RLG00000003375

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0002407
Physical Location & Seq
Forward (+)
47742664 .. 47743089
426 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003375

Sequence Viewer

Length: 426 bp
ATGTGTTGCTATAAACTTGGTCCGCTTCGACCCGTAATGCTTGACCTGAATTTGACCCTGTTGGAGCCCCGGACACTACAGCACCGCCAGCCCGGACTTATGCAAGACCTCACACAGTCCCTTAGGGTTTTCCACGGTCACAATCGTATCAAACGGCTTCTAATCGTTGAAATTGAAGACGACGATCTTGTGGAGAAGAACAACTACAATTCGATCGCCGCGGAGCATGACCAACTTAACCTCGAACCAGAACGAGCGCTCACAGCTGACGCAGCGGGACTGGCGATCTTCATAAATTATGACCTTGTTGGGCAGGCAAAACGAGGAAGCCGCCATTTGTTTTTGATGGGACCAACGACGGGGGCTATGGGGCCATGGTGGTGGAGGAAAGGATTCTTGGATCTGGGTGGATTAAGATCGGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

15.98

Weight (kDa)

6.96

Isoelectric Point (pI)

42.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 221
AciI CCGC 6 cut(s) 23, 85, 219, 221, 275, 331
AclWI GGATC 1 cut(s) 408
AcsI RAATTY 1 cut(s) 49
AfeI AGCGCT 1 cut(s) 258
AfiI CCNNNNNNNGG 1 cut(s) 359
AgsI TTSAA 2 cut(s) 170, 176
AjuI GAANNNNNNNTTGG 2 cut(s) 380, 412
AluBI AGCT 1 cut(s) 266
AluI AGCT 1 cut(s) 266
AlwI GGATC 1 cut(s) 408
Aor51HI AGCGCT 1 cut(s) 258
AoxI GGCC 1 cut(s) 371
ApeKI GCWGC 1 cut(s) 272
ApoI RAATTY 1 cut(s) 49
Asp700I GAANNNNTTC 1 cut(s) 392
AspLEI GCGC 1 cut(s) 259
AspS9I GGNCC 3 cut(s) 20, 350, 371
AsuC2I CCSGG 2 cut(s) 70, 93
AvaII GGWCC 2 cut(s) 20, 350
AxyI CCTNAGG 1 cut(s) 122
BaeI ACNNNNGTAYC 2 cut(s) 130, 163
BanII GRGCYC 1 cut(s) 69
BarI GAAGNNNNNNTAC 2 cut(s) 188, 220
BbsI GAAGAC 1 cut(s) 183
BbvI GCAGC 1 cut(s) 284
BccI CCATC 1 cut(s) 340
BceAI ACGGC 1 cut(s) 170
BcnI CCSGG 2 cut(s) 70, 93
BfmI CTRYAG 1 cut(s) 77
BfoI RGCGCY 1 cut(s) 260
BisI GCNGC 3 cut(s) 219, 273, 331
BlsI GCNGC 3 cut(s) 220, 274, 332
Bme1390I CCNGG 2 cut(s) 70, 93
Bme18I GGWCC 2 cut(s) 20, 350
BmgT120I GGNCC 3 cut(s) 20, 350, 371
BmiI GGNNCC 3 cut(s) 66, 351, 372
BmrFI CCNGG 2 cut(s) 70, 93
BpiI GAAGAC 1 cut(s) 183
BpuMI CCSGG 2 cut(s) 70, 93
BsaBI GATNNNNATC 1 cut(s) 415
BsaJI CCNNGG 4 cut(s) 68, 133, 219, 374
Bsc4I CCNNNNNNNGG 1 cut(s) 359
Bse1I ACTGG 1 cut(s) 285
Bse21I CCTNAGG 1 cut(s) 122
Bse8I GATNNNNATC 1 cut(s) 415
BseDI CCNNGG 4 cut(s) 68, 133, 219, 374
BseJI GATNNNNATC 1 cut(s) 415
BseLI CCNNNNNNNGG 1 cut(s) 359
BseNI ACTGG 1 cut(s) 285
BseXI GCAGC 1 cut(s) 284
Bsh1236I CGCG 1 cut(s) 221
Bsh1285I CGRYCG 1 cut(s) 216
BshFI GGCC 1 cut(s) 373
BsiEI CGRYCG 1 cut(s) 216
BsiSI CCGG 2 cut(s) 70, 93
BslFI GGGAC 3 cut(s) 103, 291, 363
BslI CCNNNNNNNGG 1 cut(s) 359
BsmFI GGGAC 3 cut(s) 103, 291, 363
BsnI GGCC 1 cut(s) 373
Bsp1286I GDGCHC 1 cut(s) 69
Bsp143I GATC 5 cut(s) 184, 213, 285, 400, 416
Bsp19I CCATGG 1 cut(s) 374
BspACI CCGC 6 cut(s) 23, 85, 219, 221, 275, 331
BspANI GGCC 1 cut(s) 373
BspFNI CGCG 1 cut(s) 221
BspLI GGNNCC 3 cut(s) 66, 351, 372
BspPI GGATC 1 cut(s) 408
BsrI ACTGG 1 cut(s) 285
BssECI CCNNGG 4 cut(s) 68, 133, 219, 374
BssMI GATC 5 cut(s) 184, 213, 285, 400, 416
BssT1I CCWWGG 1 cut(s) 374
Bst4CI ACNGT 2 cut(s) 117, 137
BstC8I GCNNGC 2 cut(s) 89, 315
BstDEI CTNAG 1 cut(s) 122
BstDSI CCRYGG 3 cut(s) 133, 219, 374
BstFNI CGCG 1 cut(s) 221
BstH2I RGCGCY 1 cut(s) 260
BstHHI GCGC 1 cut(s) 259
BstKTI GATC 5 cut(s) 187, 216, 288, 403, 419
BstMBI GATC 5 cut(s) 184, 213, 285, 400, 416
BstMCI CGRYCG 1 cut(s) 216
BstMWI GCNNNNNNNGC 4 cut(s) 88, 263, 272, 281
BstSCI CCNGG 2 cut(s) 68, 91
BstSFI CTRYAG 1 cut(s) 77
BstUI CGCG 1 cut(s) 221
BstV1I GCAGC 1 cut(s) 284
BstV2I GAAGAC 1 cut(s) 183
BstX2I RGATCY 1 cut(s) 400
BstXI CCANNNNNNTGG 1 cut(s) 381
BstYI RGATCY 1 cut(s) 400
Bsu36I CCTNAGG 1 cut(s) 122
BsuRI GGCC 1 cut(s) 373
BtgI CCRYGG 3 cut(s) 133, 219, 374
Cac8I GCNNGC 2 cut(s) 89, 315
CfoI GCGC 1 cut(s) 259
Cfr13I GGNCC 3 cut(s) 20, 350, 371
Cfr42I CCGCGG 1 cut(s) 222
CseI GACGC 1 cut(s) 278
CviAII CATG 2 cut(s) 227, 375
CviJI RGCY 7 cut(s) 67, 91, 157, 266, 330, 365, 373
CviKI_1 RGCY 7 cut(s) 67, 91, 157, 266, 330, 365, 373
DdeI CTNAG 1 cut(s) 122
DpnI GATC 5 cut(s) 186, 215, 287, 402, 418
DpnII GATC 5 cut(s) 184, 213, 285, 400, 416
Eco130I CCWWGG 1 cut(s) 374
Eco24I GRGCYC 1 cut(s) 69
Eco47I GGWCC 2 cut(s) 20, 350
Eco47III AGCGCT 1 cut(s) 258
Eco81I CCTNAGG 1 cut(s) 122
EcoT14I CCWWGG 1 cut(s) 374
EcoT38I GRGCYC 1 cut(s) 69
ErhI CCWWGG 1 cut(s) 374
FaeI CATG 2 cut(s) 230, 378
FaiI YATR 7 cut(s) 12, 101, 228, 293, 300, 368, 376
FaqI GGGAC 3 cut(s) 103, 291, 363
FatI CATG 2 cut(s) 226, 374
FauI CCCGC 1 cut(s) 268
Fnu4HI GCNGC 3 cut(s) 219, 273, 331
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 3 cut(s) 219, 273, 331
GlaI GCGC 1 cut(s) 258
GluI GCNGC 3 cut(s) 219, 273, 331
HaeII RGCGCY 1 cut(s) 260
HaeIII GGCC 1 cut(s) 373
HapII CCGG 2 cut(s) 70, 93
HgaI GACGC 1 cut(s) 278
HhaI GCGC 1 cut(s) 259
Hin1II CATG 2 cut(s) 230, 378
Hin6I GCGC 1 cut(s) 257
HinP1I GCGC 1 cut(s) 257
HinfI GANTC 1 cut(s) 393
HpaII CCGG 2 cut(s) 70, 93
Hpy99I CGWCG 2 cut(s) 185, 361
HpyCH4III ACNGT 2 cut(s) 117, 137
HpyCH4V TGCA 1 cut(s) 103
HpyF10VI GCNNNNNNNGC 4 cut(s) 88, 263, 272, 281
HpyF3I CTNAG 1 cut(s) 122
Hsp92II CATG 2 cut(s) 230, 378
HspAI GCGC 1 cut(s) 257
KspI CCGCGG 1 cut(s) 222
Kzo9I GATC 5 cut(s) 184, 213, 285, 400, 416
LmnI GCTCC 2 cut(s) 64, 223
LpnPI CCDG 9 cut(s) 59, 71, 83, 101, 106, 261, 266, 299, 389
Lsp1109I GCAGC 1 cut(s) 284
MaeIII GTNAC 1 cut(s) 137
MalI GATC 5 cut(s) 186, 215, 287, 402, 418
MboI GATC 5 cut(s) 184, 213, 285, 400, 416
MboII GAAGA 3 cut(s) 188, 208, 280
MflI RGATCY 1 cut(s) 400
MhlI GDGCHC 1 cut(s) 69
MluCI AATT 4 cut(s) 49, 171, 208, 295
MmeI TCCRAC 1 cut(s) 42
MnlI CCTC 4 cut(s) 119, 251, 317, 378
MroXI GAANNNNTTC 1 cut(s) 392
MseI TTAA 2 cut(s) 237, 413
MslI CAYNNNNRTG 1 cut(s) 379
MspA1I CMGCKG 3 cut(s) 221, 266, 275
MspI CCGG 2 cut(s) 70, 93
MspR9I CCNGG 2 cut(s) 70, 93
MvnI CGCG 1 cut(s) 221
MwoI GCNNNNNNNGC 4 cut(s) 88, 263, 272, 281
NciI CCSGG 2 cut(s) 70, 93
NcoI CCATGG 1 cut(s) 374
NdeII GATC 5 cut(s) 184, 213, 285, 400, 416
NlaIII CATG 2 cut(s) 230, 378
NlaIV GGNNCC 3 cut(s) 66, 351, 372
NmuCI GTSAC 1 cut(s) 137
PdmI GAANNNNTTC 1 cut(s) 392
PfeI GAWTC 1 cut(s) 393
PkrI GCNGC 3 cut(s) 220, 274, 332
Ple19I CGATCG 1 cut(s) 216
PspN4I GGNNCC 3 cut(s) 66, 351, 372
PspPI GGNCC 3 cut(s) 20, 350, 371
PsuI RGATCY 1 cut(s) 400
PvuI CGATCG 1 cut(s) 216
PvuII CAGCTG 1 cut(s) 266
RseI CAYNNNNRTG 1 cut(s) 379
SacII CCGCGG 1 cut(s) 222
SaqAI TTAA 2 cut(s) 237, 413
SatI GCNGC 3 cut(s) 219, 273, 331
Sau3AI GATC 5 cut(s) 184, 213, 285, 400, 416
Sau96I GGNCC 3 cut(s) 20, 350, 371
ScrFI CCNGG 2 cut(s) 70, 93
SduI GDGCHC 1 cut(s) 69
SetI ASST 5 cut(s) 48, 111, 243, 268, 306
SfcI CTRYAG 1 cut(s) 77
Sfr303I CCGCGG 1 cut(s) 222
SgrBI CCGCGG 1 cut(s) 222
SinI GGWCC 2 cut(s) 20, 350
SmiMI CAYNNNNRTG 1 cut(s) 379
Sse9I AATT 4 cut(s) 49, 171, 208, 295
SsiI CCGC 6 cut(s) 23, 85, 219, 221, 275, 331
StyD4I CCNGG 2 cut(s) 68, 91
StyI CCWWGG 1 cut(s) 374
TaaI ACNGT 2 cut(s) 117, 137
TaqI TCGA 3 cut(s) 28, 212, 243
TasI AATT 4 cut(s) 49, 171, 208, 295
TauI GCSGC 2 cut(s) 221, 333
TfiI GAWTC 1 cut(s) 393
Tru1I TTAA 2 cut(s) 237, 413
Tru9I TTAA 2 cut(s) 237, 413
TseFI GTSAC 1 cut(s) 137
TseI GCWGC 1 cut(s) 272
Tsp45I GTSAC 1 cut(s) 137
TspDTI ATGAA 1 cut(s) 280
VpaK11BI GGWCC 2 cut(s) 20, 350
XapI RAATTY 1 cut(s) 49
XmnI GAANNNNTTC 1 cut(s) 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.