Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002407

Physical Location & Seq

Genomic Coordinates Reverse (-)

87690570 .. 87691389

Gene Structure 820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000037033

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGCCAACACCACCACCTCCTCTTCCTCCTCTCCTCCTTCACCAACGCCAACGCCACCCACCACCTCCACCATATGCAAGAGAAAAGAGCATAACAACCTTCAAAATCTATGGAAGGCGGCGTTATCGGCTGGAGTCGATTTACCAATACGACTGGGATTTCTCAAATCTCGAGAAGGAATTTGAAGAAGAAGGAGGGAAGTTTCATGGAATCGGGAACAACTATGATTCGGTCGCGGCGGAGCCTGACCGACTTGACCTCGGATCGGAACTGGGGCTATGGCAGGCCGAATTTGGAAGCCGCCATTTGTTTTTTATCGGAGCAATGACGGGGGCTCTGGGGCTATGGTGGTGGAGGAGAGGATTCTTGGATCTGGGTGGATTAAGATCGGGTCAAATTGATCGACCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006950 GO:0007088 GO:0007346 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009893 GO:0010286 GO:0010369 GO:0010468 GO:0010564 GO:0010604 GO:0010628 GO:0019222 GO:0031974 GO:0031981 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051726 GO:0051783 GO:0051983 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0080134 GO:0080135 GO:0098687 GO:1900034 GO:1901651

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

137

Amino Acids

15.78

Weight (kDa)

6.92

Isoelectric Point (pI)

59.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002407)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0357141
rosa_laevigata	RLG00000002011 RLG00000003375 RLG00000004903 RLG00000007386 RLG00000009065 RLG00000009288 RLG00000013868 RLG00000014254 RLG00000014965 RLG00000015454 RLG00000028014 RLG00000029416 RLG00000032950 RLG00000036480 RLG00000037033
rosa_multiflora	Rmu_sc0000227.1_g000012 Rmu_ssc0000361.1_g000010 Rmu_ssc0000420.1_g000021
rosa_roxburghii	Rroxscaffold_1G00008600 Rroxscaffold_1G00017770 Rroxscaffold_2G00103190 Rroxscaffold_7G00160850
rosa_rugosa	Rorug01G0134400.1 Rorug02G0253700 Rorug06G0012400
rosa_samantha	Rh1CG204200 Rh2AG323900 Rh2AG477000 Rh2BG488800 Rh2CG462700 Rh2DG497800 Rh3AG144500 Rh3BG166900 Rh4BG074700 Rh4BG080300 Rh5CG311500 Rh6BG200700 Rh6CG201900 Rh7AG241500 Rh7CG256100
rosa_wichuraiana	Rw6G017170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	236
AciI	CCGC	4 cut(s)	118, 236, 239, 301
AclWI	GGATC	2 cut(s)	271, 378
AcsI	RAATTY	2 cut(s)	179, 290
AfiI	CCNNNNNNNGG	1 cut(s)	265
AgsI	TTSAA	2 cut(s)	103, 185
AlwI	GGATC	2 cut(s)	271, 378
Ama87I	CYCGRG	1 cut(s)	170
AoxI	GGCC	1 cut(s)	285
ApoI	RAATTY	2 cut(s)	179, 290
AsuHPI	GGTGA	1 cut(s)	32
AvaI	CYCGRG	1 cut(s)	170
BanII	GRGCYC	1 cut(s)	337
BisI	GCNGC	3 cut(s)	119, 237, 301
BlsI	GCNGC	3 cut(s)	120, 238, 302
BmeT110I	CYCGRG	1 cut(s)	170
BmiI	GGNNCC	1 cut(s)	243
BmrI	ACTGGG	2 cut(s)	163, 281
BmuI	ACTGGG	2 cut(s)	163, 281
BpmI	CTGGAG	1 cut(s)	152
BsaBI	GATNNNNATC	1 cut(s)	385
BsaJI	CCNNGG	1 cut(s)	259
Bsc4I	CCNNNNNNNGG	1 cut(s)	265
Bse1I	ACTGG	2 cut(s)	158, 276
Bse3DI	GCAATG	1 cut(s)	330
Bse8I	GATNNNNATC	1 cut(s)	385
BseDI	CCNNGG	1 cut(s)	259
BseJI	GATNNNNATC	1 cut(s)	385
BseLI	CCNNNNNNNGG	1 cut(s)	265
BseMI	GCAATG	1 cut(s)	330
BseNI	ACTGG	2 cut(s)	158, 276
BseRI	GAGGAG	4 cut(s)	9, 18, 23, 370
Bsh1236I	CGCG	1 cut(s)	236
Bsh1285I	CGRYCG	1 cut(s)	234
BshFI	GGCC	1 cut(s)	287
BsiEI	CGRYCG	1 cut(s)	234
BsiHKCI	CYCGRG	1 cut(s)	170
BslI	CCNNNNNNNGG	1 cut(s)	265
BsnI	GGCC	1 cut(s)	287
BsoBI	CYCGRG	1 cut(s)	170
Bsp1286I	GDGCHC	1 cut(s)	337
Bsp143I	GATC	4 cut(s)	263, 370, 386, 400
BspACI	CCGC	4 cut(s)	118, 236, 239, 301
BspANI	GGCC	1 cut(s)	287
BspFNI	CGCG	1 cut(s)	236
BspLI	GGNNCC	1 cut(s)	243
BspPI	GGATC	2 cut(s)	271, 378
BsrDI	GCAATG	1 cut(s)	330
BsrI	ACTGG	2 cut(s)	158, 276
BssECI	CCNNGG	1 cut(s)	259
BssMI	GATC	4 cut(s)	263, 370, 386, 400
Bst6I	CTCTTC	1 cut(s)	27
BstC8I	GCNNGC	1 cut(s)	285
BstFNI	CGCG	1 cut(s)	236
BstKTI	GATC	4 cut(s)	266, 373, 389, 403
BstMBI	GATC	4 cut(s)	263, 370, 386, 400
BstMCI	CGRYCG	1 cut(s)	234
BstMWI	GCNNNNNNNGC	1 cut(s)	127
BstUI	CGCG	1 cut(s)	236
BstX2I	RGATCY	1 cut(s)	370
BstYI	RGATCY	1 cut(s)	370
BsuRI	GGCC	1 cut(s)	287
Cac8I	GCNNGC	1 cut(s)	285
CviAII	CATG	1 cut(s)	206
CviJI	RGCY	7 cut(s)	130, 244, 277, 287, 300, 335, 343
CviKI_1	RGCY	7 cut(s)	130, 244, 277, 287, 300, 335, 343
DpnI	GATC	4 cut(s)	265, 372, 388, 402
DpnII	GATC	4 cut(s)	263, 370, 386, 400
Eam1104I	CTCTTC	1 cut(s)	27
EarI	CTCTTC	1 cut(s)	27
EciI	GGCGGA	1 cut(s)	254
Eco24I	GRGCYC	1 cut(s)	337
Eco88I	CYCGRG	1 cut(s)	170
EcoT38I	GRGCYC	1 cut(s)	337
FaeI	CATG	1 cut(s)	209
FaiI	YATR	8 cut(s)	73, 75, 92, 111, 207, 225, 280, 346
FatI	CATG	1 cut(s)	205
FauNDI	CATATG	1 cut(s)	73
Fnu4HI	GCNGC	3 cut(s)	119, 237, 301
FriOI	GRGCYC	1 cut(s)	337
Fsp4HI	GCNGC	3 cut(s)	119, 237, 301
GluI	GCNGC	3 cut(s)	119, 237, 301
GsuI	CTGGAG	1 cut(s)	152
HaeIII	GGCC	1 cut(s)	287
Hin1II	CATG	1 cut(s)	209
HinfI	GANTC	4 cut(s)	134, 210, 227, 363
HphI	GGTGA	1 cut(s)	32
Hpy188I	TCNGA	3 cut(s)	263, 268, 320
Hpy188III	TCNNGA	3 cut(s)	170, 172, 214
HpyAV	CCTTC	5 cut(s)	47, 108, 109, 169, 185
HpyCH4V	TGCA	1 cut(s)	77
HpyF10VI	GCNNNNNNNGC	1 cut(s)	127
Hsp92II	CATG	1 cut(s)	209
Kzo9I	GATC	4 cut(s)	263, 370, 386, 400
LmnI	GCTCC	2 cut(s)	241, 320
LpnPI	CCDG	7 cut(s)	116, 139, 257, 258, 269, 323, 359
MalI	GATC	4 cut(s)	265, 372, 388, 402
MboI	GATC	4 cut(s)	263, 370, 386, 400
MboII	GAAGA	3 cut(s)	14, 197, 200
MflI	RGATCY	1 cut(s)	370
MhlI	GDGCHC	1 cut(s)	337
MluCI	AATT	3 cut(s)	179, 290, 396
MlyI	GAGTC	1 cut(s)	143
MseI	TTAA	1 cut(s)	383
MvnI	CGCG	1 cut(s)	236
MwoI	GCNNNNNNNGC	1 cut(s)	127
NdeI	CATATG	1 cut(s)	73
NdeII	GATC	4 cut(s)	263, 370, 386, 400
NlaIII	CATG	1 cut(s)	209
NlaIV	GGNNCC	1 cut(s)	243
PaeR7I	CTCGAG	1 cut(s)	170
PfeI	GAWTC	3 cut(s)	210, 227, 363
PkrI	GCNGC	3 cut(s)	120, 238, 302
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
PspN4I	GGNNCC	1 cut(s)	243
PsuI	RGATCY	1 cut(s)	370
SaqAI	TTAA	1 cut(s)	383
SatI	GCNGC	3 cut(s)	119, 237, 301
Sau3AI	GATC	4 cut(s)	263, 370, 386, 400
SchI	GAGTC	1 cut(s)	143
SduI	GDGCHC	1 cut(s)	337
SetI	ASST	4 cut(s)	19, 67, 101, 261
Sfr274I	CTCGAG	1 cut(s)	170
SlaI	CTCGAG	1 cut(s)	170
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
Sse9I	AATT	3 cut(s)	179, 290, 396
SsiI	CCGC	4 cut(s)	118, 236, 239, 301
TaqI	TCGA	3 cut(s)	137, 171, 403
TaqII	GACCGA	2 cut(s)	220, 264
TasI	AATT	3 cut(s)	179, 290, 396
TauI	GCSGC	3 cut(s)	121, 239, 303
TfiI	GAWTC	3 cut(s)	210, 227, 363
Tru1I	TTAA	1 cut(s)	383
Tru9I	TTAA	1 cut(s)	383
TspDTI	ATGAA	1 cut(s)	194
XapI	RAATTY	2 cut(s)	179, 290
XhoI	CTCGAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.