Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002407

Physical Location & Seq

Genomic Coordinates Forward (+)

24315894 .. 24316500

Gene Structure 607 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002011

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGACGACCGCCGCCGGAGCTGCTATGATTCTACCAACAACAGAGGGAGTTTCCCAGACCAAAAATTCTGAAGCATGCCAGACCGGAGCAATGTGCAGCTATAAACTTAGTCCGCTTCGACCCGTAATGCTCGACCCGAATTTGACCTTGGTGGAACCCCAGACAGGCCAGCGATGCTGGCCTGGACTTATGCAAGACCTCACACAGTCCTTTAGGGTTTTCCATGGTCACAATCGTATCAAACGGCTTCTAATCATTGAAATTGAAGACGACGATCTTGTGAAGAAGAACAACTACGATTCGGTTGCGGCGGAGCCTAACAGACTTGACCTCGGACCCGAACGAGCACTCACTAACGCAGCGGGACTGGCGATCTTCATAGATCATGACCTTGTTGGGTGGGCAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

137

Amino Acids

14.95

Weight (kDa)

5.13

Isoelectric Point (pI)

47.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002407)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0357141
rosa_laevigata	RLG00000002011 RLG00000003375 RLG00000004903 RLG00000007386 RLG00000009065 RLG00000009288 RLG00000013868 RLG00000014254 RLG00000014965 RLG00000015454 RLG00000028014 RLG00000029416 RLG00000032950 RLG00000036480 RLG00000037033
rosa_multiflora	Rmu_sc0000227.1_g000012 Rmu_ssc0000361.1_g000010 Rmu_ssc0000420.1_g000021
rosa_roxburghii	Rroxscaffold_1G00008600 Rroxscaffold_1G00017770 Rroxscaffold_2G00103190 Rroxscaffold_7G00160850
rosa_rugosa	Rorug01G0134400.1 Rorug02G0253700 Rorug06G0012400
rosa_samantha	Rh1CG204200 Rh2AG323900 Rh2AG477000 Rh2BG488800 Rh2CG462700 Rh2DG497800 Rh3AG144500 Rh3BG166900 Rh4BG074700 Rh4BG080300 Rh5CG311500 Rh6BG200700 Rh6CG201900 Rh7AG241500 Rh7CG256100
rosa_wichuraiana	Rw6G017170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	9, 12, 113, 308, 311, 362
AcsI	RAATTY	2 cut(s)	64, 139
AcuI	CTGAAG	1 cut(s)	90
AfiI	CCNNNNNNNGG	1 cut(s)	164
AgsI	TTSAA	2 cut(s)	260, 266
AjnI	CCWGG	1 cut(s)	181
AjuI	GAANNNNNNNTTGG	2 cut(s)	131, 163
AluBI	AGCT	2 cut(s)	20, 99
AluI	AGCT	2 cut(s)	20, 99
Alw21I	GWGCWC	1 cut(s)	349
AoxI	GGCC	2 cut(s)	166, 179
ApeKI	GCWGC	3 cut(s)	20, 96, 359
ApoI	RAATTY	2 cut(s)	64, 139
AspS9I	GGNCC	1 cut(s)	335
AvaII	GGWCC	1 cut(s)	335
BaeI	ACNNNNGTAYC	2 cut(s)	220, 253
BarI	GAAGNNNNNNTAC	2 cut(s)	278, 310
BbsI	GAAGAC	1 cut(s)	273
Bbv12I	GWGCWC	1 cut(s)	349
BbvI	GCAGC	3 cut(s)	7, 108, 371
BceAI	ACGGC	1 cut(s)	260
BcgI	CGANNNNNNTGC	2 cut(s)	287, 321
BciT130I	CCWGG	1 cut(s)	183
BisI	GCNGC	5 cut(s)	12, 21, 97, 309, 360
BlsI	GCNGC	5 cut(s)	13, 22, 98, 310, 361
Bme1390I	CCNGG	1 cut(s)	183
Bme18I	GGWCC	1 cut(s)	335
BmgT120I	GGNCC	1 cut(s)	335
BmiI	GGNNCC	3 cut(s)	156, 315, 337
BmrFI	CCNGG	1 cut(s)	183
BmsI	GCATC	1 cut(s)	164
BpiI	GAAGAC	1 cut(s)	273
BsaJI	CCNNGG	3 cut(s)	147, 223, 331
BsaWI	WCCGGW	1 cut(s)	83
Bsc4I	CCNNNNNNNGG	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	372
Bse3DI	GCAATG	1 cut(s)	96
BseBI	CCWGG	1 cut(s)	183
BseDI	CCNNGG	3 cut(s)	147, 223, 331
BseLI	CCNNNNNNNGG	1 cut(s)	164
BseMI	GCAATG	1 cut(s)	96
BseNI	ACTGG	1 cut(s)	372
BseXI	GCAGC	3 cut(s)	7, 108, 371
BsgI	GTGCAG	1 cut(s)	115
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	2 cut(s)	168, 181
BsiEI	CGRYCG	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	349
BsiSI	CCGG	2 cut(s)	15, 84
BslFI	GGGAC	1 cut(s)	378
BslI	CCNNNNNNNGG	1 cut(s)	164
BsmFI	GGGAC	1 cut(s)	378
BsnI	GGCC	2 cut(s)	168, 181
Bsp1286I	GDGCHC	1 cut(s)	349
Bsp143I	GATC	3 cut(s)	274, 372, 382
Bsp19I	CCATGG	1 cut(s)	223
BspACI	CCGC	6 cut(s)	9, 12, 113, 308, 311, 362
BspANI	GGCC	2 cut(s)	168, 181
BspHI	TCATGA	1 cut(s)	385
BspLI	GGNNCC	3 cut(s)	156, 315, 337
BsrDI	GCAATG	1 cut(s)	96
BsrI	ACTGG	1 cut(s)	372
BssECI	CCNNGG	3 cut(s)	147, 223, 331
BssMI	GATC	3 cut(s)	274, 372, 382
BssT1I	CCWWGG	2 cut(s)	147, 223
Bst2UI	CCWGG	1 cut(s)	183
Bst4CI	ACNGT	1 cut(s)	207
BstC8I	GCNNGC	3 cut(s)	76, 170, 179
BstDEI	CTNAG	1 cut(s)	107
BstDSI	CCRYGG	1 cut(s)	223
BstKTI	GATC	3 cut(s)	277, 375, 385
BstMBI	GATC	3 cut(s)	274, 372, 382
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	5 cut(s)	17, 20, 174, 178, 368
BstNI	CCWGG	1 cut(s)	183
BstNSI	RCATGY	1 cut(s)	78
BstSCI	CCNGG	1 cut(s)	181
BstV1I	GCAGC	3 cut(s)	7, 108, 371
BstV2I	GAAGAC	1 cut(s)	273
BsuRI	GGCC	2 cut(s)	168, 181
BtgI	CCRYGG	1 cut(s)	223
BtgZI	GCGATG	1 cut(s)	187
Cac8I	GCNNGC	3 cut(s)	76, 170, 179
CciI	TCATGA	1 cut(s)	385
Cfr13I	GGNCC	1 cut(s)	335
CviAII	CATG	3 cut(s)	75, 224, 386
CviJI	RGCY	6 cut(s)	20, 99, 168, 181, 247, 316
CviKI_1	RGCY	6 cut(s)	20, 99, 168, 181, 247, 316
DdeI	CTNAG	1 cut(s)	107
DpnI	GATC	3 cut(s)	276, 374, 384
DpnII	GATC	3 cut(s)	274, 372, 382
EciI	GGCGGA	1 cut(s)	326
Eco130I	CCWWGG	2 cut(s)	147, 223
Eco47I	GGWCC	1 cut(s)	335
Eco57I	CTGAAG	1 cut(s)	90
EcoRII	CCWGG	1 cut(s)	181
EcoT14I	CCWWGG	2 cut(s)	147, 223
ErhI	CCWWGG	2 cut(s)	147, 223
FaeI	CATG	3 cut(s)	78, 227, 389
FaiI	YATR	7 cut(s)	26, 76, 102, 191, 225, 380, 387
FaqI	GGGAC	1 cut(s)	378
FatI	CATG	3 cut(s)	74, 223, 385
FauI	CCCGC	1 cut(s)	355
Fnu4HI	GCNGC	5 cut(s)	12, 21, 97, 309, 360
Fsp4HI	GCNGC	5 cut(s)	12, 21, 97, 309, 360
GluI	GCNGC	5 cut(s)	12, 21, 97, 309, 360
HaeIII	GGCC	2 cut(s)	168, 181
HapII	CCGG	2 cut(s)	15, 84
Hin1II	CATG	3 cut(s)	78, 227, 389
HinfI	GANTC	2 cut(s)	28, 299
HpaII	CCGG	2 cut(s)	15, 84
Hpy188I	TCNGA	2 cut(s)	70, 335
Hpy188III	TCNNGA	1 cut(s)	386
Hpy99I	CGWCG	1 cut(s)	275
HpyCH4III	ACNGT	1 cut(s)	207
HpyCH4V	TGCA	2 cut(s)	96, 193
HpyF10VI	GCNNNNNNNGC	5 cut(s)	17, 20, 174, 178, 368
HpyF3I	CTNAG	1 cut(s)	107
Hsp92II	CATG	3 cut(s)	78, 227, 389
Kzo9I	GATC	3 cut(s)	274, 372, 382
LmnI	GCTCC	3 cut(s)	17, 86, 313
Lsp1109I	GCAGC	3 cut(s)	7, 108, 371
LweI	GCATC	1 cut(s)	164
MaeIII	GTNAC	1 cut(s)	227
MalI	GATC	3 cut(s)	276, 374, 384
MboI	GATC	3 cut(s)	274, 372, 382
MboII	GAAGA	4 cut(s)	278, 295, 298, 367
MhlI	GDGCHC	1 cut(s)	349
MluCI	AATT	3 cut(s)	64, 139, 261
MnlI	CCTC	3 cut(s)	37, 209, 341
MspA1I	CMGCKG	1 cut(s)	362
MspI	CCGG	2 cut(s)	15, 84
MspR9I	CCNGG	1 cut(s)	183
MvaI	CCWGG	1 cut(s)	183
MwoI	GCNNNNNNNGC	5 cut(s)	17, 20, 174, 178, 368
NcoI	CCATGG	1 cut(s)	223
NdeII	GATC	3 cut(s)	274, 372, 382
NlaIII	CATG	3 cut(s)	78, 227, 389
NlaIV	GGNNCC	3 cut(s)	156, 315, 337
NmuCI	GTSAC	1 cut(s)	227
NspI	RCATGY	1 cut(s)	78
PaeI	GCATGC	1 cut(s)	78
PagI	TCATGA	1 cut(s)	385
PfeI	GAWTC	2 cut(s)	28, 299
PkrI	GCNGC	5 cut(s)	13, 22, 98, 310, 361
Psp6I	CCWGG	1 cut(s)	181
PspGI	CCWGG	1 cut(s)	181
PspN4I	GGNNCC	3 cut(s)	156, 315, 337
PspPI	GGNCC	1 cut(s)	335
SatI	GCNGC	5 cut(s)	12, 21, 97, 309, 360
Sau3AI	GATC	3 cut(s)	274, 372, 382
Sau96I	GGNCC	1 cut(s)	335
ScrFI	CCNGG	1 cut(s)	183
SduI	GDGCHC	1 cut(s)	349
SetI	ASST	6 cut(s)	22, 101, 149, 201, 333, 393
SfaNI	GCATC	1 cut(s)	164
SinI	GGWCC	1 cut(s)	335
SphI	GCATGC	1 cut(s)	78
Sse9I	AATT	3 cut(s)	64, 139, 261
SsiI	CCGC	6 cut(s)	9, 12, 113, 308, 311, 362
StyD4I	CCNGG	1 cut(s)	181
StyI	CCWWGG	2 cut(s)	147, 223
TaaI	ACNGT	1 cut(s)	207
TaqI	TCGA	2 cut(s)	118, 132
TasI	AATT	3 cut(s)	64, 139, 261
TauI	GCSGC	2 cut(s)	14, 311
TfiI	GAWTC	2 cut(s)	28, 299
TseFI	GTSAC	1 cut(s)	227
TseI	GCWGC	3 cut(s)	20, 96, 359
Tsp45I	GTSAC	1 cut(s)	227
TspDTI	ATGAA	1 cut(s)	367
VpaK11BI	GGWCC	1 cut(s)	335
XapI	RAATTY	2 cut(s)	64, 139
XceI	RCATGY	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.