Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0002407

Physical Location & Seq

Genomic Coordinates Forward (+)

34083566 .. 34089231

Gene Structure 5666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G017170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGTCTGAGAGTTGCTGTGGGGATGTTGCTATTGAAGCTCTGGTGACAGTGTGTCATACAATGTCACAGCTGAAAAATACTACCAGCCTTGCTGTTGTAAGCTTTGGAAAGAAAGGCAACATAAGGTTGCTCTATGACTTTGATCAGCCCTTTACTGGAGACGCTGATGTTAAGATGATCTTTGGTTTGTCATTCAAGCAAGAAAATACTATTCTTGATGAACCAATTGTCGACTTGTTGACGTTTGTGAACAACAAGCCAGACACAGCAGTTGCAAGAGCAAGATTGCTGTCCGGACGGAATCCATTACAGCAGCTTGTTTTGATAATTGCAGATGGTCATTTACATGAGAAGAAGTTTGTACTGTCAACTGAGGAACAGATTCTAACTGTGGGAGCTGTTGAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003824 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009553 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0022613 GO:0022618 GO:0030054 GO:0030684 GO:0030687 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0040008 GO:0042254 GO:0042255 GO:0042273 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0048229 GO:0048638 GO:0048856 GO:0050789 GO:0050793 GO:0055044 GO:0065003 GO:0065007 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AAA_5

Protein Analysis

136

Amino Acids

14.94

Weight (kDa)

5.29

Isoelectric Point (pI)

45.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002407)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0357141
rosa_laevigata	RLG00000002011 RLG00000003375 RLG00000004903 RLG00000007386 RLG00000009065 RLG00000009288 RLG00000013868 RLG00000014254 RLG00000014965 RLG00000015454 RLG00000028014 RLG00000029416 RLG00000032950 RLG00000036480 RLG00000037033
rosa_multiflora	Rmu_sc0000227.1_g000012 Rmu_ssc0000361.1_g000010 Rmu_ssc0000420.1_g000021
rosa_roxburghii	Rroxscaffold_1G00008600 Rroxscaffold_1G00017770 Rroxscaffold_2G00103190 Rroxscaffold_7G00160850
rosa_rugosa	Rorug01G0134400.1 Rorug02G0253700 Rorug06G0012400
rosa_samantha	Rh1CG204200 Rh2AG323900 Rh2AG477000 Rh2BG488800 Rh2CG462700 Rh2DG497800 Rh3AG144500 Rh3BG166900 Rh4BG074700 Rh4BG080300 Rh5CG311500 Rh6BG200700 Rh6CG201900 Rh7AG241500 Rh7CG256100
rosa_wichuraiana	Rw6G017170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	231
AccIII	TCCGGA	1 cut(s)	293
AfaI	GTAC	1 cut(s)	363
AfiI	CCNNNNNNNGG	1 cut(s)	155
AgsI	TTSAA	2 cut(s)	35, 196
AhdI	GACNNNNNGTC	1 cut(s)	51
AluBI	AGCT	5 cut(s)	38, 70, 102, 316, 398
AluI	AGCT	5 cut(s)	38, 70, 102, 316, 398
Alw26I	GTCTC	1 cut(s)	153
Aor13HI	TCCGGA	1 cut(s)	293
ApeKI	GCWGC	1 cut(s)	313
Asp700I	GAANNNNTTC	1 cut(s)	381
AsuHPI	GGTGA	1 cut(s)	55
BbvI	GCAGC	1 cut(s)	325
BccI	CCATC	1 cut(s)	329
BclI	TGATCA	1 cut(s)	142
BcoDI	GTCTC	1 cut(s)	153
BisI	GCNGC	1 cut(s)	314
BlsI	GCNGC	1 cut(s)	315
BmeRI	GACNNNNNGTC	1 cut(s)	51
BpmI	CTGGAG	1 cut(s)	177
BsaWI	WCCGGW	1 cut(s)	293
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
Bse1I	ACTGG	1 cut(s)	160
BseAI	TCCGGA	1 cut(s)	293
BseGI	GGATG	1 cut(s)	28
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseMII	CTCAG	1 cut(s)	363
BseNI	ACTGG	1 cut(s)	160
BseXI	GCAGC	1 cut(s)	325
BsiSI	CCGG	1 cut(s)	294
BslI	CCNNNNNNNGG	1 cut(s)	155
BsmAI	GTCTC	1 cut(s)	153
BsmBI	CGTCTC	1 cut(s)	153
Bsp13I	TCCGGA	1 cut(s)	293
Bsp143I	GATC	2 cut(s)	142, 177
BspCNI	CTCAG	1 cut(s)	364
BspEI	TCCGGA	1 cut(s)	293
BsrI	ACTGG	1 cut(s)	160
BssMI	GATC	2 cut(s)	142, 177
Bst4CI	ACNGT	3 cut(s)	49, 366, 391
BstDEI	CTNAG	2 cut(s)	6, 372
BstF5I	GGATG	1 cut(s)	28
BstKTI	GATC	2 cut(s)	145, 180
BstMAI	GTCTC	1 cut(s)	153
BstMBI	GATC	2 cut(s)	142, 177
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstV1I	GCAGC	1 cut(s)	325
BtsCI	GGATG	1 cut(s)	28
BtsIMutI	CAGTG	1 cut(s)	54
CseI	GACGC	1 cut(s)	170
Csp6I	GTAC	1 cut(s)	362
CviAII	CATG	1 cut(s)	347
CviJI	RGCY	8 cut(s)	38, 70, 87, 102, 148, 259, 316, 398
CviKI_1	RGCY	8 cut(s)	38, 70, 87, 102, 148, 259, 316, 398
CviQI	GTAC	1 cut(s)	362
DdeI	CTNAG	2 cut(s)	6, 372
DpnI	GATC	2 cut(s)	144, 179
DpnII	GATC	2 cut(s)	142, 177
DriI	GACNNNNNGTC	1 cut(s)	51
Eam1105I	GACNNNNNGTC	1 cut(s)	51
Esp3I	CGTCTC	1 cut(s)	153
FaeI	CATG	1 cut(s)	350
FaiI	YATR	4 cut(s)	57, 122, 135, 348
FalI	AAGNNNNNCTT	2 cut(s)	164, 196
FatI	CATG	1 cut(s)	346
FbaI	TGATCA	1 cut(s)	142
FblI	GTMKAC	1 cut(s)	231
Fnu4HI	GCNGC	1 cut(s)	314
FokI	GGATG	1 cut(s)	35
Fsp4HI	GCNGC	1 cut(s)	314
GluI	GCNGC	1 cut(s)	314
GsuI	CTGGAG	1 cut(s)	177
HapII	CCGG	1 cut(s)	294
HgaI	GACGC	1 cut(s)	170
Hin1II	CATG	1 cut(s)	350
HincII	GTYRAC	3 cut(s)	232, 240, 369
HindII	GTYRAC	3 cut(s)	232, 240, 369
HindIII	AAGCTT	1 cut(s)	100
HinfI	GANTC	2 cut(s)	301, 382
HpaII	CCGG	1 cut(s)	294
HphI	GGTGA	1 cut(s)	55
Hpy166II	GTNNAC	4 cut(s)	232, 240, 250, 369
Hpy188I	TCNGA	1 cut(s)	7
Hpy188III	TCNNGA	2 cut(s)	215, 294
Hpy8I	GTNNAC	4 cut(s)	232, 240, 250, 369
HpyCH4III	ACNGT	3 cut(s)	49, 366, 391
HpyCH4IV	ACGT	1 cut(s)	242
HpyCH4V	TGCA	2 cut(s)	275, 332
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpyF3I	CTNAG	2 cut(s)	6, 372
HpySE526I	ACGT	1 cut(s)	242
Hsp92II	CATG	1 cut(s)	350
Kpn2I	TCCGGA	1 cut(s)	293
Ksp22I	TGATCA	1 cut(s)	142
Kzo9I	GATC	2 cut(s)	142, 177
LmnI	GCTCC	1 cut(s)	395
LpnPI	CCDG	5 cut(s)	26, 97, 141, 273, 307
Lsp1109I	GCAGC	1 cut(s)	325
MaeII	ACGT	1 cut(s)	242
MaeIII	GTNAC	2 cut(s)	43, 63
MalI	GATC	2 cut(s)	144, 179
MboI	GATC	2 cut(s)	142, 177
MboII	GAAGA	1 cut(s)	364
MfeI	CAATTG	1 cut(s)	225
MluCI	AATT	2 cut(s)	225, 327
MnlI	CCTC	1 cut(s)	367
MroI	TCCGGA	1 cut(s)	293
MroXI	GAANNNNTTC	1 cut(s)	381
MseI	TTAA	1 cut(s)	171
MslI	CAYNNNNRTG	1 cut(s)	345
MspA1I	CMGCKG	1 cut(s)	70
MspI	CCGG	1 cut(s)	294
MunI	CAATTG	1 cut(s)	225
MwoI	GCNNNNNNNGC	1 cut(s)	35
NdeII	GATC	2 cut(s)	142, 177
NlaIII	CATG	1 cut(s)	350
NmuCI	GTSAC	2 cut(s)	43, 63
PdmI	GAANNNNTTC	1 cut(s)	381
PfeI	GAWTC	2 cut(s)	301, 382
PkrI	GCNGC	1 cut(s)	315
PvuII	CAGCTG	1 cut(s)	70
RsaI	GTAC	1 cut(s)	363
RsaNI	GTAC	1 cut(s)	362
RseI	CAYNNNNRTG	1 cut(s)	345
SalI	GTCGAC	1 cut(s)	230
SaqAI	TTAA	1 cut(s)	171
SatI	GCNGC	1 cut(s)	314
Sau3AI	GATC	2 cut(s)	142, 177
SetI	ASST	7 cut(s)	40, 72, 104, 128, 245, 318, 400
SmiMI	CAYNNNNRTG	1 cut(s)	345
Sse9I	AATT	2 cut(s)	225, 327
TaaI	ACNGT	3 cut(s)	49, 366, 391
TaiI	ACGT	1 cut(s)	245
TaqI	TCGA	1 cut(s)	231
TasI	AATT	2 cut(s)	225, 327
TatI	WGTACW	1 cut(s)	361
TfiI	GAWTC	2 cut(s)	301, 382
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TscAI	CASTG	1 cut(s)	54
TseFI	GTSAC	2 cut(s)	43, 63
TseI	GCWGC	1 cut(s)	313
Tsp45I	GTSAC	2 cut(s)	43, 63
TspDTI	ATGAA	1 cut(s)	234
TspGWI	ACGGA	1 cut(s)	313
TspRI	CASTG	1 cut(s)	54
XmiI	GTMKAC	1 cut(s)	231
XmnI	GAANNNNTTC	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.