
rosa_samantha	Rh1BG361500 Rh1CG375100 Rh1CG421700 Rh1DG392500 Rh2AG274500 Rh2AG496700 Rh2CG292500 Rh2CG482700 Rh4AG360000 Rh4BG371000 Rh4DG365900 Rh5AG175200 Rh5CG471800
rosa_wichuraiana	Rw0G006460 Rw0G016400 Rw1G035270 Rw5G003840 Rw5G025040 Rw6G009770 Rw6G017420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	125
AccB1I	GGYRCC	1 cut(s)	125
AccB7I	CCANNNNNTGG	1 cut(s)	135
AcuI	CTGAAG	1 cut(s)	166
AdeI	CACNNNGTG	1 cut(s)	116
AfaI	GTAC	1 cut(s)	127
AfiI	CCNNNNNNNGG	2 cut(s)	42, 135
AluBI	AGCT	1 cut(s)	186
AluI	AGCT	1 cut(s)	186
Asp718I	GGTACC	1 cut(s)	125
AspS9I	GGNCC	1 cut(s)	62
AsuHPI	GGTGA	2 cut(s)	67, 102
AvaII	GGWCC	1 cut(s)	62
BanI	GGYRCC	1 cut(s)	125
BfaI	CTAG	1 cut(s)	102
Bme18I	GGWCC	1 cut(s)	62
BmgT120I	GGNCC	1 cut(s)	62
BmiI	GGNNCC	2 cut(s)	63, 127
BmsI	GCATC	1 cut(s)	63
Bpu10I	CCTNAGC	1 cut(s)	50
BsaJI	CCNNGG	1 cut(s)	36
Bsc4I	CCNNNNNNNGG	2 cut(s)	42, 135
Bse1I	ACTGG	1 cut(s)	65
BseDI	CCNNGG	1 cut(s)	36
BseGI	GGATG	1 cut(s)	78
BseLI	CCNNNNNNNGG	2 cut(s)	42, 135
BseMII	CTCAG	1 cut(s)	64
BseNI	ACTGG	1 cut(s)	65
BsgI	GTGCAG	1 cut(s)	74
BshNI	GGYRCC	1 cut(s)	125
BslFI	GGGAC	2 cut(s)	75, 152
BslI	CCNNNNNNNGG	2 cut(s)	42, 135
BsmFI	GGGAC	2 cut(s)	75, 152
Bsp143I	GATC	1 cut(s)	175
BspCNI	CTCAG	1 cut(s)	63
BspLI	GGNNCC	2 cut(s)	63, 127
BspT107I	GGYRCC	1 cut(s)	125
BsrI	ACTGG	1 cut(s)	65
BssECI	CCNNGG	1 cut(s)	36
BssMI	GATC	1 cut(s)	175
BssT1I	CCWWGG	1 cut(s)	36
Bst6I	CTCTTC	1 cut(s)	185
BstDEI	CTNAG	1 cut(s)	50
BstF5I	GGATG	1 cut(s)	78
BstKTI	GATC	1 cut(s)	178
BstMBI	GATC	1 cut(s)	175
BtsCI	GGATG	1 cut(s)	78
BtsIMutI	CAGTG	1 cut(s)	72
Cfr13I	GGNCC	1 cut(s)	62
Csp6I	GTAC	1 cut(s)	126
CviAII	CATG	1 cut(s)	135
CviJI	RGCY	2 cut(s)	49, 186
CviKI_1	RGCY	2 cut(s)	49, 186
CviQI	GTAC	1 cut(s)	126
DdeI	CTNAG	1 cut(s)	50
DpnI	GATC	1 cut(s)	177
DpnII	GATC	1 cut(s)	175
DraIII	CACNNNGTG	1 cut(s)	116
Eam1104I	CTCTTC	1 cut(s)	185
EarI	CTCTTC	1 cut(s)	185
Eco130I	CCWWGG	1 cut(s)	36
Eco47I	GGWCC	1 cut(s)	62
Eco57I	CTGAAG	1 cut(s)	166
EcoT14I	CCWWGG	1 cut(s)	36
ErhI	CCWWGG	1 cut(s)	36
FaeI	CATG	1 cut(s)	138
FaiI	YATR	3 cut(s)	136, 156, 162
FaqI	GGGAC	2 cut(s)	75, 152
FatI	CATG	1 cut(s)	134
FokI	GGATG	1 cut(s)	85
FspBI	CTAG	1 cut(s)	102
Hin1II	CATG	1 cut(s)	138
HinfI	GANTC	1 cut(s)	85
HphI	GGTGA	2 cut(s)	67, 102
Hpy188III	TCNNGA	1 cut(s)	191
HpyAV	CCTTC	2 cut(s)	52, 116
HpyCH4V	TGCA	1 cut(s)	91
HpyF3I	CTNAG	1 cut(s)	50
Hsp92II	CATG	1 cut(s)	138
KpnI	GGTACC	1 cut(s)	129
Kzo9I	GATC	1 cut(s)	175
LpnPI	CCDG	4 cut(s)	28, 37, 78, 127
LweI	GCATC	1 cut(s)	63
MaeI	CTAG	1 cut(s)	102
MaeIII	GTNAC	1 cut(s)	108
MalI	GATC	1 cut(s)	177
MboI	GATC	1 cut(s)	175
MboII	GAAGA	1 cut(s)	172
MnlI	CCTC	2 cut(s)	39, 63
MslI	CAYNNNNRTG	1 cut(s)	165
NdeII	GATC	1 cut(s)	175
NlaIII	CATG	1 cut(s)	138
NlaIV	GGNNCC	2 cut(s)	63, 127
NmuCI	GTSAC	1 cut(s)	108
PfeI	GAWTC	1 cut(s)	85
PflMI	CCANNNNNTGG	1 cut(s)	135
PspN4I	GGNNCC	2 cut(s)	63, 127
PspPI	GGNCC	1 cut(s)	62
RsaI	GTAC	1 cut(s)	127
RsaNI	GTAC	1 cut(s)	126
RseI	CAYNNNNRTG	1 cut(s)	165
Sau3AI	GATC	1 cut(s)	175
Sau96I	GGNCC	1 cut(s)	62
SetI	ASST	2 cut(s)	127, 188
SfaNI	GCATC	1 cut(s)	63
SgeI	CNNG	9 cut(s)	49, 55, 64, 77, 94, 114, 126, 147, 179
SinI	GGWCC	1 cut(s)	62
SmiMI	CAYNNNNRTG	1 cut(s)	165
SspMI	CTAG	1 cut(s)	102
StyI	CCWWGG	1 cut(s)	36
TfiI	GAWTC	1 cut(s)	85
TscAI	CASTG	1 cut(s)	72
TseFI	GTSAC	1 cut(s)	108
Tsp45I	GTSAC	1 cut(s)	108
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	72
Van91I	CCANNNNNTGG	1 cut(s)	135
VpaK11BI	GGWCC	1 cut(s)	62
XspI	CTAG	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.