Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002407

Physical Location & Seq

Genomic Coordinates Reverse (-)

17712544 .. 17714338

Gene Structure 1795 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028014

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGGCTTGGATTATGCTAAGGGAATCAATGGAATTAGGAGTATAGATGGATATGGGATTGAGCAAAATGAAGCTGAAAAGGTGATACCCTACATAGCAAGTGAGTACCAGAAAGATAAAATAAGGCTAAGACGGACCCGGCCTAACAAACGTGATTATCAAGTTGTTATTGCTGTTGATGATTCCCACAGTATGTCTGAGAGTTGCTGTGGGGATGTTGCTATTGAAGCTCTGGTGATAGTGTGTTGTGCAATGTCACAACTGTTTGTGATCATTGGAGTGATGTTTGATATTGTGCTGCAGGTGCTTGTTCGAGCTGGAAAGTCTAGTCTAGTGTTGTACTTTATTCAAGGTTCATTGAATTTCAGTGTTGCCTTCTTCTTGCAAACATTGGTTGTAAATGACGCAACTGTAAAATTTGAGATTTGGGATACAGCAGGTCAAGAGAGGTACCATAGTTTGGCGCCAATGTATTATAGAGGAGCTGCTGCTGCAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003824 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009553 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0022613 GO:0022618 GO:0030054 GO:0030684 GO:0030687 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0040008 GO:0042254 GO:0042255 GO:0042273 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0048229 GO:0048638 GO:0048856 GO:0050789 GO:0050793 GO:0055044 GO:0065003 GO:0065007 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AAA_5

Protein Analysis

167

Amino Acids

18.49

Weight (kDa)

5.67

Isoelectric Point (pI)

40.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Roc	PF08477	105 - 166	3.8e-11	Ras of Complex, Roc, domain of DAPkinase
Ras	PF00071	106 - 166	1.8e-13	Ras family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002407)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0357141
rosa_laevigata	RLG00000002011 RLG00000003375 RLG00000004903 RLG00000007386 RLG00000009065 RLG00000009288 RLG00000013868 RLG00000014254 RLG00000014965 RLG00000015454 RLG00000028014 RLG00000029416 RLG00000032950 RLG00000036480 RLG00000037033
rosa_multiflora	Rmu_sc0000227.1_g000012 Rmu_ssc0000361.1_g000010 Rmu_ssc0000420.1_g000021
rosa_roxburghii	Rroxscaffold_1G00008600 Rroxscaffold_1G00017770 Rroxscaffold_2G00103190 Rroxscaffold_7G00160850
rosa_rugosa	Rorug01G0134400.1 Rorug02G0253700 Rorug06G0012400
rosa_samantha	Rh1CG204200 Rh2AG323900 Rh2AG477000 Rh2BG488800 Rh2CG462700 Rh2DG497800 Rh3AG144500 Rh3BG166900 Rh4BG074700 Rh4BG080300 Rh5CG311500 Rh6BG200700 Rh6CG201900 Rh7AG241500 Rh7CG256100
rosa_wichuraiana	Rw6G017170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	292
Acc36I	ACCTGC	2 cut(s)	292, 428
Acc65I	GGTACC	1 cut(s)	450
AccB1I	GGYRCC	2 cut(s)	450, 463
AccB7I	CCANNNNNTGG	1 cut(s)	460
AcsI	RAATTY	2 cut(s)	361, 416
AcyI	GRCGYC	1 cut(s)	464
AfaI	GTAC	3 cut(s)	107, 341, 452
AfiI	CCNNNNNNNGG	1 cut(s)	460
AgsI	TTSAA	3 cut(s)	227, 350, 361
AluBI	AGCT	4 cut(s)	74, 230, 317, 485
AluI	AGCT	4 cut(s)	74, 230, 317, 485
AoxI	GGCC	1 cut(s)	140
ApeKI	GCWGC	4 cut(s)	298, 485, 488, 491
ApoI	RAATTY	2 cut(s)	361, 416
Asp718I	GGTACC	1 cut(s)	450
AspLEI	GCGC	1 cut(s)	466
AspS9I	GGNCC	1 cut(s)	135
AsuC2I	CCSGG	1 cut(s)	139
AsuHPI	GGTGA	2 cut(s)	94, 247
AvaII	GGWCC	1 cut(s)	135
BaeI	ACNNNNGTAYC	2 cut(s)	442, 475
BanI	GGYRCC	2 cut(s)	450, 463
BbvI	GCAGC	4 cut(s)	285, 472, 475, 478
BccI	CCATC	1 cut(s)	41
BciVI	GTATCC	1 cut(s)	424
BclI	TGATCA	1 cut(s)	270
BcnI	CCSGG	1 cut(s)	139
BfaI	CTAG	2 cut(s)	327, 332
BfmI	CTRYAG	1 cut(s)	299
BfoI	RGCGCY	1 cut(s)	467
BfuAI	ACCTGC	2 cut(s)	292, 428
BfuI	GTATCC	1 cut(s)	424
BisI	GCNGC	4 cut(s)	299, 486, 489, 492
BlsI	GCNGC	4 cut(s)	300, 487, 490, 493
Bme1390I	CCNGG	1 cut(s)	139
Bme18I	GGWCC	1 cut(s)	135
BmgT120I	GGNCC	1 cut(s)	135
BmiI	GGNNCC	3 cut(s)	137, 452, 465
BmrFI	CCNGG	1 cut(s)	139
Bpu10I	CCTNAGC	1 cut(s)	18
BpuMI	CCSGG	1 cut(s)	139
BsaHI	GRCGYC	1 cut(s)	464
Bsc4I	CCNNNNNNNGG	1 cut(s)	460
Bse3DI	GCAATG	1 cut(s)	258
BseGI	GGATG	1 cut(s)	220
BseLI	CCNNNNNNNGG	1 cut(s)	460
BseMI	GCAATG	1 cut(s)	258
BseMII	CTCAG	1 cut(s)	189
BseRI	GAGGAG	1 cut(s)	495
BseXI	GCAGC	4 cut(s)	285, 472, 475, 478
BshFI	GGCC	1 cut(s)	142
BshNI	GGYRCC	2 cut(s)	450, 463
BsiSI	CCGG	1 cut(s)	139
BslI	CCNNNNNNNGG	1 cut(s)	460
BsnI	GGCC	1 cut(s)	142
Bsp143I	GATC	1 cut(s)	270
BspANI	GGCC	1 cut(s)	142
BspCNI	CTCAG	1 cut(s)	190
BspLI	GGNNCC	3 cut(s)	137, 452, 465
BspMAI	CTGCAG	1 cut(s)	303
BspMI	ACCTGC	2 cut(s)	292, 428
BspT107I	GGYRCC	2 cut(s)	450, 463
BsrDI	GCAATG	1 cut(s)	258
BssMI	GATC	1 cut(s)	270
BssNI	GRCGYC	1 cut(s)	464
Bst4CI	ACNGT	3 cut(s)	191, 264, 412
BstACI	GRCGYC	1 cut(s)	464
BstDEI	CTNAG	3 cut(s)	18, 128, 198
BstF5I	GGATG	1 cut(s)	220
BstH2I	RGCGCY	1 cut(s)	467
BstHHI	GCGC	1 cut(s)	466
BstKTI	GATC	1 cut(s)	273
BstMBI	GATC	1 cut(s)	270
BstMWI	GCNNNNNNNGC	3 cut(s)	227, 304, 491
BstSCI	CCNGG	1 cut(s)	137
BstSFI	CTRYAG	1 cut(s)	299
BstV1I	GCAGC	4 cut(s)	285, 472, 475, 478
BsuI	GTATCC	1 cut(s)	424
BsuRI	GGCC	1 cut(s)	142
BtsCI	GGATG	1 cut(s)	220
BtsIMutI	CAGTG	1 cut(s)	373
BveI	ACCTGC	2 cut(s)	292, 428
CfoI	GCGC	1 cut(s)	466
Cfr13I	GGNCC	1 cut(s)	135
CseI	GACGC	1 cut(s)	413
Csp6I	GTAC	3 cut(s)	106, 340, 451
CviJI	RGCY	7 cut(s)	6, 74, 127, 142, 230, 317, 485
CviKI_1	RGCY	7 cut(s)	6, 74, 127, 142, 230, 317, 485
CviQI	GTAC	3 cut(s)	106, 340, 451
DdeI	CTNAG	3 cut(s)	18, 128, 198
DinI	GGCGCC	1 cut(s)	465
DpnI	GATC	1 cut(s)	272
DpnII	GATC	1 cut(s)	270
Eco47I	GGWCC	1 cut(s)	135
EgeI	GGCGCC	1 cut(s)	465
EheI	GGCGCC	1 cut(s)	465
FaiI	YATR	8 cut(s)	15, 44, 54, 95, 194, 456, 477, 499
FbaI	TGATCA	1 cut(s)	270
Fnu4HI	GCNGC	4 cut(s)	299, 486, 489, 492
FokI	GGATG	1 cut(s)	227
Fsp4HI	GCNGC	4 cut(s)	299, 486, 489, 492
FspBI	CTAG	2 cut(s)	327, 332
GlaI	GCGC	1 cut(s)	465
GluI	GCNGC	4 cut(s)	299, 486, 489, 492
HaeII	RGCGCY	1 cut(s)	467
HaeIII	GGCC	1 cut(s)	142
HapII	CCGG	1 cut(s)	139
HgaI	GACGC	1 cut(s)	413
HhaI	GCGC	1 cut(s)	466
Hin1I	GRCGYC	1 cut(s)	464
Hin6I	GCGC	1 cut(s)	464
HinP1I	GCGC	1 cut(s)	464
HinfI	GANTC	2 cut(s)	24, 182
HpaII	CCGG	1 cut(s)	139
HphI	GGTGA	2 cut(s)	94, 247
Hpy188I	TCNGA	1 cut(s)	199
Hpy188III	TCNNGA	1 cut(s)	443
HpyAV	CCTTC	1 cut(s)	385
HpyCH4III	ACNGT	3 cut(s)	191, 264, 412
HpyCH4IV	ACGT	1 cut(s)	151
HpyCH4V	TGCA	4 cut(s)	251, 301, 385, 494
HpyF10VI	GCNNNNNNNGC	3 cut(s)	227, 304, 491
HpyF3I	CTNAG	3 cut(s)	18, 128, 198
HpySE526I	ACGT	1 cut(s)	151
Hsp92I	GRCGYC	1 cut(s)	464
HspAI	GCGC	1 cut(s)	464
KasI	GGCGCC	1 cut(s)	463
KpnI	GGTACC	1 cut(s)	454
Ksp22I	TGATCA	1 cut(s)	270
Kzo9I	GATC	1 cut(s)	270
LmnI	GCTCC	1 cut(s)	482
LpnPI	CCDG	6 cut(s)	122, 152, 218, 287, 303, 423
Lsp1109I	GCAGC	4 cut(s)	285, 472, 475, 478
MaeI	CTAG	2 cut(s)	327, 332
MaeII	ACGT	1 cut(s)	151
MaeIII	GTNAC	1 cut(s)	255
MalI	GATC	1 cut(s)	272
MboI	GATC	1 cut(s)	270
MboII	GAAGA	1 cut(s)	370
MluCI	AATT	3 cut(s)	33, 361, 416
Mly113I	GGCGCC	1 cut(s)	464
MnlI	CCTC	2 cut(s)	441, 473
MslI	CAYNNNNRTG	1 cut(s)	278
MspI	CCGG	1 cut(s)	139
MspR9I	CCNGG	1 cut(s)	139
MwoI	GCNNNNNNNGC	3 cut(s)	227, 304, 491
NarI	GGCGCC	1 cut(s)	464
NciI	CCSGG	1 cut(s)	139
NdeII	GATC	1 cut(s)	270
NlaIV	GGNNCC	3 cut(s)	137, 452, 465
NmuCI	GTSAC	1 cut(s)	255
PaqCI	CACCTGC	1 cut(s)	292
PfeI	GAWTC	2 cut(s)	24, 182
PflMI	CCANNNNNTGG	1 cut(s)	460
PkrI	GCNGC	4 cut(s)	300, 487, 490, 493
PluTI	GGCGCC	1 cut(s)	467
PspN4I	GGNNCC	3 cut(s)	137, 452, 465
PspPI	GGNCC	1 cut(s)	135
PstI	CTGCAG	1 cut(s)	303
RsaI	GTAC	3 cut(s)	107, 341, 452
RsaNI	GTAC	3 cut(s)	106, 340, 451
RseI	CAYNNNNRTG	1 cut(s)	278
SatI	GCNGC	4 cut(s)	299, 486, 489, 492
Sau3AI	GATC	1 cut(s)	270
Sau96I	GGNCC	1 cut(s)	135
ScrFI	CCNGG	1 cut(s)	139
SfcI	CTRYAG	1 cut(s)	299
SfoI	GGCGCC	1 cut(s)	465
SinI	GGWCC	1 cut(s)	135
SmiMI	CAYNNNNRTG	1 cut(s)	278
Sse9I	AATT	3 cut(s)	33, 361, 416
SspDI	GGCGCC	1 cut(s)	463
SspMI	CTAG	2 cut(s)	327, 332
StyD4I	CCNGG	1 cut(s)	137
TaaI	ACNGT	3 cut(s)	191, 264, 412
TaiI	ACGT	1 cut(s)	154
TaqI	TCGA	1 cut(s)	313
TasI	AATT	3 cut(s)	33, 361, 416
TatI	WGTACW	1 cut(s)	339
TfiI	GAWTC	2 cut(s)	24, 182
TscAI	CASTG	1 cut(s)	373
TseFI	GTSAC	1 cut(s)	255
TseI	GCWGC	4 cut(s)	298, 485, 488, 491
Tsp45I	GTSAC	1 cut(s)	255
TspDTI	ATGAA	2 cut(s)	84, 345
TspGWI	ACGGA	1 cut(s)	148
TspRI	CASTG	1 cut(s)	373
Van91I	CCANNNNNTGG	1 cut(s)	460
VpaK11BI	GGWCC	1 cut(s)	135
XapI	RAATTY	2 cut(s)	361, 416
XspI	CTAG	2 cut(s)	327, 332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.