Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_chinensis

Chromosome

Unknown

Orthogroup ID

OG0000741

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGCTCCTAGAACCCCCGAGCCTTGGAAATCTGGCCTCCTTGACTGCTTCTCCGATCCCAAAAGCTGTAATAAACTCGCGCCTGCTCCGGTCCATCTTCATTACTAATCTGCACGAGCAAATTAACTCGAAACTAATTTTCTGTATGGATACAGGTTGCTTAACATATTGGTGTCCATGCATCACTTTTGGCCGGATTGCTGAGATTGTGGATAAAGGCTCTCCATCTTGTGCTGCAAGTGGAGCAATGTATACGTTCATAGCTATCGTGATTGGTATTCCTTGCTGGTATTCATGCTCCTACCGCATGAAGATGAGGGAGCAGTACGCTTTGGACGGGAACCGTTGTAGTGATTTTTTGATTCACTGCTTCTGTGAGAACTGCGCCTTGTGCCAGGAGTATCGTGAGCTCCAAAGTCGCGGTTTTAACATGGCCATCGGATGGGATGGAAATATGGATGCAAGGAACCGCGAAGTGGCAATGGCCCCAGTGCCTCCGATGGTGGAGGAAGGCATGAAACGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

174

Amino Acids

19.5

Weight (kDa)

6.69

Isoelectric Point (pI)

46.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLAC8	PF04749	46 - 136	1.5e-26	PLAC8 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14870 AT1G14870 AT1G14880 AT5G35525
fragaria_vesca	FvH4_4g33890 FvH4_4g33900 FvH4_4g33900 FvH4_4g33930 FvH4_4g34200
malus_domestica	MD16G1021300.v1.1 MD16G1021400.v1.1
prunus_persica	Prupe.1G331100_v2.0.a1
pyrus_communis	pycom13g01870 pycom16g01900 pycom16g01910
rosa_chinensis	RchiOBHm_Chr0c23g0500741 RchiOBHm_Chr4g0409091 RchiOBHm_Chr4g0443411 RchiOBHm_Chr4g0443421 RchiOBHm_Chr4g0443431 RchiOBHm_Chr4g0443441 RchiOBHm_Chr4g0443451 RchiOBHm_Chr4g0443461 RchiOBHm_Chr5g0070111
rosa_laevigata	RLG00000005927 RLG00000005928 RLG00000005929 RLG00000005930 RLG00000019779
rosa_multiflora	Rmu_co8363857.1_g000001 Rmu_co8469801.1_g000001 Rmu_sc0001669.1_g000019 Rmu_sc0004836.1_g000022 Rmu_sc0004849.1_g000015 Rmu_sc0009670.1_g000002 Rmu_ssc0000122.1_g000016 Rmu_ssc0000122.1_g000017
rosa_roxburghii	Rroxscaffold_3G00257420 Rroxscaffold_5G00383970 Rroxscaffold_5G00383980 Rroxscaffold_5G00384010
rosa_rugosa	Rorug04G0346000 Rorug04G0346100 Rorug04G0346200 Rorug04G0346400 Rorug05G0555800
rosa_samantha	Rh4AG154100 Rh4AG401500 Rh4AG401600 Rh4AG401700 Rh4AG401800 Rh4AG401900 Rh4BG412900 Rh4BG413100 Rh4BG413200 Rh4BG413300 Rh4CG162800 Rh4CG428600 Rh4CG428700 Rh4CG428800 Rh4CG428900 Rh4CG429000 Rh4DG408700 Rh4DG408800 Rh4DG408900 Rh4DG409000
rosa_wichuraiana	Rw4G004920 Rw4G034620 Rw4G034630 Rw4G034640 Rw4G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	441
AccI	GTMKAC	1 cut(s)	251
AccII	CGCG	3 cut(s)	79, 420, 471
AciI	CCGC	3 cut(s)	304, 420, 469
AclWI	GGATC	1 cut(s)	49
AcoI	YGGCCR	2 cut(s)	190, 432
AfaI	GTAC	1 cut(s)	326
AfiI	CCNNNNNNNGG	3 cut(s)	23, 441, 475
AjnI	CCWGG	1 cut(s)	393
AluBI	AGCT	3 cut(s)	65, 263, 409
AluI	AGCT	3 cut(s)	65, 263, 409
Alw21I	GWGCWC	1 cut(s)	411
AlwI	GGATC	1 cut(s)	49
Ama87I	CYCGRG	1 cut(s)	16
AoxI	GGCC	4 cut(s)	33, 190, 432, 483
ApeKI	GCWGC	1 cut(s)	233
AspLEI	GCGC	2 cut(s)	81, 386
AspS9I	GGNCC	2 cut(s)	90, 484
AvaI	CYCGRG	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	90
BalI	TGGCCA	1 cut(s)	434
BanII	GRGCYC	1 cut(s)	411
BauI	CACGAG	1 cut(s)	113
Bbv12I	GWGCWC	1 cut(s)	411
BbvI	GCAGC	1 cut(s)	220
BccI	CCATC	6 cut(s)	101, 232, 435, 440, 443, 493
BciT130I	CCWGG	1 cut(s)	395
BciVI	GTATCC	1 cut(s)	142
BfaI	CTAG	1 cut(s)	8
BfuI	GTATCC	1 cut(s)	142
BisI	GCNGC	1 cut(s)	234
BlsI	GCNGC	1 cut(s)	235
Bme1390I	CCNGG	1 cut(s)	395
Bme18I	GGWCC	1 cut(s)	90
BmeT110I	CYCGRG	1 cut(s)	16
BmgT120I	GGNCC	2 cut(s)	90, 484
BmiI	GGNNCC	3 cut(s)	341, 467, 486
BmrFI	CCNGG	1 cut(s)	395
BmrI	ACTGGG	1 cut(s)	482
BmsI	GCATC	2 cut(s)	189, 448
BmuI	ACTGGG	1 cut(s)	482
BsaJI	CCNNGG	1 cut(s)	22
BsaWI	WCCGGW	1 cut(s)	87
BsaXI	ACNNNNNCTCC	2 cut(s)	34, 64
Bsc4I	CCNNNNNNNGG	3 cut(s)	23, 441, 475
Bse1I	ACTGG	1 cut(s)	488
Bse3DI	GCAATG	2 cut(s)	252, 486
BseBI	CCWGG	1 cut(s)	395
BseDI	CCNNGG	1 cut(s)	22
BseGI	GGATG	3 cut(s)	446, 451, 463
BseLI	CCNNNNNNNGG	3 cut(s)	23, 441, 475
BseMI	GCAATG	2 cut(s)	252, 486
BseMII	CTCAG	1 cut(s)	192
BseNI	ACTGG	1 cut(s)	488
BseXI	GCAGC	1 cut(s)	220
BsgI	GTGCAG	1 cut(s)	95
Bsh1236I	CGCG	3 cut(s)	79, 420, 471
BshFI	GGCC	4 cut(s)	35, 192, 434, 485
BsiHKAI	GWGCWC	1 cut(s)	411
BsiHKCI	CYCGRG	1 cut(s)	16
BsiSI	CCGG	2 cut(s)	88, 193
BslI	CCNNNNNNNGG	3 cut(s)	23, 441, 475
BsnI	GGCC	4 cut(s)	35, 192, 434, 485
BsoBI	CYCGRG	1 cut(s)	16
Bsp1286I	GDGCHC	1 cut(s)	411
Bsp143I	GATC	1 cut(s)	54
BspACI	CCGC	3 cut(s)	304, 420, 469
BspANI	GGCC	4 cut(s)	35, 192, 434, 485
BspCNI	CTCAG	1 cut(s)	193
BspFNI	CGCG	3 cut(s)	79, 420, 471
BspLI	GGNNCC	3 cut(s)	341, 467, 486
BspPI	GGATC	1 cut(s)	49
BsrDI	GCAATG	2 cut(s)	252, 486
BsrI	ACTGG	1 cut(s)	488
BssECI	CCNNGG	1 cut(s)	22
BssMI	GATC	1 cut(s)	54
BssNAI	GTATAC	1 cut(s)	252
BssSI	CACGAG	1 cut(s)	113
BssT1I	CCWWGG	1 cut(s)	22
Bst1107I	GTATAC	1 cut(s)	252
Bst2BI	CACGAG	1 cut(s)	113
Bst2UI	CCWGG	1 cut(s)	395
Bst4CI	ACNGT	1 cut(s)	344
BstC8I	GCNNGC	1 cut(s)	83
BstDEI	CTNAG	1 cut(s)	201
BstF5I	GGATG	3 cut(s)	446, 451, 463
BstFNI	CGCG	3 cut(s)	79, 420, 471
BstHHI	GCGC	2 cut(s)	81, 386
BstKTI	GATC	1 cut(s)	57
BstMBI	GATC	1 cut(s)	54
BstMWI	GCNNNNNNNGC	3 cut(s)	242, 303, 390
BstNI	CCWGG	1 cut(s)	395
BstSCI	CCNGG	1 cut(s)	393
BstUI	CGCG	3 cut(s)	79, 420, 471
BstV1I	GCAGC	1 cut(s)	220
BstZ17I	GTATAC	1 cut(s)	252
BsuI	GTATCC	1 cut(s)	142
BsuRI	GGCC	4 cut(s)	35, 192, 434, 485
BtsCI	GGATG	3 cut(s)	446, 451, 463
BtsI	GCAGTG	1 cut(s)	364
BtsIMutI	CAGTG	2 cut(s)	364, 495
Cac8I	GCNNGC	1 cut(s)	83
CfoI	GCGC	2 cut(s)	81, 386
Cfr13I	GGNCC	2 cut(s)	90, 484
Csp6I	GTAC	1 cut(s)	325
CviAII	CATG	5 cut(s)	177, 294, 307, 430, 514
CviJI	RGCY	9 cut(s)	21, 35, 65, 192, 219, 263, 409, 434, 485
CviKI_1	RGCY	9 cut(s)	21, 35, 65, 192, 219, 263, 409, 434, 485
CviQI	GTAC	1 cut(s)	325
DdeI	CTNAG	1 cut(s)	201
DpnI	GATC	1 cut(s)	56
DpnII	GATC	1 cut(s)	54
EaeI	YGGCCR	2 cut(s)	190, 432
Ecl136II	GAGCTC	1 cut(s)	409
Eco130I	CCWWGG	1 cut(s)	22
Eco24I	GRGCYC	1 cut(s)	411
Eco47I	GGWCC	1 cut(s)	90
Eco53kI	GAGCTC	1 cut(s)	409
Eco88I	CYCGRG	1 cut(s)	16
EcoICRI	GAGCTC	1 cut(s)	409
EcoRII	CCWGG	1 cut(s)	393
EcoT14I	CCWWGG	1 cut(s)	22
EcoT22I	ATGCAT	1 cut(s)	182
EcoT38I	GRGCYC	1 cut(s)	411
ErhI	CCWWGG	1 cut(s)	22
FaeI	CATG	5 cut(s)	180, 297, 310, 433, 517
FatI	CATG	5 cut(s)	176, 293, 306, 429, 513
FblI	GTMKAC	1 cut(s)	251
Fnu4HI	GCNGC	1 cut(s)	234
FokI	GGATG	3 cut(s)	453, 458, 470
FriOI	GRGCYC	1 cut(s)	411
Fsp4HI	GCNGC	1 cut(s)	234
FspBI	CTAG	1 cut(s)	8
GlaI	GCGC	2 cut(s)	80, 385
GluI	GCNGC	1 cut(s)	234
HaeIII	GGCC	4 cut(s)	35, 192, 434, 485
HapII	CCGG	2 cut(s)	88, 193
HhaI	GCGC	2 cut(s)	81, 386
Hin1II	CATG	5 cut(s)	180, 297, 310, 433, 517
Hin6I	GCGC	2 cut(s)	79, 384
HinP1I	GCGC	2 cut(s)	79, 384
HinfI	GANTC	1 cut(s)	361
HpaII	CCGG	2 cut(s)	88, 193
Hpy166II	GTNNAC	1 cut(s)	252
Hpy188I	TCNGA	3 cut(s)	54, 440, 498
Hpy188III	TCNNGA	2 cut(s)	268, 404
Hpy8I	GTNNAC	1 cut(s)	252
HpyAV	CCTTC	1 cut(s)	503
HpyCH4III	ACNGT	1 cut(s)	344
HpyCH4IV	ACGT	1 cut(s)	254
HpyCH4V	TGCA	4 cut(s)	112, 180, 236, 461
HpyF10VI	GCNNNNNNNGC	3 cut(s)	242, 303, 390
HpyF3I	CTNAG	1 cut(s)	201
HpySE526I	ACGT	1 cut(s)	254
Hsp92II	CATG	5 cut(s)	180, 297, 310, 433, 517
HspAI	GCGC	2 cut(s)	79, 384
Kzo9I	GATC	1 cut(s)	54
LmnI	GCTCC	6 cut(s)	9, 90, 242, 302, 319, 414
LpnPI	CCDG	9 cut(s)	17, 95, 101, 138, 206, 271, 380, 407, 501
Lsp1109I	GCAGC	1 cut(s)	220
LweI	GCATC	2 cut(s)	189, 448
MaeI	CTAG	1 cut(s)	8
MaeII	ACGT	1 cut(s)	254
MalI	GATC	1 cut(s)	56
MboI	GATC	1 cut(s)	54
MboII	GAAGA	2 cut(s)	88, 322
MhlI	GDGCHC	1 cut(s)	411
MlsI	TGGCCA	1 cut(s)	434
MluCI	AATT	2 cut(s)	120, 135
MluNI	TGGCCA	1 cut(s)	434
MnlI	CCTC	4 cut(s)	46, 309, 499, 504
Mox20I	TGGCCA	1 cut(s)	434
Mph1103I	ATGCAT	1 cut(s)	182
MscI	TGGCCA	1 cut(s)	434
MseI	TTAA	3 cut(s)	123, 161, 426
MslI	CAYNNNNRTG	2 cut(s)	169, 311
Msp20I	TGGCCA	1 cut(s)	434
MspI	CCGG	2 cut(s)	88, 193
MspR9I	CCNGG	1 cut(s)	395
MvaI	CCWGG	1 cut(s)	395
MvnI	CGCG	3 cut(s)	79, 420, 471
MwoI	GCNNNNNNNGC	3 cut(s)	242, 303, 390
NdeII	GATC	1 cut(s)	54
NlaIII	CATG	5 cut(s)	180, 297, 310, 433, 517
NlaIV	GGNNCC	3 cut(s)	341, 467, 486
NsiI	ATGCAT	1 cut(s)	182
PfeI	GAWTC	1 cut(s)	361
PflMI	CCANNNNNTGG	1 cut(s)	441
PkrI	GCNGC	1 cut(s)	235
Psp124BI	GAGCTC	1 cut(s)	411
Psp6I	CCWGG	1 cut(s)	393
PspGI	CCWGG	1 cut(s)	393
PspN4I	GGNNCC	3 cut(s)	341, 467, 486
PspPI	GGNCC	2 cut(s)	90, 484
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
RseI	CAYNNNNRTG	2 cut(s)	169, 311
SacI	GAGCTC	1 cut(s)	411
SaqAI	TTAA	3 cut(s)	123, 161, 426
SatI	GCNGC	1 cut(s)	234
Sau3AI	GATC	1 cut(s)	54
Sau96I	GGNCC	2 cut(s)	90, 484
ScrFI	CCNGG	1 cut(s)	395
SduI	GDGCHC	1 cut(s)	411
SetI	ASST	5 cut(s)	67, 157, 257, 265, 411
SfaNI	GCATC	2 cut(s)	189, 448
SinI	GGWCC	1 cut(s)	90
SmiMI	CAYNNNNRTG	2 cut(s)	169, 311
Sse9I	AATT	2 cut(s)	120, 135
SsiI	CCGC	3 cut(s)	304, 420, 469
SspMI	CTAG	1 cut(s)	8
SstI	GAGCTC	1 cut(s)	411
StyD4I	CCNGG	1 cut(s)	393
StyI	CCWWGG	1 cut(s)	22
TaaI	ACNGT	1 cut(s)	344
TaiI	ACGT	1 cut(s)	257
TaqI	TCGA	1 cut(s)	128
TasI	AATT	2 cut(s)	120, 135
TfiI	GAWTC	1 cut(s)	361
Tru1I	TTAA	3 cut(s)	123, 161, 426
Tru9I	TTAA	3 cut(s)	123, 161, 426
TscAI	CASTG	2 cut(s)	371, 495
TseI	GCWGC	1 cut(s)	233
TspDTI	ATGAA	4 cut(s)	88, 247, 282, 323
TspRI	CASTG	2 cut(s)	371, 495
Van91I	CCANNNNNTGG	1 cut(s)	441
VpaK11BI	GGWCC	1 cut(s)	90
XmiI	GTMKAC	1 cut(s)	251
XspI	CTAG	1 cut(s)	8
Zsp2I	ATGCAT	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.