Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002407

Physical Location & Seq

Genomic Coordinates Forward (+)

24826879 .. 24827250

Gene Structure 372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG256100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGCTCGACCCGAATTTGACCCTGGTGGAGCCCCGGACAAGCCAACATCGCCAGCCCGGACTTTTGCTCGACCGCACACAGTCCCTTAGGGTTTTCCAAGGTCACAATAGTATCAAACAGCTTCTAATCGTTGAAATTGAAGACAACGATCTTGTGGAGAAGAACAACTACTATTCGGTCGCGGTGGAGCCTGACCGACTTGACCTCGAACCGGAACGAGCGCTCACTGACGCAGCGGGACTGGCGATCTTCATAGATCATGACCTTGTTGGGCGGGCAGAACAAGGAAGCCTTCATTTGTTTTTGATCAGAGCAATGACCGGGGCTCTGGGGCAATGGTGGTGGAGGAGAAGATTCTTGGATCTTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

123

Amino Acids

14.13

Weight (kDa)

5.26

Isoelectric Point (pI)

41.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002407)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0357141
rosa_laevigata	RLG00000002011 RLG00000003375 RLG00000004903 RLG00000007386 RLG00000009065 RLG00000009288 RLG00000013868 RLG00000014254 RLG00000014965 RLG00000015454 RLG00000028014 RLG00000029416 RLG00000032950 RLG00000036480 RLG00000037033
rosa_multiflora	Rmu_sc0000227.1_g000012 Rmu_ssc0000361.1_g000010 Rmu_ssc0000420.1_g000021
rosa_roxburghii	Rroxscaffold_1G00008600 Rroxscaffold_1G00017770 Rroxscaffold_2G00103190 Rroxscaffold_7G00160850
rosa_rugosa	Rorug01G0134400.1 Rorug02G0253700 Rorug06G0012400
rosa_samantha	Rh1CG204200 Rh2AG323900 Rh2AG477000 Rh2BG488800 Rh2CG462700 Rh2DG497800 Rh3AG144500 Rh3BG166900 Rh4BG074700 Rh4BG080300 Rh5CG311500 Rh6BG200700 Rh6CG201900 Rh7AG241500 Rh7CG256100
rosa_wichuraiana	Rw6G017170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	182
AciI	CCGC	4 cut(s)	73, 182, 236, 274
AclWI	GGATC	1 cut(s)	369
AcsI	RAATTY	1 cut(s)	13
AfeI	AGCGCT	1 cut(s)	222
AfiI	CCNNNNNNNGG	1 cut(s)	211
AgsI	TTSAA	2 cut(s)	134, 140
AjnI	CCWGG	1 cut(s)	21
AluBI	AGCT	1 cut(s)	121
AluI	AGCT	1 cut(s)	121
AlwI	GGATC	1 cut(s)	369
Aor51HI	AGCGCT	1 cut(s)	222
ApeKI	GCWGC	1 cut(s)	233
ApoI	RAATTY	1 cut(s)	13
AspLEI	GCGC	1 cut(s)	223
AsuC2I	CCSGG	3 cut(s)	34, 57, 322
AxyI	CCTNAGG	1 cut(s)	86
BaeI	ACNNNNGTAYC	2 cut(s)	94, 127
BanII	GRGCYC	2 cut(s)	33, 328
BarI	GAAGNNNNNNTAC	2 cut(s)	152, 184
BbsI	GAAGAC	1 cut(s)	147
BbvI	GCAGC	1 cut(s)	245
BciT130I	CCWGG	1 cut(s)	23
BclI	TGATCA	1 cut(s)	306
BcnI	CCSGG	3 cut(s)	34, 57, 322
BfoI	RGCGCY	1 cut(s)	224
BisI	GCNGC	1 cut(s)	234
BlsI	GCNGC	1 cut(s)	235
Bme1390I	CCNGG	4 cut(s)	23, 34, 57, 322
BmiI	GGNNCC	2 cut(s)	30, 189
BmrFI	CCNGG	4 cut(s)	23, 34, 57, 322
BpiI	GAAGAC	1 cut(s)	147
BpuMI	CCSGG	3 cut(s)	34, 57, 322
BsaJI	CCNNGG	4 cut(s)	21, 32, 97, 321
BsaWI	WCCGGW	1 cut(s)	211
Bsc4I	CCNNNNNNNGG	1 cut(s)	211
Bse1I	ACTGG	1 cut(s)	246
Bse21I	CCTNAGG	1 cut(s)	86
Bse3DI	GCAATG	2 cut(s)	321, 341
BseBI	CCWGG	1 cut(s)	23
BseDI	CCNNGG	4 cut(s)	21, 32, 97, 321
BseLI	CCNNNNNNNGG	1 cut(s)	211
BseMI	GCAATG	2 cut(s)	321, 341
BseNI	ACTGG	1 cut(s)	246
BseRI	GAGGAG	1 cut(s)	361
BseXI	GCAGC	1 cut(s)	245
Bsh1236I	CGCG	1 cut(s)	182
Bsh1285I	CGRYCG	2 cut(s)	73, 180
BsiEI	CGRYCG	2 cut(s)	73, 180
BsiSI	CCGG	4 cut(s)	34, 57, 212, 321
BslFI	GGGAC	2 cut(s)	67, 252
BslI	CCNNNNNNNGG	1 cut(s)	211
BsmFI	GGGAC	2 cut(s)	67, 252
Bsp1286I	GDGCHC	2 cut(s)	33, 328
Bsp143I	GATC	5 cut(s)	148, 246, 256, 306, 361
BspACI	CCGC	4 cut(s)	73, 182, 236, 274
BspFNI	CGCG	1 cut(s)	182
BspHI	TCATGA	1 cut(s)	259
BspLI	GGNNCC	2 cut(s)	30, 189
BspPI	GGATC	1 cut(s)	369
BsrDI	GCAATG	2 cut(s)	321, 341
BsrI	ACTGG	1 cut(s)	246
BssECI	CCNNGG	4 cut(s)	21, 32, 97, 321
BssMI	GATC	5 cut(s)	148, 246, 256, 306, 361
BssT1I	CCWWGG	1 cut(s)	97
Bst2UI	CCWGG	1 cut(s)	23
Bst4CI	ACNGT	1 cut(s)	81
BstC8I	GCNNGC	2 cut(s)	53, 276
BstDEI	CTNAG	1 cut(s)	86
BstFNI	CGCG	1 cut(s)	182
BstH2I	RGCGCY	1 cut(s)	224
BstHHI	GCGC	1 cut(s)	223
BstKTI	GATC	5 cut(s)	151, 249, 259, 309, 364
BstMBI	GATC	5 cut(s)	148, 246, 256, 306, 361
BstMCI	CGRYCG	2 cut(s)	73, 180
BstMWI	GCNNNNNNNGC	2 cut(s)	48, 242
BstNI	CCWGG	1 cut(s)	23
BstSCI	CCNGG	4 cut(s)	21, 32, 55, 320
BstUI	CGCG	1 cut(s)	182
BstV1I	GCAGC	1 cut(s)	245
BstV2I	GAAGAC	1 cut(s)	147
BstX2I	RGATCY	1 cut(s)	361
BstYI	RGATCY	1 cut(s)	361
Bsu36I	CCTNAGG	1 cut(s)	86
BtgZI	GCGATG	1 cut(s)	32
BtsIMutI	CAGTG	1 cut(s)	225
Cac8I	GCNNGC	2 cut(s)	53, 276
CciI	TCATGA	1 cut(s)	259
CfoI	GCGC	1 cut(s)	223
CseI	GACGC	1 cut(s)	239
CspCI	CAANNNNNGTGG	2 cut(s)	323, 358
CviAII	CATG	1 cut(s)	260
CviJI	RGCY	7 cut(s)	31, 42, 55, 121, 190, 291, 326
CviKI_1	RGCY	7 cut(s)	31, 42, 55, 121, 190, 291, 326
DdeI	CTNAG	1 cut(s)	86
DpnI	GATC	5 cut(s)	150, 248, 258, 308, 363
DpnII	GATC	5 cut(s)	148, 246, 256, 306, 361
Eco130I	CCWWGG	1 cut(s)	97
Eco24I	GRGCYC	2 cut(s)	33, 328
Eco47III	AGCGCT	1 cut(s)	222
Eco81I	CCTNAGG	1 cut(s)	86
EcoRII	CCWGG	1 cut(s)	21
EcoT14I	CCWWGG	1 cut(s)	97
EcoT38I	GRGCYC	2 cut(s)	33, 328
ErhI	CCWWGG	1 cut(s)	97
FaeI	CATG	1 cut(s)	263
FaiI	YATR	2 cut(s)	254, 261
FalI	AAGNNNNNCTT	2 cut(s)	276, 308
FaqI	GGGAC	2 cut(s)	67, 252
FatI	CATG	1 cut(s)	259
FauI	CCCGC	2 cut(s)	229, 267
FbaI	TGATCA	1 cut(s)	306
Fnu4HI	GCNGC	1 cut(s)	234
FriOI	GRGCYC	2 cut(s)	33, 328
Fsp4HI	GCNGC	1 cut(s)	234
GlaI	GCGC	1 cut(s)	222
GluI	GCNGC	1 cut(s)	234
HaeII	RGCGCY	1 cut(s)	224
HapII	CCGG	4 cut(s)	34, 57, 212, 321
HgaI	GACGC	1 cut(s)	239
HhaI	GCGC	1 cut(s)	223
Hin1II	CATG	1 cut(s)	263
Hin6I	GCGC	1 cut(s)	221
HinP1I	GCGC	1 cut(s)	221
HinfI	GANTC	1 cut(s)	354
HpaII	CCGG	4 cut(s)	34, 57, 212, 321
Hpy188I	TCNGA	1 cut(s)	311
Hpy188III	TCNNGA	1 cut(s)	260
HpyAV	CCTTC	1 cut(s)	302
HpyCH4III	ACNGT	1 cut(s)	81
HpyF10VI	GCNNNNNNNGC	2 cut(s)	48, 242
HpyF3I	CTNAG	1 cut(s)	86
Hsp92II	CATG	1 cut(s)	263
HspAI	GCGC	1 cut(s)	221
Ksp22I	TGATCA	1 cut(s)	306
Kzo9I	GATC	5 cut(s)	148, 246, 256, 306, 361
LmnI	GCTCC	2 cut(s)	28, 187
Lsp1109I	GCAGC	1 cut(s)	245
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	5 cut(s)	150, 248, 258, 308, 363
MboI	GATC	5 cut(s)	148, 246, 256, 306, 361
MboII	GAAGA	4 cut(s)	152, 172, 241, 363
MflI	RGATCY	1 cut(s)	361
MhlI	GDGCHC	2 cut(s)	33, 328
MluCI	AATT	2 cut(s)	13, 135
MnlI	CCTC	2 cut(s)	215, 339
MspA1I	CMGCKG	1 cut(s)	236
MspI	CCGG	4 cut(s)	34, 57, 212, 321
MspR9I	CCNGG	4 cut(s)	23, 34, 57, 322
MvaI	CCWGG	1 cut(s)	23
MvnI	CGCG	1 cut(s)	182
MwoI	GCNNNNNNNGC	2 cut(s)	48, 242
NciI	CCSGG	3 cut(s)	34, 57, 322
NdeII	GATC	5 cut(s)	148, 246, 256, 306, 361
NlaIII	CATG	1 cut(s)	263
NlaIV	GGNNCC	2 cut(s)	30, 189
NmuCI	GTSAC	1 cut(s)	101
PagI	TCATGA	1 cut(s)	259
PfeI	GAWTC	1 cut(s)	354
PkrI	GCNGC	1 cut(s)	235
Psp6I	CCWGG	1 cut(s)	21
PspGI	CCWGG	1 cut(s)	21
PspN4I	GGNNCC	2 cut(s)	30, 189
PsuI	RGATCY	1 cut(s)	361
SatI	GCNGC	1 cut(s)	234
Sau3AI	GATC	5 cut(s)	148, 246, 256, 306, 361
ScrFI	CCNGG	4 cut(s)	23, 34, 57, 322
SduI	GDGCHC	2 cut(s)	33, 328
SetI	ASST	4 cut(s)	103, 123, 207, 267
Sse9I	AATT	2 cut(s)	13, 135
SsiI	CCGC	4 cut(s)	73, 182, 236, 274
StyD4I	CCNGG	4 cut(s)	21, 32, 55, 320
StyI	CCWWGG	1 cut(s)	97
TaaI	ACNGT	1 cut(s)	81
TaqI	TCGA	3 cut(s)	6, 69, 207
TaqII	GACCGA	2 cut(s)	166, 210
TasI	AATT	2 cut(s)	13, 135
TfiI	GAWTC	1 cut(s)	354
TscAI	CASTG	1 cut(s)	232
TseFI	GTSAC	1 cut(s)	101
TseI	GCWGC	1 cut(s)	233
Tsp45I	GTSAC	1 cut(s)	101
TspDTI	ATGAA	2 cut(s)	241, 284
TspRI	CASTG	1 cut(s)	232
XapI	RAATTY	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.