Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000361.1

Orthogroup ID

OG0002407

Physical Location & Seq

Genomic Coordinates Reverse (-)

59273 .. 59684

Gene Structure 412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000361.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

atggaagagatgatctttggtttgtcattcaagcaagaaaatactattcttgatgaaccagttgttgacttgttgacgtttgtgaacaacaagctagacatagcagttgcaagagcaagattgccgtccggacggaatccattacagcagcttgttttgataattgcagatggccatttacatgagaaggagaggttgaaacattgttttaggaatgccttggctaagaaccggatggttgcatttttgcttgttgataacccacagattccacagaattccatgacgaacaacacctattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003824 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009553 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0022613 GO:0022618 GO:0030054 GO:0030684 GO:0030687 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0040008 GO:0042254 GO:0042255 GO:0042273 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0048229 GO:0048638 GO:0048856 GO:0050789 GO:0050793 GO:0055044 GO:0065003 GO:0065007 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AAA_5

Protein Analysis

100

Amino Acids

11.44

Weight (kDa)

6.82

Isoelectric Point (pI)

30.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002407)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0357141
rosa_laevigata	RLG00000002011 RLG00000003375 RLG00000004903 RLG00000007386 RLG00000009065 RLG00000009288 RLG00000013868 RLG00000014254 RLG00000014965 RLG00000015454 RLG00000028014 RLG00000029416 RLG00000032950 RLG00000036480 RLG00000037033
rosa_multiflora	Rmu_sc0000227.1_g000012 Rmu_ssc0000361.1_g000010 Rmu_ssc0000420.1_g000021
rosa_roxburghii	Rroxscaffold_1G00008600 Rroxscaffold_1G00017770 Rroxscaffold_2G00103190 Rroxscaffold_7G00160850
rosa_rugosa	Rorug01G0134400.1 Rorug02G0253700 Rorug06G0012400
rosa_samantha	Rh1CG204200 Rh2AG323900 Rh2AG477000 Rh2BG488800 Rh2CG462700 Rh2DG497800 Rh3AG144500 Rh3BG166900 Rh4BG074700 Rh4BG080300 Rh5CG311500 Rh6BG200700 Rh6CG201900 Rh7AG241500 Rh7CG256100
rosa_wichuraiana	Rw6G017170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	128
AcoI	YGGCCR	1 cut(s)	172
AcsI	RAATTY	1 cut(s)	277
AgsI	TTSAA	2 cut(s)	31, 199
AluBI	AGCT	2 cut(s)	94, 151
AluI	AGCT	2 cut(s)	94, 151
Aor13HI	TCCGGA	1 cut(s)	128
AoxI	GGCC	1 cut(s)	172
ApeKI	GCWGC	1 cut(s)	148
ApoI	RAATTY	1 cut(s)	277
BalI	TGGCCA	1 cut(s)	174
BbvI	GCAGC	1 cut(s)	160
BccI	CCATC	2 cut(s)	164, 229
BceAI	ACGGC	1 cut(s)	109
BfaI	CTAG	1 cut(s)	95
BisI	GCNGC	1 cut(s)	149
BlsI	GCNGC	1 cut(s)	150
BsaJI	CCNNGG	1 cut(s)	219
BsaWI	WCCGGW	2 cut(s)	128, 231
Bse1I	ACTGG	1 cut(s)	59
BseAI	TCCGGA	1 cut(s)	128
BseDI	CCNNGG	1 cut(s)	219
BseGI	GGATG	1 cut(s)	240
BseNI	ACTGG	1 cut(s)	59
BseXI	GCAGC	1 cut(s)	160
BshFI	GGCC	1 cut(s)	174
BsiSI	CCGG	2 cut(s)	129, 232
BsmI	GAATGC	1 cut(s)	220
BsnI	GGCC	1 cut(s)	174
Bsp13I	TCCGGA	1 cut(s)	128
Bsp143I	GATC	1 cut(s)	12
BspANI	GGCC	1 cut(s)	174
BspEI	TCCGGA	1 cut(s)	128
BsrI	ACTGG	1 cut(s)	59
BssECI	CCNNGG	1 cut(s)	219
BssMI	GATC	1 cut(s)	12
BssT1I	CCWWGG	1 cut(s)	219
BstDEI	CTNAG	1 cut(s)	225
BstF5I	GGATG	1 cut(s)	240
BstKTI	GATC	1 cut(s)	15
BstMBI	GATC	1 cut(s)	12
BstV1I	GCAGC	1 cut(s)	160
BsuRI	GGCC	1 cut(s)	174
BtsCI	GGATG	1 cut(s)	240
CviAII	CATG	2 cut(s)	182, 283
CviJI	RGCY	4 cut(s)	94, 151, 174, 224
CviKI_1	RGCY	4 cut(s)	94, 151, 174, 224
DdeI	CTNAG	1 cut(s)	225
DpnI	GATC	1 cut(s)	14
DpnII	GATC	1 cut(s)	12
EaeI	YGGCCR	1 cut(s)	172
Eco130I	CCWWGG	1 cut(s)	219
EcoRI	GAATTC	1 cut(s)	277
EcoT14I	CCWWGG	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	219
FaeI	CATG	2 cut(s)	185, 286
FaiI	YATR	3 cut(s)	101, 183, 284
FatI	CATG	2 cut(s)	181, 282
Fnu4HI	GCNGC	1 cut(s)	149
FokI	GGATG	1 cut(s)	247
Fsp4HI	GCNGC	1 cut(s)	149
FspBI	CTAG	1 cut(s)	95
GluI	GCNGC	1 cut(s)	149
HaeIII	GGCC	1 cut(s)	174
HapII	CCGG	2 cut(s)	129, 232
Hin1II	CATG	2 cut(s)	185, 286
HincII	GTYRAC	2 cut(s)	67, 75
HindII	GTYRAC	2 cut(s)	67, 75
HinfI	GANTC	2 cut(s)	136, 268
HpaII	CCGG	2 cut(s)	129, 232
Hpy166II	GTNNAC	3 cut(s)	67, 75, 85
Hpy188III	TCNNGA	2 cut(s)	50, 129
Hpy8I	GTNNAC	3 cut(s)	67, 75, 85
HpyAV	CCTTC	1 cut(s)	181
HpyCH4IV	ACGT	1 cut(s)	77
HpyCH4V	TGCA	3 cut(s)	110, 167, 242
HpyF3I	CTNAG	1 cut(s)	225
HpySE526I	ACGT	1 cut(s)	77
Hsp92II	CATG	2 cut(s)	185, 286
Kpn2I	TCCGGA	1 cut(s)	128
Kzo9I	GATC	1 cut(s)	12
LpnPI	CCDG	3 cut(s)	72, 142, 245
Lsp1109I	GCAGC	1 cut(s)	160
MaeI	CTAG	1 cut(s)	95
MaeII	ACGT	1 cut(s)	77
MalI	GATC	1 cut(s)	14
MboI	GATC	1 cut(s)	12
MboII	GAAGA	1 cut(s)	17
MlsI	TGGCCA	1 cut(s)	174
MluCI	AATT	2 cut(s)	162, 277
MluNI	TGGCCA	1 cut(s)	174
MnlI	CCTC	1 cut(s)	186
Mox20I	TGGCCA	1 cut(s)	174
MroI	TCCGGA	1 cut(s)	128
MscI	TGGCCA	1 cut(s)	174
MseI	TTAA	1 cut(s)	301
MslI	CAYNNNNRTG	1 cut(s)	180
Msp20I	TGGCCA	1 cut(s)	174
MspI	CCGG	2 cut(s)	129, 232
Mva1269I	GAATGC	1 cut(s)	220
NdeII	GATC	1 cut(s)	12
NlaIII	CATG	2 cut(s)	185, 286
PctI	GAATGC	1 cut(s)	220
PfeI	GAWTC	2 cut(s)	136, 268
PkrI	GCNGC	1 cut(s)	150
RseI	CAYNNNNRTG	1 cut(s)	180
SaqAI	TTAA	1 cut(s)	301
SatI	GCNGC	1 cut(s)	149
Sau3AI	GATC	1 cut(s)	12
SetI	ASST	5 cut(s)	80, 96, 153, 197, 299
SmiMI	CAYNNNNRTG	1 cut(s)	180
Sse9I	AATT	2 cut(s)	162, 277
SspMI	CTAG	1 cut(s)	95
StyI	CCWWGG	1 cut(s)	219
TaiI	ACGT	1 cut(s)	80
TasI	AATT	2 cut(s)	162, 277
TfiI	GAWTC	2 cut(s)	136, 268
Tru1I	TTAA	1 cut(s)	301
Tru9I	TTAA	1 cut(s)	301
TseI	GCWGC	1 cut(s)	148
TspDTI	ATGAA	1 cut(s)	69
TspGWI	ACGGA	1 cut(s)	148
XapI	RAATTY	1 cut(s)	277
XspI	CTAG	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.