Rh3AG144500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0002407
Physical Location & Seq
Forward (+)
12789876 .. 12790262
387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG144500.1

Sequence Viewer

Length: 387 bp
ATGGAGTTGATGAGGTTGAGTCCAGGAGCTTCTAACTCCAAGAGAGACTGCGAGTTTAGAGCTGGTAAGTTTCATGGAATAGGGAACAACTACGATTCGGTCGCGGCGGAGCCTGACCGACTTGACCTCGGACCGGAACTGAGGCTATGGGAGGCCAAACAAGGAAGCCGCCATTTGTTTTTGATCAGAGCAATGACGGGGGCTCTAGGGCTATGGTGGTGGAGGAGAGGATTCTTGGGTCTGGGTGGATTAAGATTGGGTCAGATTGATCGACCCCGATCAGACACATATACTGGATTCTTTATTGGCGGCGATGACAAGCACGAAGTGTGCTCGTTAGATGCAGATGACTTGGGTGGCTGGCTTAGCCATGGCAGATTGGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.27

Weight (kDa)

6.9

Isoelectric Point (pI)

34.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 104
AciI CCGC 4 cut(s) 104, 107, 169, 309
AdeI CACNNNGTG 1 cut(s) 328
AfiI CCNNNNNNNGG 1 cut(s) 133
AjnI CCWGG 1 cut(s) 22
AluBI AGCT 2 cut(s) 29, 62
AluI AGCT 2 cut(s) 29, 62
Alw21I GWGCWC 1 cut(s) 335
Alw26I GTCTC 1 cut(s) 39
AoxI GGCC 1 cut(s) 153
AspS9I GGNCC 1 cut(s) 131
AvaII GGWCC 1 cut(s) 131
BanII GRGCYC 1 cut(s) 205
Bbv12I GWGCWC 1 cut(s) 335
BciT130I CCWGG 1 cut(s) 24
BclI TGATCA 1 cut(s) 183
BcoDI GTCTC 1 cut(s) 39
BfaI CTAG 1 cut(s) 206
BisI GCNGC 3 cut(s) 105, 169, 310
BlpI GCTNAGC 1 cut(s) 365
BlsI GCNGC 3 cut(s) 106, 170, 311
Bme1390I CCNGG 1 cut(s) 24
Bme18I GGWCC 1 cut(s) 131
BmgT120I GGNCC 1 cut(s) 131
BmiI GGNNCC 1 cut(s) 111
BmrFI CCNGG 1 cut(s) 24
BmsI GCATC 1 cut(s) 331
Bpu1102I GCTNAGC 1 cut(s) 365
BsaJI CCNNGG 2 cut(s) 127, 370
BsaWI WCCGGW 1 cut(s) 133
Bsc4I CCNNNNNNNGG 1 cut(s) 133
Bse1I ACTGG 1 cut(s) 298
Bse3DI GCAATG 1 cut(s) 198
BseBI CCWGG 1 cut(s) 24
BseDI CCNNGG 2 cut(s) 127, 370
BseLI CCNNNNNNNGG 1 cut(s) 133
BseMI GCAATG 1 cut(s) 198
BseMII CTCAG 1 cut(s) 131
BseNI ACTGG 1 cut(s) 298
BseRI GAGGAG 1 cut(s) 238
Bsh1236I CGCG 1 cut(s) 104
Bsh1285I CGRYCG 1 cut(s) 102
BshFI GGCC 1 cut(s) 155
BsiEI CGRYCG 1 cut(s) 102
BsiHKAI GWGCWC 1 cut(s) 335
BsiSI CCGG 1 cut(s) 134
BslI CCNNNNNNNGG 1 cut(s) 133
BsmAI GTCTC 1 cut(s) 39
BsnI GGCC 1 cut(s) 155
Bsp1286I GDGCHC 2 cut(s) 205, 335
Bsp143I GATC 3 cut(s) 183, 268, 278
Bsp1720I GCTNAGC 1 cut(s) 365
Bsp19I CCATGG 1 cut(s) 370
BspACI CCGC 4 cut(s) 104, 107, 169, 309
BspANI GGCC 1 cut(s) 155
BspCNI CTCAG 1 cut(s) 132
BspFNI CGCG 1 cut(s) 104
BspLI GGNNCC 1 cut(s) 111
BsrDI GCAATG 1 cut(s) 198
BsrI ACTGG 1 cut(s) 298
BssECI CCNNGG 2 cut(s) 127, 370
BssMI GATC 3 cut(s) 183, 268, 278
BssT1I CCWWGG 1 cut(s) 370
Bst2UI CCWGG 1 cut(s) 24
BstC8I GCNNGC 1 cut(s) 362
BstDEI CTNAG 2 cut(s) 140, 365
BstDSI CCRYGG 1 cut(s) 370
BstFNI CGCG 1 cut(s) 104
BstKTI GATC 3 cut(s) 186, 271, 281
BstMAI GTCTC 1 cut(s) 39
BstMBI GATC 3 cut(s) 183, 268, 278
BstMCI CGRYCG 1 cut(s) 102
BstMWI GCNNNNNNNGC 1 cut(s) 366
BstNI CCWGG 1 cut(s) 24
BstSCI CCNGG 1 cut(s) 22
BstUI CGCG 1 cut(s) 104
BsuRI GGCC 1 cut(s) 155
BtgI CCRYGG 1 cut(s) 370
BtgZI GCGATG 1 cut(s) 327
Cac8I GCNNGC 1 cut(s) 362
Cfr13I GGNCC 1 cut(s) 131
CpoI CGGWCCG 1 cut(s) 131
CspI CGGWCCG 1 cut(s) 131
CviAII CATG 2 cut(s) 74, 371
DdeI CTNAG 2 cut(s) 140, 365
DpnI GATC 3 cut(s) 185, 270, 280
DpnII GATC 3 cut(s) 183, 268, 278
DraIII CACNNNGTG 1 cut(s) 328
EciI GGCGGA 1 cut(s) 122
Eco130I CCWWGG 1 cut(s) 370
Eco24I GRGCYC 1 cut(s) 205
Eco47I GGWCC 1 cut(s) 131
EcoRII CCWGG 1 cut(s) 22
EcoT14I CCWWGG 1 cut(s) 370
EcoT38I GRGCYC 1 cut(s) 205
ErhI CCWWGG 1 cut(s) 370
FaeI CATG 2 cut(s) 77, 374
FaiI YATR 6 cut(s) 75, 148, 214, 289, 291, 372
FatI CATG 2 cut(s) 73, 370
FbaI TGATCA 1 cut(s) 183
Fnu4HI GCNGC 3 cut(s) 105, 169, 310
FriOI GRGCYC 1 cut(s) 205
Fsp4HI GCNGC 3 cut(s) 105, 169, 310
FspBI CTAG 1 cut(s) 206
GluI GCNGC 3 cut(s) 105, 169, 310
HaeIII GGCC 1 cut(s) 155
HapII CCGG 1 cut(s) 134
Hin1II CATG 2 cut(s) 77, 374
HinfI GANTC 4 cut(s) 19, 95, 231, 297
HpaII CCGG 1 cut(s) 134
Hpy188I TCNGA 4 cut(s) 131, 188, 264, 283
HpyCH4V TGCA 1 cut(s) 344
HpyF10VI GCNNNNNNNGC 1 cut(s) 366
HpyF3I CTNAG 2 cut(s) 140, 365
Hsp92II CATG 2 cut(s) 77, 374
Ksp22I TGATCA 1 cut(s) 183
Kzo9I GATC 3 cut(s) 183, 268, 278
LmnI GCTCC 2 cut(s) 26, 109
LpnPI CCDG 8 cut(s) 9, 36, 48, 126, 147, 227, 279, 346
LweI GCATC 1 cut(s) 331
MaeI CTAG 1 cut(s) 206
MalI GATC 3 cut(s) 185, 270, 280
MboI GATC 3 cut(s) 183, 268, 278
MhlI GDGCHC 2 cut(s) 205, 335
MlyI GAGTC 1 cut(s) 28
MnlI CCTC 6 cut(s) 6, 135, 137, 145, 216, 221
MseI TTAA 1 cut(s) 251
MspI CCGG 1 cut(s) 134
MspR9I CCNGG 1 cut(s) 24
MvaI CCWGG 1 cut(s) 24
MvnI CGCG 1 cut(s) 104
MwoI GCNNNNNNNGC 1 cut(s) 366
NcoI CCATGG 1 cut(s) 370
NdeII GATC 3 cut(s) 183, 268, 278
NlaIII CATG 2 cut(s) 77, 374
NlaIV GGNNCC 1 cut(s) 111
PfeI GAWTC 3 cut(s) 95, 231, 297
PfoI TCCNGGA 1 cut(s) 22
PkrI GCNGC 3 cut(s) 106, 170, 311
PleI GAGTC 1 cut(s) 27
PpsI GAGTC 1 cut(s) 27
Psp6I CCWGG 1 cut(s) 22
PspGI CCWGG 1 cut(s) 22
PspN4I GGNNCC 1 cut(s) 111
PspPI GGNCC 1 cut(s) 131
Rsr2I CGGWCCG 1 cut(s) 131
RsrII CGGWCCG 1 cut(s) 131
SaqAI TTAA 1 cut(s) 251
SatI GCNGC 3 cut(s) 105, 169, 310
Sau3AI GATC 3 cut(s) 183, 268, 278
Sau96I GGNCC 1 cut(s) 131
SchI GAGTC 1 cut(s) 28
ScrFI CCNGG 1 cut(s) 24
SduI GDGCHC 2 cut(s) 205, 335
SetI ASST 4 cut(s) 17, 31, 64, 129
SfaNI GCATC 1 cut(s) 331
SinI GGWCC 1 cut(s) 131
SsiI CCGC 4 cut(s) 104, 107, 169, 309
SspMI CTAG 1 cut(s) 206
StyD4I CCNGG 1 cut(s) 22
StyI CCWWGG 1 cut(s) 370
TaqI TCGA 1 cut(s) 271
TaqII GACCGA 2 cut(s) 88, 132
TauI GCSGC 3 cut(s) 107, 171, 312
TfiI GAWTC 3 cut(s) 95, 231, 297
Tru1I TTAA 1 cut(s) 251
Tru9I TTAA 1 cut(s) 251
TspDTI ATGAA 1 cut(s) 62
VpaK11BI GGWCC 1 cut(s) 131
XspI CTAG 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.