Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002407

Physical Location & Seq

Genomic Coordinates Reverse (-)

66215158 .. 66218480

Gene Structure 3323 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015454

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGAAGCTTTCACCGAATCTTGGGTTTCTTCTTCAATCCAAGAAAAACCCAAAGGAGGAGGTATCAGTATCGACAGTAGAGATGGTGTGGCAAAGGGAAAACTGGTGGAAAGGAAGGCTTTATTGGCAAGTCCCTACATAGCAAGTGAGTACCAGAAAGATAAAATATGGCTAAGACGGACCCGGCCTAACAAACGTGATTATCAAGTTGTTATTGCTGTTGATGATTCCCACAGTATGTCTGAGAGTTGCTGTGGGGATGTTGCTATTGAAGCTCTGGTGACAGTGTGTCATGCAATGTCACAACTGGTTTGTGGTCAAGTTCTGATTTGGATCGGTCTGGTGCTTGTTGGAGCTGGAAAGTCTAGTCTAGTGTTGTGCTTTATTCAAGGACAGTTCATTGAATTTCAGGATATTGATTTTTATTGTGTGATACTGTACAAATCGACAATTAGTGCTGCCTTCTTCTTGCAAACATTGGCTGTAAATGACGCAACTGTAAAATTTGAGATTTGGGATACAGCAGGTCAAGAGAGGTACCATACAAAAAAATGGGTGCTAGAACTGAAATCACAAGGCAATTCAAATATGGTCATGGCACTAGCTGGGAATAAAGCAGATCTGGGAACACGTAAAGCCATGAAAGATGACACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005783 GO:0005886 GO:0006810 GO:0006886 GO:0006996 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0017076 GO:0019001 GO:0030139 GO:0031410 GO:0031982 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033036 GO:0034613 GO:0035639 GO:0036094 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0097708 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04014 ko04144 ko04145 ko04962 ko05014 ko05146 ko05152 map04014 map04144 map04145 map04962 map05014 map05146 map05152

Pfam Domains

Protein Families

Ras

Protein Analysis

219

Amino Acids

24.14

Weight (kDa)

6.82

Isoelectric Point (pI)

40.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	118 - 182	6.3e-12	Ras family
Roc	PF08477	118 - 182	2.4e-07	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002407)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0357141
rosa_laevigata	RLG00000002011 RLG00000003375 RLG00000004903 RLG00000007386 RLG00000009065 RLG00000009288 RLG00000013868 RLG00000014254 RLG00000014965 RLG00000015454 RLG00000028014 RLG00000029416 RLG00000032950 RLG00000036480 RLG00000037033
rosa_multiflora	Rmu_sc0000227.1_g000012 Rmu_ssc0000361.1_g000010 Rmu_ssc0000420.1_g000021
rosa_roxburghii	Rroxscaffold_1G00008600 Rroxscaffold_1G00017770 Rroxscaffold_2G00103190 Rroxscaffold_7G00160850
rosa_rugosa	Rorug01G0134400.1 Rorug02G0253700 Rorug06G0012400
rosa_samantha	Rh1CG204200 Rh2AG323900 Rh2AG477000 Rh2BG488800 Rh2CG462700 Rh2DG497800 Rh3AG144500 Rh3BG166900 Rh4BG074700 Rh4BG080300 Rh5CG311500 Rh6BG200700 Rh6CG201900 Rh7AG241500 Rh7CG256100
rosa_wichuraiana	Rw6G017170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	515
Acc65I	GGTACC	1 cut(s)	537
AccB1I	GGYRCC	1 cut(s)	537
AclWI	GGATC	1 cut(s)	341
AcsI	RAATTY	2 cut(s)	404, 503
AfaI	GTAC	3 cut(s)	152, 440, 539
AfiI	CCNNNNNNNGG	2 cut(s)	21, 56
AflIII	ACRYGT	1 cut(s)	629
AgsI	TTSAA	5 cut(s)	36, 272, 389, 404, 585
AhdI	GACNNNNNGTC	1 cut(s)	288
AjuI	GAANNNNNNNTTGG	2 cut(s)	107, 139
AluBI	AGCT	4 cut(s)	8, 275, 356, 605
AluI	AGCT	4 cut(s)	8, 275, 356, 605
AlwI	GGATC	1 cut(s)	341
AoxI	GGCC	1 cut(s)	185
ApeKI	GCWGC	1 cut(s)	458
ApoI	RAATTY	2 cut(s)	404, 503
Asp718I	GGTACC	1 cut(s)	537
AspS9I	GGNCC	1 cut(s)	180
AsuC2I	CCSGG	1 cut(s)	184
AsuHPI	GGTGA	2 cut(s)	4, 292
AvaII	GGWCC	1 cut(s)	180
BanI	GGYRCC	1 cut(s)	537
BbvI	GCAGC	1 cut(s)	445
BccI	CCATC	1 cut(s)	77
BciVI	GTATCC	1 cut(s)	511
BcnI	CCSGG	1 cut(s)	184
BfaI	CTAG	4 cut(s)	366, 371, 560, 602
BfuAI	ACCTGC	1 cut(s)	515
BfuI	GTATCC	1 cut(s)	511
BglII	AGATCT	1 cut(s)	619
BisI	GCNGC	1 cut(s)	459
BlsI	GCNGC	1 cut(s)	460
Bme1390I	CCNGG	1 cut(s)	184
Bme18I	GGWCC	1 cut(s)	180
BmeRI	GACNNNNNGTC	1 cut(s)	288
BmgT120I	GGNCC	1 cut(s)	180
BmiI	GGNNCC	2 cut(s)	182, 539
BmrFI	CCNGG	1 cut(s)	184
BpuMI	CCSGG	1 cut(s)	184
BsaAI	YACGTR	1 cut(s)	632
BsaBI	GATNNNNATC	1 cut(s)	332
Bsc4I	CCNNNNNNNGG	2 cut(s)	21, 56
Bse1I	ACTGG	2 cut(s)	108, 312
Bse3DI	GCAATG	1 cut(s)	303
Bse8I	GATNNNNATC	1 cut(s)	332
BseGI	GGATG	1 cut(s)	265
BseJI	GATNNNNATC	1 cut(s)	332
BseLI	CCNNNNNNNGG	2 cut(s)	21, 56
BseMI	GCAATG	1 cut(s)	303
BseMII	CTCAG	1 cut(s)	234
BseNI	ACTGG	2 cut(s)	108, 312
BseRI	GAGGAG	1 cut(s)	72
BseXI	GCAGC	1 cut(s)	445
BseYI	CCCAGC	1 cut(s)	605
BshFI	GGCC	1 cut(s)	187
BshNI	GGYRCC	1 cut(s)	537
BsiSI	CCGG	1 cut(s)	184
BslFI	GGGAC	1 cut(s)	117
BslI	CCNNNNNNNGG	2 cut(s)	21, 56
BsmFI	GGGAC	1 cut(s)	117
BsnI	GGCC	1 cut(s)	187
Bsp1407I	TGTACA	1 cut(s)	438
Bsp143I	GATC	2 cut(s)	333, 619
BspANI	GGCC	1 cut(s)	187
BspCNI	CTCAG	1 cut(s)	235
BspLI	GGNNCC	2 cut(s)	182, 539
BspMI	ACCTGC	1 cut(s)	515
BspPI	GGATC	1 cut(s)	341
BspT107I	GGYRCC	1 cut(s)	537
BsrDI	GCAATG	1 cut(s)	303
BsrGI	TGTACA	1 cut(s)	438
BsrI	ACTGG	2 cut(s)	108, 312
BssMI	GATC	2 cut(s)	333, 619
Bst4CI	ACNGT	6 cut(s)	77, 236, 286, 396, 438, 499
BstAUI	TGTACA	1 cut(s)	438
BstBAI	YACGTR	1 cut(s)	632
BstDEI	CTNAG	2 cut(s)	173, 243
BstF5I	GGATG	1 cut(s)	265
BstKTI	GATC	2 cut(s)	336, 622
BstMBI	GATC	2 cut(s)	333, 619
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 272
BstSCI	CCNGG	1 cut(s)	182
BstV1I	GCAGC	1 cut(s)	445
BstX2I	RGATCY	1 cut(s)	619
BstYI	RGATCY	1 cut(s)	619
BsuI	GTATCC	1 cut(s)	511
BsuRI	GGCC	1 cut(s)	187
BtsCI	GGATG	1 cut(s)	265
BtsIMutI	CAGTG	1 cut(s)	291
BveI	ACCTGC	1 cut(s)	515
Cfr13I	GGNCC	1 cut(s)	180
CseI	GACGC	1 cut(s)	500
Csp6I	GTAC	3 cut(s)	151, 439, 538
CviAII	CATG	3 cut(s)	293, 595, 640
CviJI	RGCY	9 cut(s)	8, 119, 172, 187, 275, 356, 482, 605, 638
CviKI_1	RGCY	9 cut(s)	8, 119, 172, 187, 275, 356, 482, 605, 638
CviQI	GTAC	3 cut(s)	151, 439, 538
DdeI	CTNAG	2 cut(s)	173, 243
DpnI	GATC	2 cut(s)	335, 621
DpnII	GATC	2 cut(s)	333, 619
DriI	GACNNNNNGTC	1 cut(s)	288
Eam1105I	GACNNNNNGTC	1 cut(s)	288
Eco47I	GGWCC	1 cut(s)	180
FaeI	CATG	3 cut(s)	296, 598, 643
FaiI	YATR	8 cut(s)	140, 169, 239, 294, 543, 590, 596, 641
FalI	AAGNNNNNCTT	2 cut(s)	103, 135
FaqI	GGGAC	1 cut(s)	117
FatI	CATG	3 cut(s)	292, 594, 639
Fnu4HI	GCNGC	1 cut(s)	459
FokI	GGATG	1 cut(s)	272
Fsp4HI	GCNGC	1 cut(s)	459
FspBI	CTAG	4 cut(s)	366, 371, 560, 602
GluI	GCNGC	1 cut(s)	459
GsaI	CCCAGC	1 cut(s)	609
HaeIII	GGCC	1 cut(s)	187
HapII	CCGG	1 cut(s)	184
HgaI	GACGC	1 cut(s)	500
Hin1II	CATG	3 cut(s)	296, 598, 643
HindIII	AAGCTT	1 cut(s)	6
HinfI	GANTC	2 cut(s)	17, 227
HpaII	CCGG	1 cut(s)	184
HphI	GGTGA	2 cut(s)	4, 292
Hpy188I	TCNGA	2 cut(s)	244, 327
Hpy188III	TCNNGA	2 cut(s)	410, 530
HpyAV	CCTTC	2 cut(s)	109, 472
HpyCH4III	ACNGT	6 cut(s)	77, 236, 286, 396, 438, 499
HpyCH4IV	ACGT	2 cut(s)	196, 631
HpyCH4V	TGCA	2 cut(s)	296, 472
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 272
HpyF3I	CTNAG	2 cut(s)	173, 243
HpySE526I	ACGT	2 cut(s)	196, 631
Hsp92II	CATG	3 cut(s)	296, 598, 643
KpnI	GGTACC	1 cut(s)	541
Kzo9I	GATC	2 cut(s)	333, 619
LmnI	GCTCC	1 cut(s)	353
Lsp1109I	GCAGC	1 cut(s)	445
MaeI	CTAG	4 cut(s)	366, 371, 560, 602
MaeII	ACGT	2 cut(s)	196, 631
MaeIII	GTNAC	2 cut(s)	280, 300
MalI	GATC	2 cut(s)	335, 621
MboI	GATC	2 cut(s)	333, 619
MboII	GAAGA	3 cut(s)	21, 24, 457
MflI	RGATCY	1 cut(s)	619
MluCI	AATT	4 cut(s)	404, 450, 503, 580
MmeI	TCCRAC	1 cut(s)	331
MnlI	CCTC	3 cut(s)	50, 53, 528
MspI	CCGG	1 cut(s)	184
MspR9I	CCNGG	1 cut(s)	184
MwoI	GCNNNNNNNGC	2 cut(s)	125, 272
NciI	CCSGG	1 cut(s)	184
NdeII	GATC	2 cut(s)	333, 619
NlaIII	CATG	3 cut(s)	296, 598, 643
NlaIV	GGNNCC	2 cut(s)	182, 539
NmuCI	GTSAC	2 cut(s)	280, 300
PfeI	GAWTC	2 cut(s)	17, 227
PkrI	GCNGC	1 cut(s)	460
Ppu21I	YACGTR	1 cut(s)	632
PspFI	CCCAGC	1 cut(s)	605
PspN4I	GGNNCC	2 cut(s)	182, 539
PspPI	GGNCC	1 cut(s)	180
PsuI	RGATCY	1 cut(s)	619
RsaI	GTAC	3 cut(s)	152, 440, 539
RsaNI	GTAC	3 cut(s)	151, 439, 538
SatI	GCNGC	1 cut(s)	459
Sau3AI	GATC	2 cut(s)	333, 619
Sau96I	GGNCC	1 cut(s)	180
ScrFI	CCNGG	1 cut(s)	184
SetI	ASST	9 cut(s)	10, 64, 199, 277, 358, 529, 539, 607, 634
SinI	GGWCC	1 cut(s)	180
Sse9I	AATT	4 cut(s)	404, 450, 503, 580
SspMI	CTAG	4 cut(s)	366, 371, 560, 602
StyD4I	CCNGG	1 cut(s)	182
TaaI	ACNGT	6 cut(s)	77, 236, 286, 396, 438, 499
TaiI	ACGT	2 cut(s)	199, 634
TaqI	TCGA	2 cut(s)	72, 446
TaqII	GACCGA	1 cut(s)	326
TasI	AATT	4 cut(s)	404, 450, 503, 580
TatI	WGTACW	1 cut(s)	438
TfiI	GAWTC	2 cut(s)	17, 227
TscAI	CASTG	1 cut(s)	291
TseFI	GTSAC	2 cut(s)	280, 300
TseI	GCWGC	1 cut(s)	458
Tsp45I	GTSAC	2 cut(s)	280, 300
TspDTI	ATGAA	2 cut(s)	388, 656
TspGWI	ACGGA	1 cut(s)	193
TspRI	CASTG	1 cut(s)	291
VpaK11BI	GGWCC	1 cut(s)	180
XapI	RAATTY	2 cut(s)	404, 503
XspI	CTAG	4 cut(s)	366, 371, 560, 602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.